{"id":"https://openalex.org/W7126118471","doi":"https://doi.org/10.1109/bibm66473.2025.11356811","title":"The GenDAI Cloud-Native Infrastructure and Data Stewardship for Clinical Metagenomic Diagnostics","display_name":"The GenDAI Cloud-Native Infrastructure and Data Stewardship for Clinical Metagenomic Diagnostics","publication_year":2025,"publication_date":"2025-12-15","ids":{"openalex":"https://openalex.org/W7126118471","doi":"https://doi.org/10.1109/bibm66473.2025.11356811"},"language":null,"primary_location":{"id":"doi:10.1109/bibm66473.2025.11356811","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm66473.2025.11356811","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002175542","display_name":"Philippe Tamla","orcid":"https://orcid.org/0000-0002-0786-4253"},"institutions":[{"id":"https://openalex.org/I120691247","display_name":"FernUniversit\u00e4t in Hagen","ror":"https://ror.org/04tkkr536","country_code":"DE","type":"education","lineage":["https://openalex.org/I120691247"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Philippe Tamla","raw_affiliation_strings":["University of Hagen,Germany"],"affiliations":[{"raw_affiliation_string":"University of Hagen,Germany","institution_ids":["https://openalex.org/I120691247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030927255","display_name":"Thomas Krause","orcid":"https://orcid.org/0000-0003-4912-1703"},"institutions":[{"id":"https://openalex.org/I120691247","display_name":"FernUniversit\u00e4t in Hagen","ror":"https://ror.org/04tkkr536","country_code":"DE","type":"education","lineage":["https://openalex.org/I120691247"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Krause","raw_affiliation_strings":["University of Hagen,Germany"],"affiliations":[{"raw_affiliation_string":"University of Hagen,Germany","institution_ids":["https://openalex.org/I120691247"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Matthias Hemmje","orcid":null},"institutions":[{"id":"https://openalex.org/I120691247","display_name":"FernUniversit\u00e4t in Hagen","ror":"https://ror.org/04tkkr536","country_code":"DE","type":"education","lineage":["https://openalex.org/I120691247"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Matthias Hemmje","raw_affiliation_strings":["University of Hagen,Germany"],"affiliations":[{"raw_affiliation_string":"University of Hagen,Germany","institution_ids":["https://openalex.org/I120691247"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039169968","display_name":"F. Monti","orcid":null},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Flavia Monti","raw_affiliation_strings":["Sapienza University,Rome,Italy"],"affiliations":[{"raw_affiliation_string":"Sapienza University,Rome,Italy","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056500931","display_name":"Francesca De Luzi","orcid":"https://orcid.org/0000-0002-9896-2528"},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Francesca De Luzi","raw_affiliation_strings":["Sapienza University,Rome,Italy"],"affiliations":[{"raw_affiliation_string":"Sapienza University,Rome,Italy","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068425882","display_name":"Massimo Mecella","orcid":"https://orcid.org/0000-0002-9730-8882"},"institutions":[{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Massimo Mecella","raw_affiliation_strings":["Sapienza University,Rome,Italy"],"affiliations":[{"raw_affiliation_string":"Sapienza University,Rome,Italy","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5124178098","display_name":"Bruno Andrade","orcid":null},"institutions":[{"id":"https://openalex.org/I4210100923","display_name":"Munster Technological University","ror":"https://ror.org/013xpqh61","country_code":"IE","type":"facility","lineage":["https://openalex.org/I4210100923"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Bruno Andrade","raw_affiliation_strings":["Munster Technological University (MTU),Ireland"],"affiliations":[{"raw_affiliation_string":"Munster Technological University (MTU),Ireland","institution_ids":["https://openalex.org/I4210100923"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064219476","display_name":"Paolo Buono","orcid":"https://orcid.org/0000-0002-1421-3686"},"institutions":[{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Paolo Buono","raw_affiliation_strings":["University of Bari,Italy"],"affiliations":[{"raw_affiliation_string":"University of Bari,Italy","institution_ids":["https://openalex.org/I5561750"]}]},{"author_position":"last","author":{"id":null,"display_name":"Andrea Molinari","orcid":null},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Andrea Molinari","raw_affiliation_strings":["University of Trento,Italy"],"affiliations":[{"raw_affiliation_string":"University of Trento,Italy","institution_ids":["https://openalex.org/I193223587"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5002175542"],"corresponding_institution_ids":["https://openalex.org/I120691247"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.89284425,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"7229","last_page":"7236"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.8999000191688538,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.8999000191688538,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.01850000023841858,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.013399999588727951,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8342999815940857},{"id":"https://openalex.org/keywords/verifiable-secret-sharing","display_name":"Verifiable secret sharing","score":0.6657999753952026},{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.5857999920845032},{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.5453000068664551},{"id":"https://openalex.org/keywords/stewardship","display_name":"Stewardship (theology)","score":0.524399995803833},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.42160001397132874},{"id":"https://openalex.org/keywords/trustworthiness","display_name":"Trustworthiness","score":0.4083000123500824}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8342999815940857},{"id":"https://openalex.org/C85847156","wikidata":"https://www.wikidata.org/wiki/Q59015987","display_name":"Verifiable secret sharing","level":3,"score":0.6657999753952026},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5997999906539917},{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.5857999920845032},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.5453000068664551},{"id":"https://openalex.org/C2777950569","wikidata":"https://www.wikidata.org/wiki/Q17021836","display_name":"Stewardship (theology)","level":3,"score":0.524399995803833},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4943000078201294},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4693000018596649},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.42160001397132874},{"id":"https://openalex.org/C153701036","wikidata":"https://www.wikidata.org/wiki/Q659974","display_name":"Trustworthiness","level":2,"score":0.4083000123500824},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.3783999979496002},{"id":"https://openalex.org/C18762648","wikidata":"https://www.wikidata.org/wiki/Q42213","display_name":"Work (physics)","level":2,"score":0.3361999988555908},{"id":"https://openalex.org/C144559511","wikidata":"https://www.wikidata.org/wiki/Q2986279","display_name":"Principal (computer security)","level":2,"score":0.3361000120639801},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.3091000020503998},{"id":"https://openalex.org/C67186912","wikidata":"https://www.wikidata.org/wiki/Q367664","display_name":"Data modeling","level":2,"score":0.3089999854564667},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3073999881744385},{"id":"https://openalex.org/C112930515","wikidata":"https://www.wikidata.org/wiki/Q4389547","display_name":"Risk analysis (engineering)","level":1,"score":0.29739999771118164},{"id":"https://openalex.org/C168065819","wikidata":"https://www.wikidata.org/wiki/Q845566","display_name":"Debugging","level":2,"score":0.28679999709129333},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.2775000035762787},{"id":"https://openalex.org/C56739046","wikidata":"https://www.wikidata.org/wiki/Q192060","display_name":"Knowledge management","level":1,"score":0.2596000134944916},{"id":"https://openalex.org/C2985179714","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Work flow","level":2,"score":0.2565999925136566},{"id":"https://openalex.org/C98025372","wikidata":"https://www.wikidata.org/wiki/Q477538","display_name":"Systems architecture","level":3,"score":0.25220000743865967}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm66473.2025.11356811","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm66473.2025.11356811","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.5987442135810852}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1534432572","https://openalex.org/W1574680346","https://openalex.org/W2043498719","https://openalex.org/W2138199375","https://openalex.org/W2143677795","https://openalex.org/W2148317584","https://openalex.org/W2158342889","https://openalex.org/W2302501749","https://openalex.org/W2516809705","https://openalex.org/W2605897695","https://openalex.org/W2607211817","https://openalex.org/W2743948853","https://openalex.org/W2744999500","https://openalex.org/W2749040653","https://openalex.org/W2770256434","https://openalex.org/W2789238979","https://openalex.org/W2793958847","https://openalex.org/W2889646516","https://openalex.org/W2917207851","https://openalex.org/W2922523459","https://openalex.org/W2934450419","https://openalex.org/W2963276645","https://openalex.org/W3009935434","https://openalex.org/W3012501605","https://openalex.org/W3081194266","https://openalex.org/W3085477028","https://openalex.org/W3133702157","https://openalex.org/W3158391114","https://openalex.org/W3185912133","https://openalex.org/W3213819329","https://openalex.org/W4220821071","https://openalex.org/W4229377620","https://openalex.org/W4281490401","https://openalex.org/W4298006192","https://openalex.org/W4384345766","https://openalex.org/W4386776880","https://openalex.org/W4401402340","https://openalex.org/W7126013078"],"related_works":[],"abstract_inverted_index":{"This":[0,88],"paper":[1],"presents":[2],"a":[3,46,54,91],"cloud-native":[4,66],"architecture":[5,20],"for":[6,53,94],"clinical":[7,43],"metagenomic":[8,86],"diagnostics":[9],"developed":[10],"as":[11],"part":[12],"of":[13],"the":[14],"Horizon":[15],"Europe":[16],"project":[17],"GenDAI.":[18],"The":[19,68],"integrates":[21],"automated,":[22],"reproducible,":[23,82],"and":[24,37,50,65,74,84,106],"auditable":[25],"workflows":[26],"with":[27],"deterministic":[28,75],"elasticity,":[29],"compliant":[30],"data":[31,61],"stewardship,":[32],"explainable":[33],"Artificial":[34],"Intelligence":[35],"(AI),":[36],"verifiable":[38],"reporting.":[39,67],"Requirements":[40],"derived":[41],"from":[42],"practice":[44],"inform":[45],"unified":[47],"modeling,":[48,64],"implementation,":[49],"evaluation":[51],"strategy":[52],"modular":[55],"platform":[56],"that":[57],"combines":[58],"workflow":[59],"orchestration,":[60],"governance,":[62],"AI-powered":[63],"system":[69],"embeds":[70],"provenance-bydesign,":[71],"policy-as-code":[72],"enforcement,":[73],"elasticity":[76],"across":[77],"all":[78],"layers":[79],"to":[80],"enable":[81],"compliant,":[83],"trustworthy":[85],"diagnostics.":[87],"work":[89],"provides":[90],"principled":[92],"pathway":[93],"translating":[95],"research-grade":[96],"tools":[97],"into":[98],"regulator-ready":[99],"diagnostic":[100],"services":[101],"while":[102],"maintaining":[103],"transparency,":[104],"reproducibility,":[105],"long-term":[107],"trust.":[108]},"counts_by_year":[],"updated_date":"2026-03-25T23:56:10.502304","created_date":"2026-01-30T00:00:00"}
