{"id":"https://openalex.org/W4406261328","doi":"https://doi.org/10.1109/bibm62325.2024.10822527","title":"HCMHS: High-Order SNP Interactions Detection Based on Hierarchical Clustering and Multi-Task Harmony Search Algorithm","display_name":"HCMHS: High-Order SNP Interactions Detection Based on Hierarchical Clustering and Multi-Task Harmony Search Algorithm","publication_year":2024,"publication_date":"2024-12-03","ids":{"openalex":"https://openalex.org/W4406261328","doi":"https://doi.org/10.1109/bibm62325.2024.10822527"},"language":"en","primary_location":{"id":"doi:10.1109/bibm62325.2024.10822527","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822527","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103160991","display_name":"Kaiwen Tan","orcid":"https://orcid.org/0000-0002-2770-4863"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Kaiwen Tan","raw_affiliation_strings":["Kunming University of Science and Technology,Faculty of Information Engineering and Automation Yunnan Key Laboratory of Artificial Intelligence,Kunming,China"],"affiliations":[{"raw_affiliation_string":"Kunming University of Science and Technology,Faculty of Information Engineering and Automation Yunnan Key Laboratory of Artificial Intelligence,Kunming,China","institution_ids":["https://openalex.org/I10660446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017727139","display_name":"Jin Tian","orcid":"https://orcid.org/0000-0003-3685-2435"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jin Tian","raw_affiliation_strings":["Kunming University of Science and Technology,Faculty of Information Engineering and Automation Yunnan Key Laboratory of Artificial Intelligence,Kunming,China"],"affiliations":[{"raw_affiliation_string":"Kunming University of Science and Technology,Faculty of Information Engineering and Automation Yunnan Key Laboratory of Artificial Intelligence,Kunming,China","institution_ids":["https://openalex.org/I10660446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101653272","display_name":"Yongbing Zhang","orcid":"https://orcid.org/0009-0008-1568-3728"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongbing Zhang","raw_affiliation_strings":["Kunming University of Science and Technology,Faculty of Information Engineering and Automation Yunnan Key Laboratory of Artificial Intelligence,Kunming,China"],"affiliations":[{"raw_affiliation_string":"Kunming University of Science and Technology,Faculty of Information Engineering and Automation Yunnan Key Laboratory of Artificial Intelligence,Kunming,China","institution_ids":["https://openalex.org/I10660446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083569726","display_name":"Zhenqiu Shu","orcid":"https://orcid.org/0000-0001-5737-3383"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenqiu Shu","raw_affiliation_strings":["Kunming University of Science and Technology,Faculty of Information Engineering and Automation Yunnan Key Laboratory of Artificial Intelligence,Kunming,China"],"affiliations":[{"raw_affiliation_string":"Kunming University of Science and Technology,Faculty of Information Engineering and Automation Yunnan Key Laboratory of Artificial Intelligence,Kunming,China","institution_ids":["https://openalex.org/I10660446"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100619287","display_name":"Zhengtao Yu","orcid":"https://orcid.org/0000-0002-4012-461X"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhengtao Yu","raw_affiliation_strings":["Kunming University of Science and Technology,Faculty of Information Engineering and Automation Yunnan Key Laboratory of Artificial Intelligence,Kunming,China"],"affiliations":[{"raw_affiliation_string":"Kunming University of Science and Technology,Faculty of Information Engineering and Automation Yunnan Key Laboratory of Artificial Intelligence,Kunming,China","institution_ids":["https://openalex.org/I10660446"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5103160991"],"corresponding_institution_ids":["https://openalex.org/I10660446"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.22093152,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"5112","last_page":"5119"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9750000238418579,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9750000238418579,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9629999995231628,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9294999837875366,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/harmony-search","display_name":"Harmony search","score":0.7349823117256165},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6511644721031189},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6123456358909607},{"id":"https://openalex.org/keywords/hierarchical-clustering","display_name":"Hierarchical