{"id":"https://openalex.org/W4406271182","doi":"https://doi.org/10.1109/bibm62325.2024.10822688","title":"Extracting Structure Information from Narrative Medical Reports based on LLMs","display_name":"Extracting Structure Information from Narrative Medical Reports based on LLMs","publication_year":2024,"publication_date":"2024-12-03","ids":{"openalex":"https://openalex.org/W4406271182","doi":"https://doi.org/10.1109/bibm62325.2024.10822688"},"language":"en","primary_location":{"id":"doi:10.1109/bibm62325.2024.10822688","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822688","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5114672877","display_name":"Dehua Chen","orcid":"https://orcid.org/0000-0002-1779-8026"},"institutions":[{"id":"https://openalex.org/I181326427","display_name":"Donghua University","ror":"https://ror.org/035psfh38","country_code":"CN","type":"education","lineage":["https://openalex.org/I181326427"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Dehua Chen","raw_affiliation_strings":["Donghua University,Computer Science and Technology,Shanghai,China"],"affiliations":[{"raw_affiliation_string":"Donghua University,Computer Science and Technology,Shanghai,China","institution_ids":["https://openalex.org/I181326427"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Zijian Shen","orcid":null},"institutions":[{"id":"https://openalex.org/I181326427","display_name":"Donghua University","ror":"https://ror.org/035psfh38","country_code":"CN","type":"education","lineage":["https://openalex.org/I181326427"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zijian Shen","raw_affiliation_strings":["Donghua University,Computer Science and Technology,Shanghai,China"],"affiliations":[{"raw_affiliation_string":"Donghua University,Computer Science and Technology,Shanghai,China","institution_ids":["https://openalex.org/I181326427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100375197","display_name":"Mei Wang","orcid":"https://orcid.org/0000-0002-2771-3970"},"institutions":[{"id":"https://openalex.org/I181326427","display_name":"Donghua University","ror":"https://ror.org/035psfh38","country_code":"CN","type":"education","lineage":["https://openalex.org/I181326427"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mei Wang","raw_affiliation_strings":["Donghua University,Computer Science and Technology,Shanghai,China"],"affiliations":[{"raw_affiliation_string":"Donghua University,Computer Science and Technology,Shanghai,China","institution_ids":["https://openalex.org/I181326427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079041987","display_name":"Na Dong","orcid":"https://orcid.org/0000-0001-5476-7520"},"institutions":[{"id":"https://openalex.org/I181326427","display_name":"Donghua University","ror":"https://ror.org/035psfh38","country_code":"CN","type":"education","lineage":["https://openalex.org/I181326427"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Na Dong","raw_affiliation_strings":["Donghua University,Computer Science and Technology,Shanghai,China"],"affiliations":[{"raw_affiliation_string":"Donghua University,Computer Science and Technology,Shanghai,China","institution_ids":["https://openalex.org/I181326427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108681526","display_name":"Qiao Pan","orcid":"https://orcid.org/0009-0004-1797-8643"},"institutions":[{"id":"https://openalex.org/I181326427","display_name":"Donghua University","ror":"https://ror.org/035psfh38","country_code":"CN","type":"education","lineage":["https://openalex.org/I181326427"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qiao Pan","raw_affiliation_strings":["Donghua University,Computer Science and Technology,Shanghai,China"],"affiliations":[{"raw_affiliation_string":"Donghua University,Computer Science and Technology,Shanghai,China","institution_ids":["https://openalex.org/I181326427"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069491635","display_name":"Jianwen Su","orcid":"https://orcid.org/0000-0002-4637-1339"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jianwen Su","raw_affiliation_strings":["University of California, Santa Barbara,Computer Science,CA,USA"],"affiliations":[{"raw_affiliation_string":"University of California, Santa Barbara,Computer