{"id":"https://openalex.org/W4406259900","doi":"https://doi.org/10.1109/bibm62325.2024.10822861","title":"Novel Truncated-rank Graph-structured and Tree-guided Sparse Linear Mixed Models for Variable Selection on Genome-wide Association Studies","display_name":"Novel Truncated-rank Graph-structured and Tree-guided Sparse Linear Mixed Models for Variable Selection on Genome-wide Association Studies","publication_year":2024,"publication_date":"2024-12-03","ids":{"openalex":"https://openalex.org/W4406259900","doi":"https://doi.org/10.1109/bibm62325.2024.10822861"},"language":"en","primary_location":{"id":"doi:10.1109/bibm62325.2024.10822861","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822861","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100408590","display_name":"Xiang Liu","orcid":"https://orcid.org/0000-0002-0274-6127"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I2801047068","display_name":"University Health System","ror":"https://ror.org/01d9cs377","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2801047068"]},{"id":"https://openalex.org/I4210150261","display_name":"National University Health System","ror":"https://ror.org/05tjjsh18","country_code":"SG","type":"education","lineage":["https://openalex.org/I4210150261"]}],"countries":["SG","US"],"is_corresponding":true,"raw_author_name":"Xiang Liu","raw_affiliation_strings":["National University Health System,Group Technology Office","National University of Singapore,School of Computing"],"affiliations":[{"raw_affiliation_string":"National University Health System,Group Technology Office","institution_ids":["https://openalex.org/I2801047068","https://openalex.org/I4210150261"]},{"raw_affiliation_string":"National University of Singapore,School of Computing","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051417114","display_name":"Xueling Liu","orcid":"https://orcid.org/0009-0007-4940-8903"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]},{"id":"https://openalex.org/I2801047068","display_name":"University Health System","ror":"https://ror.org/01d9cs377","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2801047068"]},{"id":"https://openalex.org/I4210150261","display_name":"National University Health System","ror":"https://ror.org/05tjjsh18","country_code":"SG","type":"education","lineage":["https://openalex.org/I4210150261"]}],"countries":["SG","US"],"is_corresponding":false,"raw_author_name":"Xueling Liu","raw_affiliation_strings":["National University Health System,Group Technology Office","National University of Singapore,School of Computing"],"affiliations":[{"raw_affiliation_string":"National University Health System,Group Technology Office","institution_ids":["https://openalex.org/I2801047068","https://openalex.org/I4210150261"]},{"raw_affiliation_string":"National University of Singapore,School of Computing","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5098302762","display_name":"Jing Diao","orcid":"https://orcid.org/0000-0002-2478-7659"},"institutions":[{"id":"https://openalex.org/I4210126592","display_name":"National Clinical Research","ror":"https://ror.org/03ddkvp86","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210126592"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jing Diao","raw_affiliation_strings":["Peking University School and Hospital of Stomatology National Center for Stomatology &#x0026; National Clinical Research Center for Oral Diseases,Department of Preventive Dentistry"],"affiliations":[{"raw_affiliation_string":"Peking University School and Hospital of Stomatology National Center for Stomatology &#x0026; National Clinical Research Center for Oral Diseases,Department of Preventive Dentistry","institution_ids":["https://openalex.org/I4210126592"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100567232","display_name":"Mengyao Zheng","orcid":"https://orcid.org/0000-0002-7244-524X"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mengyao Zheng","raw_affiliation_strings":["Harvard University,Harvard T.H. Chan School of Public Health"],"affiliations":[{"raw_affiliation_string":"Harvard University,Harvard T.H. Chan School of Public Health","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086781960","display_name":"J. Li","orcid":null},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jihe Li","raw_affiliation_strings":["Peking University,School of Software and Microelectronics"],"affiliations":[{"raw_affiliation_string":"Peking University,School of Software and Microelectronics","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022651461","display_name":"Yongyi Xie","orcid":null},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I4210131109","display_name":"Institute of Dermatology","ror":"https://ror.org/02j6cz137","country_code":"TH","type":"education","lineage":["https://openalex.org/I1315836254","https://openalex.org/I4210131109"]},{"id":"https://openalex.org/I4210156460","display_name":"Shanghai Skin Disease Hospital","ror":"https://ror.org/05v6r7450","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210156460"]}],"countries":["CN","TH"],"is_corresponding":false,"raw_author_name":"Yongyi Xie","raw_affiliation_strings":["Tongji University,Shanghai Skin Disease Hospital, Institute