{"id":"https://openalex.org/W2125830882","doi":"https://doi.org/10.1109/bibmw.2010.5703794","title":"Temporal clustering of gene expression patterns using short-time segments","display_name":"Temporal clustering of gene expression patterns using short-time segments","publication_year":2010,"publication_date":"2010-12-01","ids":{"openalex":"https://openalex.org/W2125830882","doi":"https://doi.org/10.1109/bibmw.2010.5703794","mag":"2125830882"},"language":"en","primary_location":{"id":"doi:10.1109/bibmw.2010.5703794","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2010.5703794","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5107446421","display_name":"Nguyen Nguyen","orcid":"https://orcid.org/0000-0003-1553-3224"},"institutions":[{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nguyen Nguyen","raw_affiliation_strings":["Department of ECE & Computer Engineering, University of Technology, San Antonio, TX, USA","Dept of ECE & Comp. Engr., University of Texas at San Antonio, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of ECE & Computer Engineering, University of Technology, San Antonio, TX, USA","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"Dept of ECE & Comp. Engr., University of Texas at San Antonio, USA","institution_ids":["https://openalex.org/I45438204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046855484","display_name":"Yufang Jin","orcid":"https://orcid.org/0000-0002-9049-9807"},"institutions":[{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yufang Jin","raw_affiliation_strings":["Department of ECE & Computer Engineering, University of Technology, San Antonio, TX, USA","Dept of ECE & Comp. Engr., University of Texas at San Antonio, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of ECE & Computer Engineering, University of Technology, San Antonio, TX, USA","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"Dept of ECE & Comp. Engr., University of Texas at San Antonio, USA","institution_ids":["https://openalex.org/I45438204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068887242","display_name":"Yufei Huang","orcid":"https://orcid.org/0000-0001-6268-5357"},"institutions":[{"id":"https://openalex.org/I45438204","display_name":"The University of Texas at San Antonio","ror":"https://ror.org/01kd65564","country_code":"US","type":"education","lineage":["https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yufei Huang","raw_affiliation_strings":["Department of ECE & Computer Engineering, University of Technology, San Antonio, TX, USA","Dept of ECE & Comp. Engr., University of Texas at San Antonio, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of ECE & Computer Engineering, University of Technology, San Antonio, TX, USA","institution_ids":["https://openalex.org/I45438204"]},{"raw_affiliation_string":"Dept of ECE & Comp. Engr., University of Texas at San Antonio, USA","institution_ids":["https://openalex.org/I45438204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017106083","display_name":"Ying Ann Chiao","orcid":"https://orcid.org/0000-0002-1256-4335"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas at San Antonio Health Science Center","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966","https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ying Ann Chiao","raw_affiliation_strings":["Health Science Center, University of Technology, San Antonio, TX, USA","University of Texas Health Science Center at San Antonio, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Health Science Center, University of Technology, San Antonio, TX, USA","institution_ids":["https://openalex.org/I165951966"]},{"raw_affiliation_string":"University of Texas Health Science Center at San Antonio, USA,","institution_ids":["https://openalex.org/I165951966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010896860","display_name":"Shou\u2010Jiang Gao","orcid":"https://orcid.org/0000-0001-6194-1742"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas at San Antonio Health Science Center","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966","https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shou-Jiang Gao","raw_affiliation_strings":["Health Science Center, University of Technology, San Antonio, TX, USA","University of Texas Health Science Center at San Antonio, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Health Science Center, University of Technology, San Antonio, TX, USA","institution_ids":["https://openalex.org/I165951966"]},{"raw_affiliation_string":"University of Texas Health Science Center at San Antonio, USA,","institution_ids":["https://openalex.org/I165951966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058202537","display_name":"Merry L. Lindsey","orcid":"https://orcid.org/0000-0002-4090-0391"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas at San Antonio Health Science Center","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966","https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Merry Lindsey","raw_affiliation_strings":["Health Science Center, University of Technology, San Antonio, TX, USA","University of Texas Health Science Center at San Antonio, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Health Science Center, University of Technology, San Antonio, TX, USA","institution_ids":["https://openalex.org/I165951966"]},{"raw_affiliation_string":"University of Texas Health Science Center at San Antonio, USA,","institution_ids":["https://openalex.org/I165951966"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100689057","display_name":"Yidong Chen","orcid":"https://orcid.org/0000-0001-6806-2185"},"institutions":[{"id":"https://openalex.org/I165951966","display_name":"The University of Texas at San Antonio Health Science