{"id":"https://openalex.org/W4406261422","doi":"https://doi.org/10.1109/bibm62325.2024.10822644","title":"Sequencing Efforts and Epidemiological Trends: Analyzing SARS-CoV-2 Dynamics Across European Nations","display_name":"Sequencing Efforts and Epidemiological Trends: Analyzing SARS-CoV-2 Dynamics Across European Nations","publication_year":2024,"publication_date":"2024-12-03","ids":{"openalex":"https://openalex.org/W4406261422","doi":"https://doi.org/10.1109/bibm62325.2024.10822644"},"language":"en","primary_location":{"id":"doi:10.1109/bibm62325.2024.10822644","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822644","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5093116844","display_name":"Simone Rancati","orcid":"https://orcid.org/0009-0002-4405-1697"},"institutions":[{"id":"https://openalex.org/I25217355","display_name":"University of Pavia","ror":"https://ror.org/00s6t1f81","country_code":"IT","type":"education","lineage":["https://openalex.org/I25217355"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Simone Rancati","raw_affiliation_strings":["University of Pavia,Department of Electrical, Computer and Biomedical Engineering,Pavia,Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pavia,Department of Electrical, Computer and Biomedical Engineering,Pavia,Italy","institution_ids":["https://openalex.org/I25217355"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078722193","display_name":"Daniele Pala","orcid":"https://orcid.org/0000-0001-5741-3349"},"institutions":[{"id":"https://openalex.org/I25217355","display_name":"University of Pavia","ror":"https://ror.org/00s6t1f81","country_code":"IT","type":"education","lineage":["https://openalex.org/I25217355"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Daniele Pala","raw_affiliation_strings":["University of Pavia,Department of Electrical, Computer and Biomedical Engineering,Pavia,Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pavia,Department of Electrical, Computer and Biomedical Engineering,Pavia,Italy","institution_ids":["https://openalex.org/I25217355"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004394877","display_name":"Simone Marini","orcid":"https://orcid.org/0000-0002-5704-3533"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Simone Marini","raw_affiliation_strings":["University of Florida,Department of Epidemiology,Gainsville,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Florida,Department of Epidemiology,Gainsville,USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030387965","display_name":"Marco Salemi","orcid":"https://orcid.org/0000-0003-0136-2102"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marco Salemi","raw_affiliation_strings":["University of Florida,Department of Pathology,Gainsville,USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Florida,Department of Pathology,Gainsville,USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050932220","display_name":"Riccardo Bellazzi","orcid":"https://orcid.org/0000-0002-6974-9808"},"institutions":[{"id":"https://openalex.org/I25217355","display_name":"University of Pavia","ror":"https://ror.org/00s6t1f81","country_code":"IT","type":"education","lineage":["https://openalex.org/I25217355"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Riccardo Bellazzi","raw_affiliation_strings":["University of Pavia,Department of Electrical, Computer and Biomedical Engineering,Pavia,Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pavia,Department of Electrical, Computer and Biomedical Engineering,Pavia,Italy","institution_ids":["https://openalex.org/I25217355"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044714123","display_name":"Giovanna Nicora","orcid":"https://orcid.org/0000-0001-7007-0862"},"institutions":[{"id":"https://openalex.org/I25217355","display_name":"University of Pavia","ror":"https://ror.org/00s6t1f81","country_code":"IT","type":"education","lineage":["https://openalex.org/I25217355"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giovanna Nicora","raw_affiliation_strings":["University of Pavia,Department of Electrical, Computer and Biomedical Engineering,Pavia,Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Pavia,Department of Electrical, Computer and Biomedical Engineering,Pavia,Italy","institution_ids":["https://openalex.org/I25217355"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"6183","last_page":"6188"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.6029000282287598,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10410","display_name":"COVID-19 epidemiological studies","score":0.6029000282287598,"subfield":{"id":"https://openalex.org/subfields/2611","display_name":"Modeling and Simulation"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.5382080078125},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.5373892188072205},{"id":"https://openalex.org/keywords/epidemiology","display_name":"Epidemiology","score":0.45932409167289734},{"id":"https://openalex.org/keywords/dynamics","display_name":"Dynamics (music)","score":0.45015639066696167},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.43443459272384644},{"id":"https://openalex.org/keywords/pandemic","display_name":"Pandemic","score":0.4308887720108032},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.18841364979743958},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.08415213227272034},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.06650212407112122}],"concepts":[{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.5382080078125},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.5373892188072205},{"id":"https://openalex.org/C107130276","wikidata":"https://www.wikidata.org/wiki/Q133805","display_name":"Epidemiology","level":2,"score":0.45932409167289734},{"id":"https://openalex.org/C145912823","wikidata":"https://www.wikidata.org/wiki/Q113558","display_name":"Dynamics (music)","level":2,"score":0.45015639066696167},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.43443459272384644},{"id":"https://openalex.org/C89623803","wikidata":"https://www.wikidata.org/wiki/Q12184","display_name":"Pandemic","level":5,"score":0.4308887720108032},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.18841364979743958},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.08415213227272034},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.06650212407112122},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibm62325.2024.10822644","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822644","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmh:oai:aisberg.unibg.it:10446/292389","is_oa":false,"landing_page_url":"https://hdl.handle.net/10446/292389","pdf_url":null,"source":{"id":"https://openalex.org/S4377196347","display_name":"Aisberg (University of Bergamo)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11039511","host_organization_name":"University of Bergamo","host_organization_lineage":["https://openalex.org/I11039511"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W2414973126","https://openalex.org/W4225851399","https://openalex.org/W4313488627","https://openalex.org/W4313647364","https://openalex.org/W4379650613","https://openalex.org/W4384819142","https://openalex.org/W4388669765","https://openalex.org/W4403731275","https://openalex.org/W6857477353","https://openalex.org/W6862597687"],"related_works":["https://openalex.org/W3046517191","https://openalex.org/W4206669628","https://openalex.org/W4205317059","https://openalex.org/W4224279380","https://openalex.org/W3176864053","https://openalex.org/W4206651655","https://openalex.org/W4206548596","https://openalex.org/W4292098121","https://openalex.org/W4210433452","https://openalex.org/W3036314732"],"abstract_inverted_index":{"The":[0,71],"COVID-19":[1,137],"pandemic":[2,120,157],"has":[3],"profoundly":[4],"impacted":[5],"global":[6],"health,":[7],"leading":[8],"to":[9,45,54,62,150],"millions":[10],"of":[11,91,147,163],"deaths":[12],"and":[13,27,35,80,82,88,110,117,159],"overwhelming":[14],"healthcare":[15],"systems":[16],"worldwide.":[17],"This":[18],"study":[19],"investigates":[20],"the":[21,89,130,145,161],"relationship":[22],"between":[23,115],"SARS-CoV-2":[24],"sequencing":[25,57,99,126,148],"rates":[26,100,127,149],"critical":[28],"epidemiological":[29,63],"parameters,":[30],"such":[31],"as":[32,152],"cases,":[33],"deaths,":[34,111],"ICU":[36,105],"admissions,":[37,106],"across":[38],"25":[39],"European":[40],"countries":[41,116],"from":[42,77],"January":[43],"2020":[44],"November":[46],"2023.":[47],"By":[48],"analyzing":[49],"these":[50],"relationships,":[51],"we":[52],"aim":[53],"determine":[55],"whether":[56],"efforts":[58],"were":[59,101,128],"reactive\u2014in":[60],"response":[61],"pressures\u2014or":[64],"proactive,":[65],"guided":[66],"by":[67],"public":[68],"health":[69,169],"strategies.":[70],"analysis":[72,123],"used":[73],"publicly":[74],"available":[75],"data":[76],"GISAID,":[78],"OxCGRT,":[79],"ECDC,":[81],"included":[83],"weekly":[84],"aggregation,":[85],"correlation":[86],"analysis,":[87],"application":[90],"TimeGPT":[92,122],"for":[93,134,155,166],"predictive":[94],"modeling.":[95],"Results":[96],"show":[97],"that":[98,125],"significantly":[102],"correlated":[103],"with":[104,113],"hospitalizations,":[107],"case":[108],"numbers,":[109],"though":[112],"variability":[114],"over":[118],"different":[119],"phases.":[121],"revealed":[124],"often":[129],"most":[131],"informative":[132],"feature":[133],"predicting":[135],"future":[136,168],"cases":[138],"in":[139],"many":[140],"countries.":[141],"These":[142],"findings":[143],"highlight":[144],"potential":[146],"serve":[151],"early":[153],"indicators":[154],"severe":[156],"outcomes":[158],"underscore":[160],"importance":[162],"context-specific":[164],"approaches":[165],"managing":[167],"crises.":[170]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-01-11T00:00:00"}
