{"id":"https://openalex.org/W4406261849","doi":"https://doi.org/10.1109/bibm62325.2024.10822677","title":"Multiple Optimization with Retrieval-Augmented Generation and Fine-Grained Denoising for Biomedical Event Causal Relation Extraction","display_name":"Multiple Optimization with Retrieval-Augmented Generation and Fine-Grained Denoising for Biomedical Event Causal Relation Extraction","publication_year":2024,"publication_date":"2024-12-03","ids":{"openalex":"https://openalex.org/W4406261849","doi":"https://doi.org/10.1109/bibm62325.2024.10822677"},"language":"en","primary_location":{"id":"doi:10.1109/bibm62325.2024.10822677","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822677","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5083390005","display_name":"Jie Zhao","orcid":"https://orcid.org/0000-0002-3924-5537"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Zhao","raw_affiliation_strings":["Dalian University of Technology,School of Computer Science and Technology,Dalian,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,School of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082868235","display_name":"Lishuang Li","orcid":"https://orcid.org/0000-0002-4189-1466"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lishuang Li","raw_affiliation_strings":["Dalian University of Technology,School of Computer Science and Technology,Dalian,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,School of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101076457","display_name":"Wanting Ning","orcid":null},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wanting Ning","raw_affiliation_strings":["Dalian University of Technology,School of Computer Science and Technology,Dalian,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,School of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109675048","display_name":"Jing Hao","orcid":null},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jing Hao","raw_affiliation_strings":["Dalian University of Technology,School of Computer Science and Technology,Dalian,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,School of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004394691","display_name":"Yuxiao Fei","orcid":"https://orcid.org/0000-0003-3891-250X"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuxiao Fei","raw_affiliation_strings":["Dalian University of Technology,School of Computer Science and Technology,Dalian,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,School of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040392661","display_name":"Jiayi Huang","orcid":"https://orcid.org/0000-0003-4011-6668"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiayi Huang","raw_affiliation_strings":["Dalian University of Technology,School of Computer Science and Technology,Dalian,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,School of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I27357992"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"4040","last_page":"4043"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.6593000292778015,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.6593000292778015,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11512","display_name":"Anomaly Detection Techniques and Applications","score":0.6427000164985657,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10876","display_name":"Fault Detection and Control Systems","score":0.6373999714851379,"subfield":{"id":"https://openalex.org/subfields/2207","display_name":"Control and Systems Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6677860617637634},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.5545034408569336},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.5361414551734924},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.5021374225616455},{"id":"https://openalex.org/keywords/noise-reduction","display_name":"Noise reduction","score":0.4954782724380493},{"id":"https://openalex.org/keywords/extraction","display_name":"Extraction (chemistry)","score":0.45867711305618286},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4199952483177185},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2896653711795807},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.0718618631362915},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.06581178307533264}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6677860617637634},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.5545034408569336},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.5361414551734924},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.5021374225616455},{"id":"https://openalex.org/C163294075","wikidata":"https://www.wikidata.org/wiki/Q581861","display_name":"Noise reduction","level":2,"score":0.4954782724380493},{"id":"https://openalex.org/C4725764","wikidata":"https://www.wikidata.org/wiki/Q844704","display_name":"Extraction (chemistry)","level":2,"score":0.45867711305618286},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4199952483177185},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2896653711795807},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0718618631362915},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.06581178307533264},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm62325.2024.10822677","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822677","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W2076581021","https://openalex.org/W2963063408","https://openalex.org/W3165832785","https://openalex.org/W4285253024","https://openalex.org/W4385320347","https://openalex.org/W4388409299","https://openalex.org/W4390970771","https://openalex.org/W4402670290"],"related_works":["https://openalex.org/W2976808399","https://openalex.org/W2609844752","https://openalex.org/W4392969631","https://openalex.org/W4285246823","https://openalex.org/W4226278302","https://openalex.org/W4221160509","https://openalex.org/W2547211086","https://openalex.org/W2538200646","https://openalex.org/W1968988659","https://openalex.org/W2888033806"],"abstract_inverted_index":{"Biomedical":[0],"Event":[1],"Causal":[2],"Relation":[3],"Extraction":[4],"(BECRE)":[5],"aims":[6],"to":[7,46,104],"identify":[8],"event":[9],"causal":[10],"relations":[11],"in":[12,110],"biomedical":[13],"literature.":[14],"Current":[15],"methods":[16,129],"emphasize":[17],"sample":[18,52],"data":[19,23,32,42,76,98],"optimization.":[20],"First,":[21],"although":[22],"augmentation":[24],"tackles":[25],"the":[26,34,59],"low-resource":[27],"issue,":[28],"it":[29],"only":[30],"augments":[31,75],"from":[33,77],"lexical":[35],"level.":[36],"Second,":[37],"integrating":[38],"external":[39,92],"knowledge":[40],"enriches":[41],"diversity,":[43],"yet":[44],"fails":[45],"select":[47],"targeted":[48,89],"knowledge.":[49,93],"Third,":[50],"fine-grained":[51,97],"denoising":[53,99],"is":[54],"often":[55],"overlooked.":[56],"To":[57],"resolve":[58],"aforementioned":[60],"issues,":[61],"we":[62,95],"introduce":[63],"Multiple":[64],"Optimization":[65],"with":[66],"Retrieval-Augmented":[67,83],"Generation":[68,84],"and":[69,88,133],"Fine-Grained":[70],"Denoising":[71],"(MoRAG-FD)":[72],"framework.":[73],"It":[74],"multiple":[78],"perspectives,":[79],"which":[80],"mainly":[81],"include":[82],"for":[85],"semantic":[86],"enrichment":[87],"selection":[90],"of":[91],"Additionally,":[94],"accomplish":[96],"by":[100],"assigning":[101],"near-zero":[102],"weights":[103],"entity":[105],"pairs":[106],"without":[107],"syntactic":[108],"dependencies":[109],"events,":[111],"rather":[112],"than":[113],"simply":[114],"filtering":[115],"them":[116],"based":[117],"on":[118,130],"word":[119],"index":[120],"distance.":[121],"Experimental":[122],"results":[123],"show":[124],"our":[125],"framework":[126],"outperforms":[127],"current":[128],"Hahn-Powell\u2019s":[131],"dataset":[132],"BioCause":[134],"dataset.":[135]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
