{"id":"https://openalex.org/W7126039697","doi":"https://doi.org/10.1109/bibm66473.2025.11356068","title":"An Approach to Identify Mechanism of Actions of Predicted Natural Antibiotics","display_name":"An Approach to Identify Mechanism of Actions of Predicted Natural Antibiotics","publication_year":2025,"publication_date":"2025-12-15","ids":{"openalex":"https://openalex.org/W7126039697","doi":"https://doi.org/10.1109/bibm66473.2025.11356068"},"language":null,"primary_location":{"id":"doi:10.1109/bibm66473.2025.11356068","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm66473.2025.11356068","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5107764824","display_name":"Muhammad Hendrick Sedayu","orcid":null},"institutions":[{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Muhammad Hendrick Sedayu","raw_affiliation_strings":["Graduate School of Science and Technology, Nara Institute of Science and Technology,Ikoma,Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Science and Technology, Nara Institute of Science and Technology,Ikoma,Japan","institution_ids":["https://openalex.org/I75917431"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050317884","display_name":"Ahmad Kamal Nasution","orcid":null},"institutions":[{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Ahmad Kamal Nasution","raw_affiliation_strings":["Graduate School of Science and Technology, Nara Institute of Science and Technology,Ikoma,Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Science and Technology, Nara Institute of Science and Technology,Ikoma,Japan","institution_ids":["https://openalex.org/I75917431"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Rumman Mahfujul Islam","orcid":null},"institutions":[{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Rumman Mahfujul Islam","raw_affiliation_strings":["Graduate School of Science and Technology, Nara Institute of Science and Technology,Ikoma,Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Science and Technology, Nara Institute of Science and Technology,Ikoma,Japan","institution_ids":["https://openalex.org/I75917431"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5122944048","display_name":"Naoaki Ono","orcid":null},"institutions":[{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Naoaki Ono","raw_affiliation_strings":["Graduate School of Science and Technology, Nara Institute of Science and Technology,Ikoma,Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Science and Technology, Nara Institute of Science and Technology,Ikoma,Japan","institution_ids":["https://openalex.org/I75917431"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5124295417","display_name":"Shigehiko Kanaya","orcid":null},"institutions":[{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shigehiko Kanaya","raw_affiliation_strings":["Graduate School of Science and Technology, Nara Institute of Science and Technology,Ikoma,Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Science and Technology, Nara Institute of Science and Technology,Ikoma,Japan","institution_ids":["https://openalex.org/I75917431"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5124284061","display_name":"Md. Altaf-Ul-Amin","orcid":null},"institutions":[{"id":"https://openalex.org/I75917431","display_name":"Nara Institute of Science and Technology","ror":"https://ror.org/05bhada84","country_code":"JP","type":"education","lineage":["https://openalex.org/I75917431"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Md. Altaf-Ul-Amin","raw_affiliation_strings":["Graduate School of Science and Technology, Nara Institute of Science and Technology,Ikoma,Japan"],"affiliations":[{"raw_affiliation_string":"Graduate School of Science and Technology, Nara Institute of Science and Technology,Ikoma,Japan","institution_ids":["https://openalex.org/I75917431"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5107764824"],"corresponding_institution_ids":["https://openalex.org/I75917431"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.74965577,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"4923","last_page":"4930"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9322999715805054,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9322999715805054,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.007699999958276749,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.007400000002235174,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/antibiotics","display_name":"Antibiotics","score":0.7324000000953674},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.6976000070571899},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5123000144958496},{"id":"https://openalex.org/keywords/natural","display_name":"Natural (archaeology)","score":0.4934000074863434},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.47029998898506165},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.3935000002384186}],"concepts":[{"id":"https://openalex.org/C501593827","wikidata":"https://www.wikidata.org/wiki/Q12187","display_name":"Antibiotics","level":2,"score":0.7324000000953674},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.6976000070571899},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5860999822616577},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5791000127792358},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5123000144958496},{"id":"https://openalex.org/C2776608160","wikidata":"https://www.wikidata.org/wiki/Q4785462","display_name":"Natural (archaeology)","level":2,"score":0.4934000074863434},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.47029998898506165},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.3935000002384186},{"id":"https://openalex.org/C94665300","wikidata":"https://www.wikidata.org/wiki/Q63391344","display_name":"Antibiotic resistance","level":3,"score":0.3603000044822693},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35190001130104065},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.34450000524520874},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33629998564720154},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.3361999988555908},{"id":"https://openalex.org/C2780791683","wikidata":"https://www.wikidata.org/wiki/Q846785","display_name":"Action (physics)","level":2,"score":0.3327000141143799},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33239999413490295},{"id":"https://openalex.org/C2776120743","wikidata":"https://www.wikidata.org/wiki/Q3271540","display_name":"Mechanism of action","level":3,"score":0.29760000109672546},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.29339998960494995},{"id":"https://openalex.org/C66024118","wikidata":"https://www.wikidata.org/wiki/Q1122506","display_name":"Computational model","level":2,"score":0.28940001130104065},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.26980000734329224}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm66473.2025.11356068","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm66473.2025.11356068","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2025 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.5167734622955322}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1485582261","https://openalex.org/W1990451437","https://openalex.org/W2128912763","https://openalex.org/W2148572632","https://openalex.org/W2151697120","https://openalex.org/W2345436405","https://openalex.org/W2887218823","https://openalex.org/W2901289248","https://openalex.org/W2999866742","https://openalex.org/W3147618726","https://openalex.org/W3160969793","https://openalex.org/W3202421543","https://openalex.org/W4283168270","https://openalex.org/W4294983467","https://openalex.org/W4311594451","https://openalex.org/W4362587709","https://openalex.org/W4384499957","https://openalex.org/W4390970607","https://openalex.org/W4403518877"],"related_works":[],"abstract_inverted_index":{"Antibiotic":[0],"resistance":[1],"is":[2],"a":[3,27,59],"mounting":[4],"global":[5],"health":[6],"challenge,":[7],"demanding":[8],"accelerated":[9],"strategies":[10],"for":[11,112,117],"discovering":[12],"new":[13],"drugs":[14],"and":[15,43,109,123],"understanding":[16],"their":[17],"mechanism":[18],"of":[19,34,49],"action":[20],"(MoA).":[21],"In":[22],"this":[23],"study,":[24],"we":[25,73],"propose":[26],"computational":[28],"framework":[29],"to":[30,57,99,121],"predict":[31],"the":[32,70],"MoA":[33],"natural":[35,65],"antibiotics":[36,51,66,90],"by":[37],"leveraging":[38],"Tanimoto":[39],"molecular":[40],"similarity":[41,60],"metrics":[42],"network-based":[44],"clustering.":[45],"A":[46],"curated":[47],"dataset":[48],"known":[50,82],"with":[52,81,94],"established":[53],"MoA's":[54],"was":[55],"used":[56],"generate":[58],"network,":[61],"into":[62],"which":[63],"predicted":[64,89],"were":[67],"integrated.":[68],"Using":[69],"DPClus":[71],"algorithm,":[72],"identified":[74],"structurally":[75],"coherent":[76],"clusters":[77,93],"that":[78,88],"frequently":[79],"aligned":[80],"functional":[83],"categories.":[84],"The":[85],"results":[86],"suggest":[87],"sharing":[91],"structural":[92],"characterized":[95],"compounds":[96],"are":[97],"likely":[98],"exhibit":[100],"similar":[101],"biological":[102],"activities.":[103],"Our":[104],"approach":[105],"provides":[106],"an":[107],"interpretable":[108],"scalable":[110],"method":[111],"prioritizing":[113],"novel":[114],"antibiotic":[115],"candidates":[116],"further":[118],"validation,":[119],"contributing":[120],"faster":[122],"more":[124],"informed":[125],"drug":[126],"discovery":[127],"pipelines.":[128]},"counts_by_year":[],"updated_date":"2026-04-16T08:26:57.006410","created_date":"2026-01-30T00:00:00"}