Science,CA,USA","institution_ids":["https://openalex.org/I154570441"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5114672877"],"corresponding_institution_ids":["https://openalex.org/I181326427"],"apc_list":null,"apc_paid":null,"fwci":0.6729,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.71240098,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"5616","last_page":"5623"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9567999839782715,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9567999839782715,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9391999840736389,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/narrative","display_name":"Narrative","score":0.6977100968360901},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5382717847824097},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4434351921081543},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4392596483230591},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.16202038526535034}],"concepts":[{"id":"https://openalex.org/C199033989","wikidata":"https://www.wikidata.org/wiki/Q1318295","display_name":"Narrative","level":2,"score":0.6977100968360901},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5382717847824097},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4434351921081543},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4392596483230591},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.16202038526535034},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm62325.2024.10822688","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822688","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Gender equality","id":"https://metadata.un.org/sdg/5","score":0.4099999964237213}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W2105482032","https://openalex.org/W2250342921","https://openalex.org/W4221166835","https://openalex.org/W4385245566","https://openalex.org/W4385571184","https://openalex.org/W4385572797","https://openalex.org/W4389523710","https://openalex.org/W4392619039","https://openalex.org/W6796581206","https://openalex.org/W6855198122","https://openalex.org/W6857076593"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2348886128","https://openalex.org/W2388067091","https://openalex.org/W2367656648","https://openalex.org/W2390279801","https://openalex.org/W2350200549","https://openalex.org/W2362132076","https://openalex.org/W2965396777"],"abstract_inverted_index":{"Extracting":[0],"structured":[1],"information":[2,58,185],"and":[3,18,32,87,100,115,140,187],"key":[4],"details":[5],"from":[6,59],"medical":[7,60],"report":[8,61,98,164],"narratives":[9],"is":[10],"crucial":[11],"to":[12,43,55,72,80,146,152],"support":[13],"healthcare":[14],"data":[15,103],"management,":[16],"analysis":[17],"decision-making.":[19],"However,":[20],"the":[21,25,27,30,33,38,44,64,69,73,89,92,117,123,129,154,181,188],"specialized":[22,82],"nature":[23],"of":[24,29,37,94,183],"reports,":[26],"complexity":[28],"contents,":[31],"high":[34,171],"accuracy":[35,172,182,191],"requirements":[36],"results":[39],"pose":[40],"significant":[41],"challenges":[42],"structuring":[45,65],"task.":[46],"In":[47],"this":[48,95],"paper,":[49],"we":[50,76,136],"develop":[51,81],"an":[52],"LLM-based":[53],"method":[54,145,169],"extract":[56],"structure":[57],"narratives.":[62],"Defining":[63],"problem":[66],"as":[67],"mapping":[68],"narrative":[70],"reports":[71,110],"domain":[74],"ontology,":[75],"design":[77],"a":[78,142,160,174],"framework":[79,96],"LLMs":[83,118,125,139],"that":[84,167],"automatically":[85],"learn":[86],"establish":[88],"mappings.":[90],"At":[91],"core":[93],"are":[97],"partitioning":[99],"interactive":[101],"training":[102,116,176],"generation":[104],"modules":[105],"are.":[106],"By":[107],"separating":[108],"complete":[109],"into":[111],"logically":[112],"independent":[113],"segments":[114,121],"on":[119,159],"these":[120],"independently,":[122],"trained":[124],"can":[126],"accurately":[127],"capture":[128],"semantic":[130],"relationships":[131],"within":[132],"each":[133],"segment.":[134],"Additionally,":[135],"explore":[137],"different":[138],"formulate":[141],"simplistic":[143],"scoring":[144],"compare":[147],"their":[148],"accuracy,":[149],"enabling":[150],"us":[151],"select":[153],"best-performing":[155],"model.":[156],"Experimental":[157],"evaluation":[158],"real-world":[161],"breast":[162],"ultrasound":[163],"dataset":[165,177],"demonstrates":[166],"our":[168],"achieves":[170],"with":[173],"small":[175],"(400":[178],"samples).":[179],"Specifically,":[180],"structural":[184],"extraction":[186],"attribute-value":[189],"matching":[190],"both":[192],"exceed":[193],"96%.":[194]},"counts_by_year":[{"year":2025,"cited_by_count":3}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