of Dermatology, School of Medicine"],"affiliations":[{"raw_affiliation_string":"Tongji University,Shanghai Skin Disease Hospital, Institute of Dermatology, School of Medicine","institution_ids":["https://openalex.org/I4210156460","https://openalex.org/I4210131109","https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021771381","display_name":"Lai Kang","orcid":"https://orcid.org/0000-0002-2620-3004"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Kang Lai","raw_affiliation_strings":["Nanyang Technological University,School of Mechanical &#x0026; Aerospace Engineering"],"affiliations":[{"raw_affiliation_string":"Nanyang Technological University,School of Mechanical &#x0026; Aerospace Engineering","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101744685","display_name":"Xiao Geng","orcid":"https://orcid.org/0000-0003-0502-6237"},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I4210141942","display_name":"Peking University Third Hospital","ror":"https://ror.org/04wwqze12","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210141942"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiao Geng","raw_affiliation_strings":["Peking University Third Hospital Engineering Research Center of Bone and Joint Precision Medicine, Ministry of Education,Orthopaedic Department"],"affiliations":[{"raw_affiliation_string":"Peking University Third Hospital Engineering Research Center of Bone and Joint Precision Medicine, Ministry of Education,Orthopaedic Department","institution_ids":["https://openalex.org/I20231570","https://openalex.org/I4210141942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020880385","display_name":"Yangqiu Song","orcid":"https://orcid.org/0000-0002-7818-6090"},"institutions":[{"id":"https://openalex.org/I90727586","display_name":"Zhejiang University of Finance and Economics","ror":"https://ror.org/055vj5234","country_code":"CN","type":"education","lineage":["https://openalex.org/I90727586"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yijun Song","raw_affiliation_strings":["Zhejiang University of Finance &#x0026; Economics,Dongfang College"],"affiliations":[{"raw_affiliation_string":"Zhejiang University of Finance &#x0026; Economics,Dongfang College","institution_ids":["https://openalex.org/I90727586"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048918787","display_name":"Linshan Jiang","orcid":"https://orcid.org/0000-0001-8501-9488"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Linshan Jiang","raw_affiliation_strings":["National University of Singapore,Institute of Data Science"],"affiliations":[{"raw_affiliation_string":"National University of Singapore,Institute of Data Science","institution_ids":["https://openalex.org/I165932596"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5100408590"],"corresponding_institution_ids":["https://openalex.org/I165932596","https://openalex.org/I2801047068","https://openalex.org/I4210150261"],"apc_list":null,"apc_paid":null,"fwci":1.169,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.83259114,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"5868","last_page":"5875"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.968999981880188,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.968999981880188,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9101999998092651,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5198681354522705},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.4924522340297699},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4776947796344757},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.47701191902160645},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.47594666481018066},{"id":"https://openalex.org/keywords/variable","display_name":"Variable (mathematics)","score":0.46391215920448303},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3400465250015259},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3365335166454315},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3235222399234772},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.32003217935562134},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2620333135128021},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.23144862055778503},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.182047039270401}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5198681354522705},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.4924522340297699},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4776947796344757},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.47701191902160645},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.47594666481018066},{"id":"https://openalex.org/C182365436","wikidata":"https://www.wikidata.org/wiki/Q50701","display_name":"Variable (mathematics)","level":2,"score":0.46391215920448303},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3400465250015259},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3365335166454315},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3235222399234772},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.32003217935562134},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2620333135128021},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.23144862055778503},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.182047039270401},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm62325.2024.10822861","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822861","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.4300000071525574}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":66,"referenced_works":["https://openalex.org/W92008980","https://openalex.org/W1502873436","https://openalex.org/W1605885548","https://openalex.org/W1786785735","https://openalex.org/W1965125844","https://openalex.org/W1966775465","https://openalex.org/W1980092349","https://openalex.org/W1985985262","https://openalex.org/W1989060270","https://openalex.org/W1993284865","https://openalex.org/W2008933956","https://openalex.org/W2015821928","https://openalex.org/W2031854514","https://openalex.org/W2033105784","https://openalex.org/W2033322043","https://openalex.org/W2059554529","https://openalex.org/W2074682976","https://openalex.org/W2086021638","https://openalex.org/W2088486634","https://openalex.org/W2100736790","https://openalex.org/W2108169091","https://openalex.org/W2123992386","https://openalex.org/W2130542470","https://openalex.org/W2135046866","https://openalex.org/W2137797806","https://openalex.org/W2146374090","https://openalex.org/W2148870018","https://openalex.org/W2157752701","https://openalex.org/W2162683818","https://openalex.org/W2187558068","https://openalex.org/W2202191676","https://openalex.org/W2549139405","https://openalex.org/W2770857674","https://openalex.org/W2889270078","https://openalex.org/W2950342496","https://openalex.org/W2951859899","https://openalex.org/W2952201793","https://openalex.org/W2987364071","https://openalex.org/W2990689160","https://openalex.org/W2997786719","https://openalex.org/W3005448502","https://openalex.org/W3049771035","https://openalex.org/W3082155869","https://openalex.org/W3098306969","https://openalex.org/W3100910045","https://openalex.org/W3101782091","https://openalex.org/W3102205410","https://openalex.org/W3103144163","https://openalex.org/W3192162730","https://openalex.org/W3210382439","https://openalex.org/W3213105510","https://openalex.org/W4200351727","https://openalex.org/W4213229622","https://openalex.org/W4235618730","https://openalex.org/W4285140598","https://openalex.org/W4318391569","https://openalex.org/W4322496313","https://openalex.org/W4368360218","https://openalex.org/W4384030795","https://openalex.org/W4394641052","https://openalex.org/W6687102828","https://openalex.org/W6746180991","https://openalex.org/W6840718281","https://openalex.org/W6850109518","https://openalex.org/W6863452158","https://openalex.org/W7058612233"],"related_works":["https://openalex.org/W2112835755","https://openalex.org/W4205762803","https://openalex.org/W4291951920","https://openalex.org/W2349674371","https://openalex.org/W2097495471","https://openalex.org/W2535856026","https://openalex.org/W1696545756","https://openalex.org/W2265065644","https://openalex.org/W2952827811","https://openalex.org/W2056202066"],"abstract_inverted_index":{"Variable":[0],"selection":[1,103],"for":[2,10,63,94,129,160],"genome-wide":[3,76],"association":[4,77],"studies":[5],"is":[6],"a":[7,110],"key":[8],"focus":[9],"bioinformatics":[11],"researchers":[12],"in":[13,41,46,67,109],"high-performance":[14],"computing.":[15],"The":[16],"rapid":[17],"growth":[18],"of":[19,75,145],"biological":[20],"and":[21,35,70,84,91,123,136,143,157],"biomedical":[22],"data":[23,69],"demands":[24],"has":[25],"led":[26],"to":[27,58,120,155],"high-dimensional,":[28],"heterogeneous":[29,68],"datasets":[30,122,139],"characterized":[31],"by":[32],"non-i.i.d.":[33],"properties":[34],"numerous":[36],"response":[37,90],"variables,":[38],"often":[39],"resulting":[40],"false":[42],"negatives":[43],"or":[44,106],"positives":[45],"recovered":[47],"results.":[48],"Traditional":[49],"methods,":[50,82,148],"when":[51],"nal\u0308ively":[52],"applied,":[53],"yield":[54],"suboptimal":[55],"performance":[56],"due":[57],"confounding":[59],"factors.":[60],"To":[61],"account":[62],"the":[64,72,126,141,150],"complex":[65],"interdependencies":[66],"enhance":[71],"practical":[73],"outcomes":[74],"studies,":[78],"we":[79,116],"introduce":[80],"two":[81],"TGsLMM":[83],"TTsLMM,":[85],"which":[86],"balance":[87],"effects":[88],"between":[89],"explanatory":[92],"variables":[93],"subpopulation":[95],"inference.":[96],"Our":[97],"unified":[98],"framework":[99],"performs":[100],"sparse":[101],"variable":[102],"using":[104],"graph-structured":[105],"tree-guided":[107],"structures":[108],"low-rank":[111],"linear":[112],"mixed":[113],"model.":[114],"Additionally,":[115],"extend":[117],"our":[118,146],"approach":[119],"high-dimensional":[121],"adaptively":[124],"select":[125],"covariance":[127],"structure":[128],"genomic":[130],"data.":[131],"Extensive":[132],"experiments":[133],"on":[134],"synthetic":[135],"three":[137],"real-world":[138],"emphasize":[140],"robustness":[142],"effectiveness":[144],"proposed":[147],"achieving":[149],"highest":[151],"ROC":[152],"area":[153],"compared":[154],"baselines":[156],"superior":[158],"results":[159],"future":[161],"potential.":[162]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
