{"id":"https://openalex.org/W7126041714","doi":"https://doi.org/10.1109/bibm66473.2025.11356853","title":"ADESys: A Modular System for ADE Identification Research with LLM-RAG Integration","display_name":"ADESys: A Modular System for ADE Identification Research with LLM-RAG Integration","publication_year":2025,"publication_date":"2025-12-15","ids":{"openalex":"https://openalex.org/W7126041714","doi":"https://doi.org/10.1109/bibm66473.2025.11356853"},"language":null,"primary_location":{"id":"doi:10.1109/bibm66473.2025.11356853","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm66473.2025.11356853","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5124261766","display_name":"Xuehong Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xuehong Wu","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University,Changsha,China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University,Changsha,China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Junlong Ma","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I4210159865","display_name":"Xiangya Hospital Central South University","ror":"https://ror.org/05c1yfj14","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210159865"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junlong Ma","raw_affiliation_strings":["Xiangya Hospital, Central South University,Changsha,China"],"affiliations":[{"raw_affiliation_string":"Xiangya Hospital, Central South University,Changsha,China","institution_ids":["https://openalex.org/I4210159865","https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5124174253","display_name":"Guoping Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guoping Yang","raw_affiliation_strings":["Xiangya School of Pharmaceutical Sciences, Central South University,Changsha,China"],"affiliations":[{"raw_affiliation_string":"Xiangya School of Pharmaceutical Sciences, Central South University,Changsha,China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5124267017","display_name":"Min Li","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Li","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University,Changsha,China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University,Changsha,China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5124261766"],"corresponding_institution_ids":["https://openalex.org/I139660479"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.84044571,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"2982","last_page":"2987"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.3391000032424927,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.3391000032424927,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.1581999957561493,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11943","display_name":"Pharmacovigilance and Adverse Drug Reactions","score":0.14810000360012054,"subfield":{"id":"https://openalex.org/subfields/3005","display_name":"Toxicology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.7886000275611877},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.7688999772071838},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.588699996471405},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.5611000061035156},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5199999809265137},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.3765000104904175},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.3650999963283539},{"id":"https://openalex.org/keywords/system-integration","display_name":"System integration","score":0.36469998955726624},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.3610999882221222}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.7886000275611877},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.7688999772071838},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6383000016212463},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.588699996471405},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.5611000061035156},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5199999809265137},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.4659999907016754},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4499000012874603},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.39559999108314514},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.3765000104904175},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.3650999963283539},{"id":"https://openalex.org/C19527686","wikidata":"https://www.wikidata.org/wiki/Q1665453","display_name":"System integration","level":2,"score":0.36469998955726624},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.3610999882221222},{"id":"https://openalex.org/C32833848","wikidata":"https://www.wikidata.org/wiki/Q4115054","display_name":"Extensibility","level":2,"score":0.35409998893737793},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.3472999930381775},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.32899999618530273},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.3109000027179718},{"id":"https://openalex.org/C115925183","wikidata":"https://www.wikidata.org/wiki/Q1412694","display_name":"Knowledge-based