{"id":"https://openalex.org/W4406261002","doi":"https://doi.org/10.1109/bibm62325.2024.10822865","title":"Protein Complex Identification Method based on Weighted Subgraph Clustering and Biocompatibility Evaluation","display_name":"Protein Complex Identification Method based on Weighted Subgraph Clustering and Biocompatibility Evaluation","publication_year":2024,"publication_date":"2024-12-03","ids":{"openalex":"https://openalex.org/W4406261002","doi":"https://doi.org/10.1109/bibm62325.2024.10822865"},"language":"en","primary_location":{"id":"doi:10.1109/bibm62325.2024.10822865","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822865","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074232429","display_name":"Tie Hua Zhou","orcid":"https://orcid.org/0000-0002-3258-0244"},"institutions":[{"id":"https://openalex.org/I179060312","display_name":"Northeast Electric Power University","ror":"https://ror.org/00zqaxa34","country_code":"CN","type":"education","lineage":["https://openalex.org/I179060312"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tie Hua Zhou","raw_affiliation_strings":["Northeast Electric Power University,School of Computer Science,Jilin,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Northeast Electric Power University,School of Computer Science,Jilin,China","institution_ids":["https://openalex.org/I179060312"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013624328","display_name":"Wanlin Zhang","orcid":"https://orcid.org/0009-0008-3771-7896"},"institutions":[{"id":"https://openalex.org/I179060312","display_name":"Northeast Electric Power University","ror":"https://ror.org/00zqaxa34","country_code":"CN","type":"education","lineage":["https://openalex.org/I179060312"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wanlin Zhang","raw_affiliation_strings":["Northeast Electric Power University,School of Computer Science,Jilin,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Northeast Electric Power University,School of Computer Science,Jilin,China","institution_ids":["https://openalex.org/I179060312"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100727331","display_name":"Ling Wang","orcid":"https://orcid.org/0000-0001-8956-0511"},"institutions":[{"id":"https://openalex.org/I179060312","display_name":"Northeast Electric Power University","ror":"https://ror.org/00zqaxa34","country_code":"CN","type":"education","lineage":["https://openalex.org/I179060312"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ling Wang","raw_affiliation_strings":["Northeast Electric Power University,School of Computer Science,Jilin,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Northeast Electric Power University,School of Computer Science,Jilin,China","institution_ids":["https://openalex.org/I179060312"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023862280","display_name":"Xiaoyan Xia","orcid":"https://orcid.org/0000-0002-8288-5679"},"institutions":[{"id":"https://openalex.org/I179060312","display_name":"Northeast Electric Power University","ror":"https://ror.org/00zqaxa34","country_code":"CN","type":"education","lineage":["https://openalex.org/I179060312"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoyan Xia","raw_affiliation_strings":["Northeast Electric Power University,School of Computer Science,Jilin,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Northeast Electric Power University,School of Computer Science,Jilin,China","institution_ids":["https://openalex.org/I179060312"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043932631","display_name":"Keun Ho Ryu","orcid":"https://orcid.org/0000-0003-0394-9054"},"institutions":[{"id":"https://openalex.org/I141445968","display_name":"Ton Duc Thang University","ror":"https://ror.org/01drq0835","country_code":"VN","type":"education","lineage":["https://openalex.org/I141445968"]}],"countries":["VN"],"is_corresponding":false,"raw_author_name":"Keun Ho Ryu","raw_affiliation_strings":["Ton Duc Thang University,Faculty of Information Technology,Ho Chi Minh City,Vietnam"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ton Duc Thang University,Faculty of Information Technology,Ho Chi Minh