{"id":"https://openalex.org/W2134089752","doi":"https://doi.org/10.1109/bibmw.2010.5703851","title":"Identification of co-occurring insertions in cancer genomes using association analysis","display_name":"Identification of co-occurring insertions in cancer genomes using association analysis","publication_year":2010,"publication_date":"2010-12-01","ids":{"openalex":"https://openalex.org/W2134089752","doi":"https://doi.org/10.1109/bibmw.2010.5703851","mag":"2134089752"},"language":"en","primary_location":{"id":"doi:10.1109/bibmw.2010.5703851","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2010.5703851","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089436894","display_name":"Michael Steinbach","orcid":"https://orcid.org/0000-0002-7309-6395"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Steinbach","raw_affiliation_strings":["Computer Science and Eng, University of Minnesota, Minneapolis, MN, USA","Computer Science and Eng, University of Minnesota, Minneapolis, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Eng, University of Minnesota, Minneapolis, MN, USA","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"Computer Science and Eng, University of Minnesota, Minneapolis, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101425756","display_name":"Haoyu Yu","orcid":"https://orcid.org/0009-0004-5483-0779"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Haoyu Yu","raw_affiliation_strings":["Minn. Supercomputer Institute, University of Minnesota, Minneapolis, MN, USA","Minn. Supercomputer Inst., University of Minnesota, Minneapolis, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Minn. Supercomputer Institute, University of Minnesota, Minneapolis, MN, USA","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"Minn. Supercomputer Inst., University of Minnesota, Minneapolis, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100645812","display_name":"Vipin Kumar","orcid":"https://orcid.org/0000-0002-9040-2665"},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vipin Kumar","raw_affiliation_strings":["Computer Science and Eng, University of Minnesota, Minneapolis, MN, USA","Computer Science and Eng, University of Minnesota, Minneapolis, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science and Eng, University of Minnesota, Minneapolis, MN, USA","institution_ids":["https://openalex.org/I130238516"]},{"raw_affiliation_string":"Computer Science and Eng, University of Minnesota, Minneapolis, USA","institution_ids":["https://openalex.org/I130238516"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I130238516"],"apc_list":null,"apc_paid":null,"fwci":0.2725,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.54423319,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"32","issue":null,"first_page":"494","last_page":"499"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9829999804496765,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/insertional-mutagenesis","display_name":"Insertional mutagenesis","score":0.7323944568634033},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7246052622795105},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6387355923652649},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6263411045074463},{"id":"https://openalex.org/keywords/kernel","display_name":"Kernel (algebra)","score":0.5616015791893005},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.46527573466300964},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4412737190723419},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4357619881629944},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.42556700110435486},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11987510323524475},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.11340609192848206}],"concepts":[{"id":"https://openalex.org/C107635520","wikidata":"https://www.wikidata.org/wiki/Q1967554","display_name":"Insertional mutagenesis","level":4,"score":0.7323944568634033},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7246052622795105},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6387355923652649},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6263411045074463},{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.5616015791893005},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.46527573466300964},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4412737190723419},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4357619881629944},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.42556700110435486},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11987510323524475},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.11340609192848206},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibmw.2010.5703851","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2010.5703851","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W204885769","https://openalex.org/W1506285740","https://openalex.org/W1531520279","https://openalex.org/W1553696291","https://openalex.org/W1565377632","https://openalex.org/W1565834133","https://openalex.org/W2011103514","https://openalex.org/W2016770717","https://openalex.org/W2027561391","https://openalex.org/W2061779725","https://openalex.org/W2065833903","https://openalex.org/W2079664984","https://openalex.org/W2106389431","https://openalex.org/W2106829835","https://openalex.org/W2110065044","https://openalex.org/W2110893883","https://openalex.org/W2115482638","https://openalex.org/W2130410032","https://openalex.org/W2151953639","https://openalex.org/W2163288162","https://openalex.org/W2165516140","https://openalex.org/W2170283916","https://openalex.org/W2293888039","https://openalex.org/W2482589566","https://openalex.org/W6633402183"],"related_works":["https://openalex.org/W1680186772","https://openalex.org/W18149638","https://openalex.org/W2063852412","https://openalex.org/W2002886694","https://openalex.org/W109703563","https://openalex.org/W2120572391","https://openalex.org/W8423158","https://openalex.org/W2072376324","https://openalex.org/W2113669689","https://openalex.org/W2005388108"],"abstract_inverted_index":{"Collections":[0],"of":[1,24,37,41,49,69,80,111,113,131],"tumor":[2,50],"genomes":[3],"created":[4],"by":[5,33],"insertional":[6],"mutagenesis":[7],"experiments,":[8],"e.g.,":[9],"the":[10,35,47],"Retroviral":[11],"Tagged":[12],"Cancer":[13],"Gene":[14],"Database,":[15],"can":[16,120],"be":[17,121],"analyzed":[18],"to":[19,60,105,123],"find":[20,61,107,124],"connections":[21,30],"between":[22],"mutations":[23],"specific":[25],"genes":[26],"and":[27,82,98],"cancer.":[28],"Such":[29],"are":[31],"found":[32],"identifying":[34],"locations":[36],"insertions":[38,42,65,112],"or":[39,66],"groups":[40],"that":[43,94],"frequently":[44],"occur":[45],"in":[46,129],"collection":[48],"genomes.":[51,132],"Recent":[52],"work":[53],"has":[54],"employed":[55],"a":[56,91],"kernel":[57,96],"density":[58,97],"approach":[59,73,93,119],"such":[62],"commonly":[63,108,126],"occurring":[64,127],"co-occurring":[67,109],"pairs":[68,79],"insertions.":[70],"Unfortunately,":[71],"this":[72,118],"is":[74],"extremely":[75],"compute":[76],"intensive":[77],"for":[78,86],"insertions,":[81],"even":[83],"more":[84],"intractable":[85],"triples,":[87],"etc.":[88],"We":[89],"present":[90],"novel":[92],"combines":[95],"association":[99],"analysis":[100],"(frequent":[101],"pattern":[102],"mining)":[103],"techniques":[104],"efficiently":[106],"sets":[110],"any":[114],"length.":[115],"More":[116],"generally,":[117],"used":[122],"other":[125],"features":[128],"collections":[130]},"counts_by_year":[{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