Center","ror":"https://ror.org/02f6dcw23","country_code":"US","type":"education","lineage":["https://openalex.org/I165951966","https://openalex.org/I45438204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yidong Chen","raw_affiliation_strings":["Health Science Center, University of Technology, San Antonio, TX, USA","University of Texas Health Science Center at San Antonio, USA,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Health Science Center, University of Technology, San Antonio, TX, USA","institution_ids":["https://openalex.org/I165951966"]},{"raw_affiliation_string":"University of Texas Health Science Center at San Antonio, USA,","institution_ids":["https://openalex.org/I165951966"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.13808493,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"22","issue":null,"first_page":"173","last_page":"178"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9901000261306763,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.761774480342865},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6701887249946594},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5710799694061279},{"id":"https://openalex.org/keywords/temporal-database","display_name":"Temporal database","score":0.5324923396110535},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.5050178170204163},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.47969719767570496},{"id":"https://openalex.org/keywords/time-series","display_name":"Time series","score":0.4610089659690857},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3120431900024414},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.18175968527793884},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14121279120445251},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.08023056387901306}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.761774480342865},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6701887249946594},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5710799694061279},{"id":"https://openalex.org/C77277458","wikidata":"https://www.wikidata.org/wiki/Q1969246","display_name":"Temporal database","level":2,"score":0.5324923396110535},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.5050178170204163},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.47969719767570496},{"id":"https://openalex.org/C151406439","wikidata":"https://www.wikidata.org/wiki/Q186588","display_name":"Time series","level":2,"score":0.4610089659690857},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3120431900024414},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.18175968527793884},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14121279120445251},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.08023056387901306}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibmw.2010.5703794","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2010.5703794","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W151863654","https://openalex.org/W1507743750","https://openalex.org/W1537039776","https://openalex.org/W1548499384","https://openalex.org/W1561522422","https://openalex.org/W1985555012","https://openalex.org/W1992165506","https://openalex.org/W2000729461","https://openalex.org/W2007639993","https://openalex.org/W2020302859","https://openalex.org/W2090240281","https://openalex.org/W2108675631","https://openalex.org/W2135000328","https://openalex.org/W2135187880","https://openalex.org/W2144821627","https://openalex.org/W2150926065","https://openalex.org/W2153823758","https://openalex.org/W2156852882","https://openalex.org/W2172165822","https://openalex.org/W2313167421","https://openalex.org/W4248126734","https://openalex.org/W6606194391","https://openalex.org/W6681747489"],"related_works":["https://openalex.org/W2804364458","https://openalex.org/W4298130764","https://openalex.org/W2132641928","https://openalex.org/W2090259340","https://openalex.org/W4310225030","https://openalex.org/W2083665254","https://openalex.org/W2393816671","https://openalex.org/W1603736412","https://openalex.org/W1534720161","https://openalex.org/W2804957450"],"abstract_inverted_index":{"Temporal":[0],"clustering":[1],"of":[2,14,83],"time":[3,62],"series":[4],"data":[5,32,92],"is":[6],"a":[7,21,60,98],"powerful":[8],"tool":[9],"to":[10,29,42,55,74,90],"delaminate":[11],"the":[12,106],"dynamics":[13],"transcription":[15],"and":[16,93,123],"interactions":[17],"among":[18],"genes":[19,49],"on":[20,80],"large":[22],"scale.":[23],"Different":[24],"algorithms":[25],"have":[26],"been":[27,102],"proposed":[28],"organize":[30],"experimental":[31,95],"with":[33,105],"meaningful":[34],"biological":[35],"clusters;":[36],"however,":[37],"these":[38],"approaches":[39],"often":[40],"fail":[41],"generate":[43],"well-defined":[44],"temporal":[45,77,121],"clusters,":[46],"especially":[47],"when":[48],"exert":[50],"their":[51],"functions":[52],"or":[53],"response":[54],"stimulation":[56],"coordinately":[57],"only":[58],"in":[59],"short":[61],"span.":[63],"In":[64],"this":[65],"study,":[66],"we":[67],"propose":[68],"an":[69],"algorithm":[70,87,118],"using":[71,116],"sliding":[72],"windows":[73],"identify":[75],"different":[76],"patterns":[78],"based":[79],"fold":[81],"changes":[82],"gene":[84],"expression.":[85],"The":[86,113],"was":[88],"applied":[89],"simulated":[91],"real":[94],"data.":[96],"Furthermore,":[97],"comparison":[99],"study":[100],"has":[101],"carried":[103],"out":[104],"clusters":[107,115],"obtained":[108],"from":[109],"commercial":[110],"software":[111],"packages.":[112],"identified":[114],"our":[117],"demonstrated":[119],"better":[120],"matching":[122],"consistency.":[124]},"counts_by_year":[{"year":2019,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
