{"id":"https://openalex.org/W7126080107","doi":"https://doi.org/10.1109/bibm66473.2025.11356123","title":"Multi-Omics Data Fusion for Colorectal Cancer Molecular Subtyping Using Sparse Multiple Canonical Correlation Analysis","display_name":"Multi-Omics Data Fusion for Colorectal Cancer Molecular Subtyping Using Sparse Multiple Canonical Correlation Analysis","publication_year":2025,"publication_date":"2025-12-15","ids":{"openalex":"https://openalex.org/W7126080107","doi":"https://doi.org/10.1109/bibm66473.2025.11356123"},"language":null,"primary_location":{"id":"doi:10.1109/bibm66473.2025.11356123","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm66473.2025.11356123","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5124215971","display_name":"Lingli He","orcid":null},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Lingli He","raw_affiliation_strings":["The Chinese University of Hong Kong, Shatin,Department of Surgery,Hong Kong SAR,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Chinese University of Hong Kong, Shatin,Department of Surgery,Hong Kong SAR,China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089528237","display_name":"Kai Song","orcid":"https://orcid.org/0000-0001-6792-7159"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Kai Song","raw_affiliation_strings":["The Chinese University of Hong Kong, Shatin,Department of Surgery,Hong Kong SAR,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Chinese University of Hong Kong, Shatin,Department of Surgery,Hong Kong SAR,China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110530916","display_name":"Sitan Qiao","orcid":null},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Sitan Qiao","raw_affiliation_strings":["The Chinese University of Hong Kong, Shatin,Department of Surgery,Hong Kong SAR,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Chinese University of Hong Kong, Shatin,Department of Surgery,Hong Kong SAR,China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074657792","display_name":"Yabin Chen","orcid":"https://orcid.org/0000-0002-5180-2009"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Yabin Chen","raw_affiliation_strings":["The Chinese University of Hong Kong, Shatin,Department of Surgery,Hong Kong SAR,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Chinese University of Hong Kong, Shatin,Department of Surgery,Hong Kong SAR,China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5124187630","display_name":"Jiang Li","orcid":null},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Jiang Li","raw_affiliation_strings":["The Chinese University of Hong Kong, Shatin,Department of Surgery,Hong Kong SAR,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Chinese University of Hong Kong, Shatin,Department of Surgery,Hong Kong SAR,China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055663278","display_name":"Qi Lin","orcid":"https://orcid.org/0000-0001-5026-1100"},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Lin Qi","raw_affiliation_strings":["The Chinese University of Hong Kong, Shatin,Department of Surgery,Hong Kong SAR,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Chinese University of Hong Kong, Shatin,Department of Surgery,Hong Kong SAR,China","institution_ids":["https://openalex.org/I177725633"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5124175112","display_name":"Xin Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I177725633","display_name":"Chinese University of Hong Kong","ror":"https://ror.org/00t33hh48","country_code":"HK","type":"education","lineage":["https://openalex.org/I177725633"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Xin Wang","raw_affiliation_strings":["The Chinese University of Hong Kong, Shatin,Department of Surgery,Hong Kong SAR,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Chinese University of Hong Kong, Shatin,Department of Surgery,Hong Kong SAR,China","institution_ids":["https://openalex.org/I177725633"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I177725633"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.79349561,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"947","last_page":"954"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.6111999750137329,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11297","display_name":"Ferroptosis