City,Vietnam","institution_ids":["https://openalex.org/I141445968"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.2041,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.58755489,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"5833","last_page":"5840"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9449999928474426,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9449999928474426,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7123650908470154},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6546217799186707},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6160451769828796},{"id":"https://openalex.org/keywords/biocompatibility","display_name":"Biocompatibility","score":0.41809701919555664},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3736323118209839},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36020612716674805},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.327725887298584},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1663966178894043},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10051682591438293}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7123650908470154},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6546217799186707},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6160451769828796},{"id":"https://openalex.org/C2777230088","wikidata":"https://www.wikidata.org/wiki/Q864426","display_name":"Biocompatibility","level":2,"score":0.41809701919555664},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3736323118209839},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36020612716674805},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.327725887298584},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1663966178894043},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10051682591438293},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C42360764","wikidata":"https://www.wikidata.org/wiki/Q83588","display_name":"Chemical engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm62325.2024.10822865","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822865","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","score":0.49000000953674316,"display_name":"Zero hunger"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W1138780706","https://openalex.org/W1986214964","https://openalex.org/W2050721857","https://openalex.org/W2057021995","https://openalex.org/W2107067224","https://openalex.org/W2113654464","https://openalex.org/W2116117181","https://openalex.org/W2132582966","https://openalex.org/W2136850043","https://openalex.org/W2154509769","https://openalex.org/W2161605580","https://openalex.org/W2163485494","https://openalex.org/W2910128431","https://openalex.org/W2912312581","https://openalex.org/W2931795699","https://openalex.org/W2949332308","https://openalex.org/W3130319044","https://openalex.org/W4206543052","https://openalex.org/W4206646274","https://openalex.org/W4213450471","https://openalex.org/W4243979784","https://openalex.org/W4311824634","https://openalex.org/W4323656629","https://openalex.org/W4365517193","https://openalex.org/W4385654864","https://openalex.org/W4400163008","https://openalex.org/W4400726535"],"related_works":["https://openalex.org/W2393655250","https://openalex.org/W2393417063","https://openalex.org/W2561756220","https://openalex.org/W2365560514","https://openalex.org/W2414282704","https://openalex.org/W1964194565","https://openalex.org/W2031574377","https://openalex.org/W2113455936","https://openalex.org/W2048078168","https://openalex.org/W2910105462"],"abstract_inverted_index":{"In":[0],"this":[1],"paper,":[2],"we":[3],"proposed":[4],"a":[5],"Weighted":[6],"Subgraph":[7],"Clustering":[8,26],"for":[9],"Protein":[10,37],"Complex":[11],"Identification":[12],"(WSC-PCI)":[13],"method":[14,46],",":[15],"which":[16,65,92],"combined":[17],"with":[18,101,118],"Gene":[19],"Ontology":[20],"(GO)":[21],"annotations":[22],"and":[23,62,72,96,123,125,128],"improved":[24],"Edge":[25],"Coefficient":[27],"(ECC)":[28],"to":[29,47,58,68,88,120],"indentify":[30],"the":[31,43,49,53,60,69,78,110,126,132],"protein":[32,74],"complex":[33],"over":[34],"weighted":[35,45],"Protein-":[36],"Interaction":[38],"(PPI)":[39],"network.":[40],"By":[41,99],"using":[42],"comprehensive":[44],"calculate":[48],"node":[50],"weights":[51],"within":[52],"PPI":[54],"network,":[55],"in":[56],"order":[57],"mine":[59],"valuable":[61],"core":[63],"subgraphs,":[64],"are":[66,135],"related":[67],"biologically":[70],"significant":[71],"real":[73,105],"complexes":[75],"based":[76],"on":[77,104],"core-attachment":[79],"structure":[80],"requirements.":[81],"And":[82],"then,":[83],"calculating":[84],"Biocompatibility":[85],"value":[86],"(BA-value)":[87],"identify":[89],"potential":[90],"proteins,":[91],"have":[93],"more":[94],"stable":[95],"good":[97],"biocompatibility.":[98],"comparing":[100],"multiple":[102],"algorithms":[103],"datasets":[106],"of":[107,131],"different":[108],"species,":[109],"results":[111,134],"show":[112],"that":[113],"WSC-PCI":[114],"outperforms":[115],"other":[116],"methods":[117],"regard":[119],"recall,":[121],"precision":[122],"MMR,":[124],"authenticity":[127],"biological":[129],"significance":[130],"identification":[133],"verified":[136],"by":[137],"p-value":[138],"analysis.":[139]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
