{"id":"https://openalex.org/W4406260724","doi":"https://doi.org/10.1109/bibm62325.2024.10822696","title":"MFN: Explainable DNA triple helixes Stabilized Design based on mCGR and flow network","display_name":"MFN: Explainable DNA triple helixes Stabilized Design based on mCGR and flow network","publication_year":2024,"publication_date":"2024-12-03","ids":{"openalex":"https://openalex.org/W4406260724","doi":"https://doi.org/10.1109/bibm62325.2024.10822696"},"language":"en","primary_location":{"id":"doi:10.1109/bibm62325.2024.10822696","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822696","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Xiaoru Wen","orcid":null},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaoru Wen","raw_affiliation_strings":["Dalian University,Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering,Dalian,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University,Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering,Dalian,China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103145558","display_name":"Lijun Sun","orcid":"https://orcid.org/0000-0002-3081-4385"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lijun Sun","raw_affiliation_strings":["Dalian University of Technology,School of Computer Science and Technology,Dalian,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,School of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102276357","display_name":"Lei Xie","orcid":"https://orcid.org/0009-0000-5571-6282"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Xie","raw_affiliation_strings":["Dalian University,Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering,Dalian,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University,Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering,Dalian,China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084679597","display_name":"Yanfen Zheng","orcid":"https://orcid.org/0000-0002-0467-7487"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanfen Zheng","raw_affiliation_strings":["Dalian University of Technology,School of Computer Science and Technology,Dalian,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,School of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063023342","display_name":"Ben Cao","orcid":"https://orcid.org/0000-0003-1503-6009"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ben Cao","raw_affiliation_strings":["Dalian University of Technology,School of Computer Science and Technology,Dalian,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,School of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100675725","display_name":"Bin Wang","orcid":"https://orcid.org/0000-0002-9308-4228"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bin Wang","raw_affiliation_strings":["Dalian University,Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering,Dalian,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University,Key Laboratory of Advanced Design and Intelligent Computing, Ministry of Education, School of Software Engineering,Dalian,China","institution_ids":["https://openalex.org/I27357992"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I27357992"],"apc_list":null,"apc_paid":null,"fwci":0.199,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.58471784,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"248","last_page":"253"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/flow","display_name":"Flow (mathematics)","score":0.5330758094787598},{"id":"https://openalex.org/keywords/triple-helix","display_name":"Triple helix","score":0.5009138584136963},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4613504409790039},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.4123004376888275},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.31063127517700195},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.20548591017723083},{"id":"https://openalex.org/keywords/stereochemistry","display_name":"Stereochemistry","score":0.1239168643951416},{"id":"https://openalex.org/keywords/mechanics","display_name":"Mechanics","score":0.09377443790435791}],"concepts":[{"id":"https://openalex.org/C38349280","wikidata":"https://www.wikidata.org/wiki/Q1434290","display_name":"Flow (mathematics)","level":2,"score":0.5330758094787598},{"id":"https://openalex.org/C10919887","wikidata":"https://www.wikidata.org/wiki/Q7843514","display_name":"Triple helix","level":2,"score":0.5009138584136963},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4613504409790039},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.4123004376888275},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.31063127517700195},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.20548591017723083},{"id":"https://openalex.org/C71240020","wikidata":"https://www.wikidata.org/wiki/Q186011","display_name":"Stereochemistry","level":1,"score":0.1239168643951416},{"id":"https://openalex.org/C57879066","wikidata":"https://www.wikidata.org/wiki/Q41217","display_name":"Mechanics","level":1,"score":0.09377443790435791},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm62325.2024.10822696","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822696","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323086","display_name":"Natural Science Foundation of Liaoning Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1552561242","https://openalex.org/W1605738254","https://openalex.org/W1968421165","https://openalex.org/W1974378765","https://openalex.org/W1984388559","https://openalex.org/W1997420824","https://openalex.org/W2021397048","https://openalex.org/W2070913478","https://openalex.org/W2106858736","https://openalex.org/W2609836588","https://openalex.org/W3004943413","https://openalex.org/W3126872424","https://openalex.org/W3154396586","https://openalex.org/W3199373234","https://openalex.org/W4206362576","https://openalex.org/W4293211553","https://openalex.org/W4306841621","https://openalex.org/W4313528998","https://openalex.org/W4328089024","https://openalex.org/W4380421656","https://openalex.org/W4385719668"],"related_works":["https://openalex.org/W4387497383","https://openalex.org/W2948807893","https://openalex.org/W2899084033","https://openalex.org/W2778153218","https://openalex.org/W2748952813","https://openalex.org/W1531601525","https://openalex.org/W4391375266","https://openalex.org/W2078814861","https://openalex.org/W2527526854","https://openalex.org/W1976181487"],"abstract_inverted_index":{"DNA":[0,21,46,66,83,151],"triple":[1,47,125,152],"helix":[2,126],"structure,":[3],"as":[4,95],"a":[5,80,156],"highly":[6],"specific":[7],"gene":[8,12,36,161],"targeting":[9],"tool,":[10],"enable":[11],"regulation":[13],"by":[14,103],"precisely":[15],"identifying":[16],"and":[17,29,58,106,112,128,147,154],"binding":[18],"to":[19,74,87,99],"target":[20],"sequences.":[22],"However,":[23],"the":[24,62,71,107,121,136,139],"limits":[25],"of":[26,65,82,124,138,150],"design":[27,49,122,149],"quality":[28],"efficiency":[30,123],"affect":[31],"their":[32],"wide":[33],"application":[34],"in":[35,39],"therapy.":[37,162],"Therefore,":[38],"this":[40,68],"paper,":[41],"we":[42],"propose":[43],"an":[44,76,145],"antiparallel":[45],"helixes":[48,153],"method-MFN":[50],"based":[51],"on":[52],"matrix":[53],"chaotic":[54],"game":[55],"representation":[56],"(mCGR)":[57],"flow":[59],"network.":[60],"Leveraging":[61],"structural":[63],"characteristics":[64],"sequences,":[67],"method":[69],"employs":[70],"mCGR":[72],"algorithm":[73],"construct":[75],"initial":[77],"matrix,":[78],"generating":[79],"set":[81],"sequences":[84,92],"that":[85,117],"conform":[86],"foundational":[88],"constraints.":[89],"Then,":[90],"these":[91],"are":[93],"mapped":[94],"stream":[96],"network":[97],"nodes":[98],"screen":[100],"crosstalk":[101,130],"structures":[102],"path":[104],"search,":[105],"whole":[108],"process":[109],"is":[110],"observable":[111],"interpretable.":[113],"Experimental":[114],"results":[115],"show":[116],"MFN":[118,143],"significantly":[119],"improves":[120],"structure":[127],"reduces":[129],"phenomenon.":[131],"Wet":[132],"experiments":[133],"further":[134],"verify":[135],"effectiveness":[137],"method.":[140],"In":[141],"summary,":[142],"achieves":[144],"efficient":[146],"high-quality":[148],"provides":[155],"new":[157],"idea":[158],"for":[159],"targeted":[160]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