and cancer prognosis","score":0.6111999750137329,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.1876000016927719,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.06360000371932983,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subtyping","display_name":"Subtyping","score":0.9793000221252441},{"id":"https://openalex.org/keywords/correlation","display_name":"Correlation","score":0.5333999991416931},{"id":"https://openalex.org/keywords/colorectal-cancer","display_name":"Colorectal cancer","score":0.4837999939918518},{"id":"https://openalex.org/keywords/omics","display_name":"Omics","score":0.40689998865127563},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.40119999647140503},{"id":"https://openalex.org/keywords/biomarker-discovery","display_name":"Biomarker discovery","score":0.4007999897003174},{"id":"https://openalex.org/keywords/precision-medicine","display_name":"Precision medicine","score":0.37049999833106995}],"concepts":[{"id":"https://openalex.org/C83852419","wikidata":"https://www.wikidata.org/wiki/Q2713292","display_name":"Subtyping","level":2,"score":0.9793000221252441},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6575999855995178},{"id":"https://openalex.org/C117220453","wikidata":"https://www.wikidata.org/wiki/Q5172842","display_name":"Correlation","level":2,"score":0.5333999991416931},{"id":"https://openalex.org/C526805850","wikidata":"https://www.wikidata.org/wiki/Q188874","display_name":"Colorectal cancer","level":3,"score":0.4837999939918518},{"id":"https://openalex.org/C157585117","wikidata":"https://www.wikidata.org/wiki/Q158666","display_name":"Omics","level":2,"score":0.40689998865127563},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.40119999647140503},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.4007999897003174},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.38690000772476196},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.37049999833106995},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3668000102043152},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.364300012588501},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.35429999232292175},{"id":"https://openalex.org/C138958017","wikidata":"https://www.wikidata.org/wiki/Q190087","display_name":"Data type","level":2,"score":0.3215999901294708},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.29760000109672546},{"id":"https://openalex.org/C153874254","wikidata":"https://www.wikidata.org/wiki/Q115542","display_name":"Canonical correlation","level":2,"score":0.2937999963760376},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.2874999940395355},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.2806999981403351},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.2793999910354614},{"id":"https://openalex.org/C190727270","wikidata":"https://www.wikidata.org/wiki/Q874745","display_name":"DNA methylation","level":4,"score":0.26440000534057617},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2597000002861023},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.25870001316070557}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm66473.2025.11356123","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm66473.2025.11356123","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.7459871768951416,"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities"}],"awards":[{"id":"https://openalex.org/G2490453417","display_name":null,"funder_award_id":"2021B1515020042","funder_id":"https://openalex.org/F4320337111","funder_display_name":"Basic and Applied Basic Research Foundation of Guangdong Province"}],"funders":[{"id":"https://openalex.org/F4320337111","display_name":"Basic and Applied Basic Research Foundation of