{"id":"https://openalex.org/W4406260096","doi":"https://doi.org/10.1109/bibm62325.2024.10822697","title":"LSNSCDA: Unraveling CircRNA\u2013Drug Sensitivity via Local Smoothing Graph Neural Network and Credible Negative Samples","display_name":"LSNSCDA: Unraveling CircRNA\u2013Drug Sensitivity via Local Smoothing Graph Neural Network and Credible Negative Samples","publication_year":2024,"publication_date":"2024-12-03","ids":{"openalex":"https://openalex.org/W4406260096","doi":"https://doi.org/10.1109/bibm62325.2024.10822697"},"language":"en","primary_location":{"id":"doi:10.1109/bibm62325.2024.10822697","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822697","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056400750","display_name":"Ziyu Fan","orcid":"https://orcid.org/0009-0003-1962-8092"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ziyu Fan","raw_affiliation_strings":["Central South University,School of Computer Science and Engineering,Changsha,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central South University,School of Computer Science and Engineering,Changsha,China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052229178","display_name":"Yuanpeng Zhang","orcid":"https://orcid.org/0000-0003-1736-3425"},"institutions":[{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuanpeng Zhang","raw_affiliation_strings":["Xinjiang University,School of Software,Wulumuqi,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Xinjiang University,School of Software,Wulumuqi,China","institution_ids":["https://openalex.org/I96908189"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113409309","display_name":"Y. S. Li","orcid":"https://orcid.org/0009-0003-6542-2239"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yahan Li","raw_affiliation_strings":["Central South University,School of Computer Science and Engineering,Changsha,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central South University,School of Computer Science and Engineering,Changsha,China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086292274","display_name":"Zeyu Zhong","orcid":"https://orcid.org/0009-0005-9967-4244"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zeyu Zhong","raw_affiliation_strings":["Central South University,School of Computer Science and Engineering,Changsha,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central South University,School of Computer Science and Engineering,Changsha,China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113262237","display_name":"Lei Deng","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Deng","raw_affiliation_strings":["Central South University,School of Computer Science and Engineering,Changsha,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central South University,School of Computer Science and Engineering,Changsha,China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"288","last_page":"293"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9373999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9373999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12647","display_name":"Traditional Chinese Medicine Studies","score":0.9129999876022339,"subfield":{"id":"https://openalex.org/subfields/2707","display_name":"Complementary and alternative medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sensitivity","display_name":"Sensitivity (control systems)","score":0.7604043483734131},{"id":"https://openalex.org/keywords/smoothing","display_name":"Smoothing","score":0.7003192901611328},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5551705360412598},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.4740152955055237},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4453771114349365},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.4104347825050354},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3720635175704956},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.2847245931625366},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.16029980778694153},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.13313376903533936},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.0793013870716095},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.06682631373405457}],"concepts":[{"id":"https://openalex.org/C21200559","wikidata":"https://www.wikidata.org/wiki/Q7451068","display_name":"Sensitivity (control systems)","level":2,"score":0.7604043483734131},{"id":"https://openalex.org/C3770464","wikidata":"https://www.wikidata.org/wiki/Q775963","display_name":"Smoothing","level":2,"score":0.7003192901611328},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5551705360412598},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.4740152955055237},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4453771114349365},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.4104347825050354},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3720635175704956},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2847245931625366},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.16029980778694153},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.13313376903533936},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0793013870716095},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.06682631373405457},{"id":"https://openalex.org/C24326235","wikidata":"https://www.wikidata.org/wiki/Q126095","display_name":"Electronic engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm62325.2024.10822697","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822697","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W2108068107","https://openalex.org/W2148145769","https://openalex.org/W2163169932","https://openalex.org/W2757784215","https://openalex.org/W2899436082","https://openalex.org/W2916534270","https://openalex.org/W2948041524","https://openalex.org/W2969715183","https://openalex.org/W2998496395","https://openalex.org/W3000082418","https://openalex.org/W3037489518","https://openalex.org/W3042770487","https://openalex.org/W3048858802","https://openalex.org/W3109958717","https://openalex.org/W3170286690","https://openalex.org/W3173033046","https://openalex.org/W3197001103","https://openalex.org/W4205736070","https://openalex.org/W4229005146","https://openalex.org/W4313707003","https://openalex.org/W4388636800","https://openalex.org/W4389495145","https://openalex.org/W4389921927","https://openalex.org/W4398145086","https://openalex.org/W6760001035","https://openalex.org/W6784856447","https://openalex.org/W6789174757","https://openalex.org/W6802801727"],"related_works":["https://openalex.org/W1978572805","https://openalex.org/W2383807498","https://openalex.org/W1997992934","https://openalex.org/W1987225439","https://openalex.org/W4238188170","https://openalex.org/W2125114371","https://openalex.org/W2019977573","https://openalex.org/W2149980199","https://openalex.org/W3125766170","https://openalex.org/W4226363941"],"abstract_inverted_index":{"This":[0],"study":[1],"investigates":[2],"the":[3,59,69,97],"role":[4],"of":[5,61,71,99,102],"circular":[6],"RNAs":[7],"(circRNAs)":[8],"in":[9,64],"drug":[10],"sensitivity,":[11],"with":[12],"a":[13,35],"focus":[14],"on":[15],"their":[16],"potential":[17],"to":[18,52],"inform":[19],"personalized":[20],"medicine.":[21],"While":[22],"current":[23],"methods":[24],"for":[25],"identifying":[26],"circRNA-drug":[27],"sensitivity":[28],"associations":[29],"are":[30,118],"resource-intensive,":[31],"we":[32],"propose":[33],"LSNSCDA,":[34],"novel":[36],"prediction":[37,54],"algorithm":[38],"that":[39,79],"integrates":[40],"Local":[41],"Smoothing":[42],"Graph":[43],"Neural":[44],"Networks":[45],"(LS-GNN)":[46],"and":[47,68,88,116],"Credible":[48],"Negative":[49],"Sampling":[50],"(CNS)":[51],"improve":[53],"accuracy.":[55],"Our":[56],"approach":[57],"overcomes":[58],"challenges":[60],"fixed-length":[62],"propagation":[63],"graph":[65],"neural":[66],"networks":[67],"unreliability":[70],"randomly":[72],"sampled":[73],"negative":[74],"instances.":[75],"Experimental":[76],"results":[77],"show":[78],"LSNSCDA":[80],"outperforms":[81],"existing":[82],"models,":[83],"providing":[84],"more":[85],"reliable":[86],"predictions":[87],"valuable":[89],"insights":[90],"into":[91],"cancer":[92],"treatment.":[93],"Extensive":[94],"evaluation":[95],"confirms":[96],"effectiveness":[98],"each":[100],"component":[101],"our":[103],"model,":[104],"while":[105],"case":[106],"studies":[107],"further":[108],"demonstrate":[109],"its":[110],"practical":[111],"applicability.":[112],"The":[113],"source":[114],"code":[115],"dataset":[117],"available":[119],"at":[120],"https://github.com/ZiyuFanCSU/LSNSCDA.":[121]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
