{"id":"https://openalex.org/W7126053172","doi":"https://doi.org/10.1109/bibm66473.2025.11357109","title":"Cardiac Antisense Long Noncoding RNAs may Exert Their Function via RNA:DNA Triplex Sites","display_name":"Cardiac Antisense Long Noncoding RNAs may Exert Their Function via RNA:DNA Triplex Sites","publication_year":2025,"publication_date":"2025-12-15","ids":{"openalex":"https://openalex.org/W7126053172","doi":"https://doi.org/10.1109/bibm66473.2025.11357109"},"language":null,"primary_location":{"id":"doi:10.1109/bibm66473.2025.11357109","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm66473.2025.11357109","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5124229023","display_name":"Benjamin Soibam","orcid":null},"institutions":[{"id":"https://openalex.org/I16277215","display_name":"University of Houston - Downtown","ror":"https://ror.org/05mj6fy81","country_code":"US","type":"education","lineage":["https://openalex.org/I16277215"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Benjamin Soibam","raw_affiliation_strings":["Computer Science and Engineering Technology, University of Houston-Downtown,Houston,USA"],"affiliations":[{"raw_affiliation_string":"Computer Science and Engineering Technology, University of Houston-Downtown,Houston,USA","institution_ids":["https://openalex.org/I16277215"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5124266385","display_name":"Yashvi Shastri","orcid":null},"institutions":[{"id":"https://openalex.org/I4210118994","display_name":"Children\u2019s Village","ror":"https://ror.org/030vvqf88","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210118994"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yashvi Shastri","raw_affiliation_strings":["The Village School,Houston,USA"],"affiliations":[{"raw_affiliation_string":"The Village School,Houston,USA","institution_ids":["https://openalex.org/I4210118994"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5124229023"],"corresponding_institution_ids":["https://openalex.org/I16277215"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.68593609,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"7762","last_page":"7763"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.8310999870300293,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.8310999870300293,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.04560000076889992,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12610","display_name":"RNA regulation and disease","score":0.04050000011920929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.6362000107765198},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5902000069618225},{"id":"https://openalex.org/keywords/long-non-coding-rna","display_name":"Long non-coding RNA","score":0.5457000136375427},{"id":"https://openalex.org/keywords/antisense-rna","display_name":"Antisense RNA","score":0.4848000109195709},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4147999882698059},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.414000004529953},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.39719998836517334}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6758000254631042},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.6362000107765198},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5902000069618225},{"id":"https://openalex.org/C62203573","wikidata":"https://www.wikidata.org/wiki/Q15087973","display_name":"Long non-coding RNA","level":4,"score":0.5457000136375427},{"id":"https://openalex.org/C202416437","wikidata":"https://www.wikidata.org/wiki/Q423832","display_name":"Antisense RNA","level":4,"score":0.4848000109195709},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.45239999890327454},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4147999882698059},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.414000004529953},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.39719998836517334},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.39489999413490295},{"id":"https://openalex.org/C512185932","wikidata":"https://www.wikidata.org/wiki/Q28745","display_name":"Nucleotide","level":3,"score":0.3919999897480011},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.3792000114917755},{"id":"https://openalex.org/C127561419","wikidata":"https://www.wikidata.org/wiki/Q224527","display_name":"Downregulation and upregulation","level":3,"score":0.36719998717308044},{"id":"https://openalex.org/C143141573","wikidata":"https://www.wikidata.org/wiki/Q7450971","display_name":"Sense (electronics)","level":2,"score":0.35670000314712524},{"id":"https://openalex.org/C179255354","wikidata":"https://www.wikidata.org/wiki/Q284416","display_name":"Small nucleolar RNA","level":5,"score":0.320499986410141},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.29089999198913574},{"id":"https://openalex.org/C3017666073","wikidata":"https://www.wikidata.org/wiki/Q1764062","display_name":"Base sequence","level":3,"score":0.28519999980926514},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.2851000130176544},{"id":"https://openalex.org/C194993378","wikidata":"https://www.wikidata.org/wiki/Q427087","display_name":"Non-coding RNA","level":4,"score":0.26809999346733093}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm66473.2025.11357109","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm66473.2025.11357109","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W2010231497","https://openalex.org/W2049098933","https://openalex.org/W2071271349","https://openalex.org/W2097795961","https://openalex.org/W2126504590","https://openalex.org/W2154624139","https://openalex.org/W2162105224","https://openalex.org/W2174605830","https://openalex.org/W2538571252","https://openalex.org/W2912031480","https://openalex.org/W2943588752","https://openalex.org/W3164374679","https://openalex.org/W4282014842"],"related_works":[],"abstract_inverted_index":{"Long":[0],"noncoding":[1],"RNAs":[2,6],"or":[3],"IncRNAs":[4,88,96],"are":[5,8,42,104,112],"which":[7,22,86],"at":[9],"least":[10],"200":[11],"nucleotides":[12],"long":[13],"and":[14],"do":[15],"not":[16],"code":[17],"for":[18],"proteins.":[19],"Antisense":[20],"IncRNAs,":[21,30],"comprise":[23],"of":[24,36,82],"<tex":[25],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[26],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">$\\text{4":[27],"0":[28],"\\%}$</tex>":[29],"originate":[31],"from":[32],"the":[33,83],"opposite":[34],"strand":[35],"protein-coding":[37,55],"genes.":[38],"Even":[39],"though":[40],"they":[41],"considered":[43],"to":[44,62,122],"be":[45,63,80],"important":[46],"factors":[47],"in":[48,51,98,117],"gene":[49],"regulation":[50],"conjunction":[52],"with":[53,114],"their":[54,57,90],"genes,":[56],"functional":[58,125],"mechanisms":[59,84],"still":[60],"remain":[61],"elucidated":[64],"completely.":[65],"In":[66],"this":[67],"paper,":[68],"we":[69],"provide":[70],"preliminary":[71],"evidence":[72],"that":[73,75],"indicates":[74],"RNA-DNA":[76],"triplex":[77,102,110],"sites":[78,103,111],"can":[79],"one":[81],"through":[85],"antisense":[87,95],"exert":[89],"function.":[91],"We":[92],"identify":[93],"8":[94],"upregulated":[97],"human":[99],"cardiomyocytes":[100],"whose":[101],"distributed":[105],"across":[106],"multiple":[107],"chromosomes.":[108],"These":[109],"associated":[113],"genes":[115],"involved":[116],"biological":[118],"processes":[119],"often":[120],"linked":[121],"other":[123],"known":[124],"IncRNAs.":[126]},"counts_by_year":[],"updated_date":"2026-02-01T03:34:12.195049","created_date":"2026-01-30T00:00:00"}