Guangdong Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W1559908735","https://openalex.org/W1934094702","https://openalex.org/W1987219048","https://openalex.org/W2008929650","https://openalex.org/W2023461603","https://openalex.org/W2033751993","https://openalex.org/W2037900813","https://openalex.org/W2075952448","https://openalex.org/W2100239923","https://openalex.org/W2115462905","https://openalex.org/W2130430382","https://openalex.org/W2139967559","https://openalex.org/W2158485828","https://openalex.org/W2218734540","https://openalex.org/W2230320310","https://openalex.org/W2262414037","https://openalex.org/W2419634504","https://openalex.org/W2512899508","https://openalex.org/W2600453489","https://openalex.org/W2617865703","https://openalex.org/W2618505595","https://openalex.org/W2655262992","https://openalex.org/W2752829361","https://openalex.org/W2783685429","https://openalex.org/W2886498337","https://openalex.org/W2921768356","https://openalex.org/W2950878899","https://openalex.org/W2972895479","https://openalex.org/W3000311037","https://openalex.org/W3003192283","https://openalex.org/W3027052013","https://openalex.org/W3080773873","https://openalex.org/W3092124539","https://openalex.org/W3173875945","https://openalex.org/W3217594228","https://openalex.org/W4220915201","https://openalex.org/W4248220371","https://openalex.org/W4252676770","https://openalex.org/W4280562132","https://openalex.org/W4283716873","https://openalex.org/W4294141750","https://openalex.org/W4315754639"],"related_works":[],"abstract_inverted_index":{"Molecular":[0,169],"subtyping":[1,36,84,149],"is":[2,20,252],"an":[3],"important":[4],"strategy":[5],"to":[6,176,238],"dissect":[7],"cancer":[8,18],"heterogeneity":[9,51],"and":[10,27,107,120,131,137,142,155,166,203],"a":[11,28,70,81,194],"key":[12],"step":[13],"towards":[14],"precision":[15],"oncology.":[16],"Colorectal":[17],"(CRC)":[19],"one":[21],"of":[22,31,74,117,144,189,227,242],"the":[23,50,75,95,114,145,158,177,199,228,236],"most":[24],"common":[25],"malignancies":[26],"leading":[29],"cause":[30],"cancer-related":[32],"deaths.":[33],"However,":[34],"pre-existing":[35],"frameworks":[37],"for":[38],"CRC":[39,83,97],"were":[40],"mainly":[41],"based":[42,86],"on":[43,87,198],"single-omics":[44,208,222],"data,":[45],"especially":[46],"transcriptomic":[47],"profiles,":[48],"ignoring":[49],"at":[52,254],"other":[53,243],"omics":[54,118,244],"levels,":[55],"such":[56],"as":[57,231],"epigenomics.":[58],"Compared":[59],"with":[60,103,126],"single":[61],"omics-based":[62],"approaches,":[63],"integrative":[64],"multi-omics":[65,82],"data":[66,119,223,230],"analysis":[67],"may":[68,180],"provide":[69],"more":[71,127],"holistic":[72],"understanding":[73],"collected":[76],"heterogeneity.":[77],"Herein,":[78],"we":[79,112,191],"propose":[80],"framework":[85],"sparse":[88],"multiple":[89],"canonical":[90],"correlation":[91],"analysis,":[92],"trained":[93,197],"by":[94,219],"TCGA":[96,201],"cohort":[98],"involving":[99],"over":[100],"300":[101],"samples":[102],"paired":[104],"RNAseq,":[105],"microRNAseq,":[106],"DNA":[108],"methylation":[109],"data.":[110,249],"Specifically,":[111],"fused":[113,200],"three":[115],"types":[116],"identified":[121],"five":[122],"distinct":[123,163],"subtypes":[124],"(MSCRC1-5)":[125],"meaningful":[128],"molecular":[129,148],"characteristics":[130],"higher":[132],"clinical":[133,167],"relevance.":[134],"MSCRC1,":[135],"2":[136,143],"5":[138],"recapitulated":[139,157],"CMS1,":[140],"3,":[141],"well-established":[146],"consensus":[147],"(CMS)":[150],"system.":[151],"Interestingly,":[152],"both":[153],"MSCRC3":[154,178],"MSCRC4":[156],"CMS4mesenchymal":[159],"subtype":[160,179],"but":[161],"showed":[162],"biological":[164],"properties":[165],"outcomes.":[168],"biomarker":[170],"analyses":[171],"revealed":[172],"that":[173,213],"patients":[174],"assigned":[175],"potentially":[181],"benefit":[182],"from":[183,247],"immunotherapy.":[184],"To":[185],"enable":[186],"general":[187],"applicability":[188,237],"MSCRC,":[190],"next":[192],"built":[193],"multiomics":[195],"classifier":[196],"dataset":[202],"validated":[204],"using":[205],"two":[206],"independent":[207],"datasets.":[209],"Our":[210,250],"results":[211],"demonstrated":[212],"MSCRC":[214],"can":[215],"be":[216],"effectively":[217],"discriminated":[218],"taking":[220],"any":[221,225],"or":[224],"combination":[226],"three-omics":[229],"input,":[232],"which":[233],"greatly":[234],"extends":[235],"make":[239],"efficient":[240],"use":[241],"profiles":[245],"apart":[246],"transcriptomics":[248],"model":[251],"available":[253],"https://github.com/CityUHKCompBio/MSCRCclassifier.":[255]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2026-01-30T00:00:00"}