systems","level":2,"score":0.3093999922275543},{"id":"https://openalex.org/C67186912","wikidata":"https://www.wikidata.org/wiki/Q367664","display_name":"Data modeling","level":2,"score":0.2919999957084656},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2919999957084656},{"id":"https://openalex.org/C145644426","wikidata":"https://www.wikidata.org/wiki/Q169411","display_name":"Unified Modeling Language","level":3,"score":0.2854999899864197},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.2847999930381775},{"id":"https://openalex.org/C56289545","wikidata":"https://www.wikidata.org/wiki/Q6423376","display_name":"Knowledge integration","level":3,"score":0.27810001373291016},{"id":"https://openalex.org/C105002631","wikidata":"https://www.wikidata.org/wiki/Q4833645","display_name":"Subject-matter expert","level":3,"score":0.27730000019073486},{"id":"https://openalex.org/C135257023","wikidata":"https://www.wikidata.org/wiki/Q691358","display_name":"Domain-specific language","level":2,"score":0.27250000834465027},{"id":"https://openalex.org/C2779439875","wikidata":"https://www.wikidata.org/wiki/Q1078276","display_name":"Natural language understanding","level":3,"score":0.2572000026702881},{"id":"https://openalex.org/C58328972","wikidata":"https://www.wikidata.org/wiki/Q184609","display_name":"Expert system","level":2,"score":0.25200000405311584}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm66473.2025.11356853","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm66473.2025.11356853","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6661608815193176,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G2614071909","display_name":null,"funder_award_id":"2025JJ30025","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"}],"funders":[{"id":"https://openalex.org/F4320322843","display_name":"Natural Science Foundation of\u00a0Hunan Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1460847897","https://openalex.org/W2119463649","https://openalex.org/W2304094619","https://openalex.org/W2414671171","https://openalex.org/W2908038241","https://openalex.org/W2909597216","https://openalex.org/W2911489562","https://openalex.org/W3127112941","https://openalex.org/W4211008314","https://openalex.org/W4297253404","https://openalex.org/W4313460860","https://openalex.org/W4327545654","https://openalex.org/W4381598012","https://openalex.org/W4387445509","https://openalex.org/W4391136507","https://openalex.org/W4391577874","https://openalex.org/W4393287322","https://openalex.org/W4395045785","https://openalex.org/W4402690491","https://openalex.org/W4404826297","https://openalex.org/W4406039466","https://openalex.org/W4410418451","https://openalex.org/W4410447540"],"related_works":[],"abstract_inverted_index":{"Identifying":[0],"Adverse":[1],"Drug":[2],"Events":[3],"(ADE)":[4],"from":[5],"clinical":[6,29],"course":[7],"records":[8],"presents":[9,83],"a":[10,85,105,139],"long-standing":[11],"challenge":[12],"in":[13],"the":[14,23,62,97],"field":[15],"of":[16,28,33,64,99,134],"natural":[17],"language":[18],"processing,":[19],"primarily":[20],"due":[21],"to":[22,54,89],"semantic":[24],"complexity":[25],"and":[26,38,72,101,111,120,127],"domain-specificity":[27],"texts.":[30],"The":[31],"development":[32],"Large":[34],"Language":[35],"Models":[36],"(LLMs)":[37],"Retrieval-Augmented":[39],"Generation":[40],"(RAG)":[41],"offers":[42],"new":[43],"possibilities":[44],"for":[45,142],"addressing":[46],"this":[47,81],"challenge.":[48],"However,":[49],"when":[50],"applying":[51],"these":[52,79],"technologies":[53],"ADE":[55,93,144],"identification":[56,94,145],"research,":[57],"key":[58],"constraints":[59],"exist,":[60],"including":[61],"construction":[63],"domain":[65],"knowledge":[66,113],"bases,":[67],"efficient":[68],"retrieval,":[69],"precise":[70],"prompting,":[71],"high":[73],"clinician":[74],"usage":[75],"threshold.":[76],"To":[77],"address":[78],"constraints,":[80],"paper":[82],"ADESys,":[84],"system":[86],"specifically":[87],"designed":[88],"support":[90],"research":[91],"on":[92],"tasks":[95],"through":[96],"integration":[98],"LLM":[100,115],"RAG.":[102],"ADESys":[103,130],"adopts":[104],"modular":[106],"architecture":[107],"covering":[108],"dataset":[109],"management":[110],"annotation,":[112],"organization,":[114],"model":[116],"integration,":[117],"prompt":[118],"engineering,":[119],"experimental":[121],"validation.":[122],"By":[123],"offering":[124],"an":[125],"open":[126],"extensible":[128],"platform,":[129],"enables":[131],"in-depth":[132],"exploration":[133],"LLM-RAG":[135],"components,":[136],"serving":[137],"as":[138],"comprehensive":[140],"tool":[141],"advancing":[143],"research.":[146]},"counts_by_year":[],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2026-01-30T00:00:00"}
