{"id":"https://openalex.org/W2137846650","doi":"https://doi.org/10.1109/bibmw.2010.5703766","title":"PBSK browser: Navigate biological pathways of PSI-MI, BioPAX, SBML and KGML formats","display_name":"PBSK browser: Navigate biological pathways of PSI-MI, BioPAX, SBML and KGML formats","publication_year":2010,"publication_date":"2010-12-01","ids":{"openalex":"https://openalex.org/W2137846650","doi":"https://doi.org/10.1109/bibmw.2010.5703766","mag":"2137846650"},"language":"en","primary_location":{"id":"doi:10.1109/bibmw.2010.5703766","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2010.5703766","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113747757","display_name":"Donglin Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Donglin Huang","raw_affiliation_strings":["Department of Bioinformatics, College of Life Sciences","James D. Watson Institute of Genome Sciences, Zhejiang University, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, College of Life Sciences","institution_ids":[]},{"raw_affiliation_string":"James D. Watson Institute of Genome Sciences, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103560674","display_name":"Yi-ling Huang","orcid":null},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiling Huang","raw_affiliation_strings":["Department of Bioinformatics, College of Life Sciences","Department of Bioinformatics, College of Life Sciences, University of Zhejiang, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, College of Life Sciences","institution_ids":[]},{"raw_affiliation_string":"Department of Bioinformatics, College of Life Sciences, University of Zhejiang, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108074172","display_name":"Christian Klukas","orcid":"https://orcid.org/0000-0001-7956-0294"},"institutions":[{"id":"https://openalex.org/I4210127902","display_name":"Leibniz-Institut f\u00fcr Pflanzengenetik und Kulturpflanzenforschung (IPK)","ror":"https://ror.org/02skbsp27","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210127902"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christian Klukas","raw_affiliation_strings":["Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Genetics, Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany","institution_ids":["https://openalex.org/I4210127902"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001882549","display_name":"Ralf Hofest\u00e4dt","orcid":null},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ralf Hofestadt","raw_affiliation_strings":["Bioinformatics/Medical Informatics Department, Bielefeld University, Bielefeld, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics/Medical Informatics Department, Bielefeld University, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100423292","display_name":"Ming Chen","orcid":"https://orcid.org/0000-0002-9677-1699"},"institutions":[{"id":"https://openalex.org/I76130692","display_name":"Zhejiang University","ror":"https://ror.org/00a2xv884","country_code":"CN","type":"education","lineage":["https://openalex.org/I76130692"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ming Chen","raw_affiliation_strings":["Department of Bioinformatics, College of Life Sciences","James D. Watson Institute of Genome Sciences, Zhejiang University, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, College of Life Sciences","institution_ids":[]},{"raw_affiliation_string":"James D. Watson Institute of Genome Sciences, Zhejiang University, Hangzhou, China","institution_ids":["https://openalex.org/I76130692"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.21976574,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"1937","issue":null,"first_page":"13","last_page":"18"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sbml","display_name":"SBML","score":0.971817135810852},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8249937295913696},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5863634943962097},{"id":"https://openalex.org/keywords/markup-language","display_name":"Markup language","score":0.5770471096038818},{"id":"https://openalex.org/keywords/file-format","display_name":"File format","score":0.49595531821250916},{"id":"https://openalex.org/keywords/file-transfer-protocol","display_name":"File Transfer Protocol","score":0.4736163318157196},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4727426767349243},{"id":"https://openalex.org/keywords/html","display_name":"HTML","score":0.4267407953739166},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.37932249903678894},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3156057596206665},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.3152993321418762},{"id":"https://openalex.org/keywords/web-page","display_name":"Web page","score":0.23787614703178406},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.23737525939941406},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.15046191215515137}],"concepts":[{"id":"https://openalex.org/C87186988","wikidata":"https://www.wikidata.org/wiki/Q452197","display_name":"SBML","level":4,"score":0.971817135810852},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8249937295913696},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5863634943962097},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.5770471096038818},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.49595531821250916},{"id":"https://openalex.org/C169485995","wikidata":"https://www.wikidata.org/wiki/Q42283","display_name":"File Transfer Protocol","level":3,"score":0.4736163318157196},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4727426767349243},{"id":"https://openalex.org/C138708601","wikidata":"https://www.wikidata.org/wiki/Q8811","display_name":"HTML","level":3,"score":0.4267407953739166},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.37932249903678894},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3156057596206665},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.3152993321418762},{"id":"https://openalex.org/C21959979","wikidata":"https://www.wikidata.org/wiki/Q36774","display_name":"Web page","level":2,"score":0.23787614703178406},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.23737525939941406},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.15046191215515137}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibmw.2010.5703766","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibmw.2010.5703766","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1597340042","https://openalex.org/W2001758733","https://openalex.org/W2006933206","https://openalex.org/W2038264484","https://openalex.org/W2069162648","https://openalex.org/W2107062718","https://openalex.org/W2107879810","https://openalex.org/W2142302575","https://openalex.org/W2143969914","https://openalex.org/W2146384526","https://openalex.org/W2147714160","https://openalex.org/W2150908245","https://openalex.org/W2159482845","https://openalex.org/W2159675211","https://openalex.org/W2315135172","https://openalex.org/W2772934464","https://openalex.org/W4211208250","https://openalex.org/W6676287438"],"related_works":["https://openalex.org/W2082621456","https://openalex.org/W2150908245","https://openalex.org/W2128782793","https://openalex.org/W2981332207","https://openalex.org/W2211443823","https://openalex.org/W2146744007","https://openalex.org/W2040642413","https://openalex.org/W3048335229","https://openalex.org/W2100525485","https://openalex.org/W2110227479"],"abstract_inverted_index":{"Recently":[0],"more":[1,3],"and":[2,18,35,42,57,106],"public":[4],"biological":[5],"pathway":[6,13,30,40],"databases":[7],"support":[8],"at":[9,130],"least":[10],"one":[11],"standard":[12,29],"format,":[14],"e.g.":[15],"PSI-MI,":[16],"BioPAX":[17],"SBML,":[19,104],"accessible":[20],"from":[21,80,108],"either":[22],"FTP":[23],"downloads":[24],"or":[25],"HTTP":[26],"downloads.":[27],"These":[28],"formats":[31],"are":[32,36,51],"machine":[33],"readable":[34],"often":[37],"used":[38],"for":[39,54,64,73],"integration":[41],"aggregation":[43],"as":[44,46],"well":[45],"visualization,":[47],"analysis,":[48],"but":[49],"they":[50],"not":[52,71],"well-suited":[53],"unassisted":[55],"comprehension":[56],"inspection.":[58],"However":[59],"it":[60],"is":[61,70,99,127],"something":[62],"miserable":[63],"human":[65],"to":[66,75,101,110],"read":[67],"them.":[68],"It":[69],"easy":[72],"us":[74],"get":[76],"knowledge":[77],"we":[78,90],"want":[79],"files":[81],"in":[82,112,122],"these":[83],"common":[84],"formats.":[85],"To":[86],"address":[87],"this":[88],"problem":[89],"present":[91],"a":[92],"web":[93],"service":[94],"named":[95],"PBSK":[96,125],"Browser":[97,126],"which":[98],"designed":[100],"translate":[102],"BioPAX,":[103],"PSI-MI":[105],"KGML":[107],"machine-readable":[109],"human-readable":[111],"the":[113,123],"form":[114],"of":[115],"HTML":[116],"tables,":[117],"presenting":[118],"all":[119],"detail":[120],"annotations":[121],"files.":[124],"freely":[128],"available":[129],"http://bis.zju.edu.cn/pbsk.":[131]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