clustering","score":0.46935898065567017},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.432142972946167},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.36984527111053467},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3447083532810211},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07304483652114868}],"concepts":[{"id":"https://openalex.org/C33099171","wikidata":"https://www.wikidata.org/wiki/Q26208718","display_name":"Harmony search","level":2,"score":0.7349823117256165},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6511644721031189},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6123456358909607},{"id":"https://openalex.org/C92835128","wikidata":"https://www.wikidata.org/wiki/Q1277447","display_name":"Hierarchical clustering","level":3,"score":0.46935898065567017},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.432142972946167},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.36984527111053467},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3447083532810211},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07304483652114868},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm62325.2024.10822527","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822527","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W1481655810","https://openalex.org/W1492273171","https://openalex.org/W1822695366","https://openalex.org/W1968701026","https://openalex.org/W1993817351","https://openalex.org/W2007069550","https://openalex.org/W2019465105","https://openalex.org/W2041170649","https://openalex.org/W2061324458","https://openalex.org/W2092940392","https://openalex.org/W2101350555","https://openalex.org/W2118215201","https://openalex.org/W2120423544","https://openalex.org/W2126964466","https://openalex.org/W2135107356","https://openalex.org/W2152905639","https://openalex.org/W2154572047","https://openalex.org/W2157300960","https://openalex.org/W2307163007","https://openalex.org/W2605140612","https://openalex.org/W2617467681","https://openalex.org/W2619415841","https://openalex.org/W2624902545","https://openalex.org/W2727539851","https://openalex.org/W2900352840","https://openalex.org/W2913095717","https://openalex.org/W2937420412","https://openalex.org/W3004569601","https://openalex.org/W3013264051","https://openalex.org/W4230903726","https://openalex.org/W4236354166","https://openalex.org/W4282940296","https://openalex.org/W4288060525","https://openalex.org/W4387611993"],"related_works":["https://openalex.org/W2372590961","https://openalex.org/W4214893532","https://openalex.org/W4200117979","https://openalex.org/W4294306415","https://openalex.org/W883652255","https://openalex.org/W2028503915","https://openalex.org/W2365965409","https://openalex.org/W2332892177","https://openalex.org/W2366109092","https://openalex.org/W3200375535"],"abstract_inverted_index":{"The":[0,188],"interaction":[1,58,83],"between":[2,139],"SNPs":[3,104,119,149],"plays":[4],"a":[5,32,80,156],"key":[6],"role":[7],"in":[8,56],"revealing":[9],"the":[10,18,24,43,60,137,145,161,180],"genetic":[11],"mechanisms":[12],"of":[13,20,26,62,142,150,163,190],"complex":[14],"diseases.":[15],"However,":[16],"as":[17,95],"order":[19],"SNP":[21,27,57,82,143],"interactions":[22],"increases,":[23],"number":[25],"combinations":[28],"increases":[29],"exponentially,":[30],"presenting":[31],"serious":[33],"combinatorial":[34,44],"explosion":[35,45],"problem.":[36],"Although":[37],"swarm":[38,63],"intelligence":[39,64],"algorithms":[40,65],"can":[41],"alleviate":[42],"problem":[46],"by":[47,69],"optimizing":[48],"search":[49,72,93,146],"paths":[50],"and":[51,71,90,123,173,177],"have":[52],"been":[53],"widely":[54],"used":[55,116],"detection,":[59],"performance":[61,162],"is":[66,114,131,192],"greatly":[67],"affected":[68],"initialization":[70],"direction.":[73],"To":[74,159],"mitigate":[75],"these":[76,127],"issues,":[77],"we":[78,165],"propose":[79],"high-order":[81],"detection":[84],"algorithm":[85],"based":[86,125],"on":[87,126,169],"hierarchical":[88,112],"clustering":[89,113],"multitask":[91],"harmony":[92,98,129,134],"(abbreviated":[94],"HCMHS).":[96],"In":[97,133],"memory":[99,130],"initialization,":[100],"considering":[101,136],"that":[102],"similar":[103],"are":[105,153],"more":[106],"likely":[107],"to":[108,117,184],"form":[109],"pathogenic":[110],"combinations,":[111],"first":[115],"cluster":[118],"into":[120],"different":[121,140],"clusters,":[122,128],"then":[124],"initialized.":[132],"search,":[135],"correlation":[138],"orders":[141,152],"interactions,":[144],"directions":[147],"for":[148],"various":[151],"optimized":[154],"through":[155],"multi-task":[157],"framework.":[158],"verify":[160],"HCMHS,":[164],"carried":[166],"out":[167],"experiments":[168],"58":[170],"simulated":[171],"datasets":[172],"one":[174],"real":[175],"dataset,":[176],"HCMHS":[178,191],"achieved":[179],"best":[181],"results":[182],"compared":[183],"nine":[185],"advanced":[186],"algorithms.":[187],"code":[189],"available":[193],"at":[194],"https://github.com/huoluan17-tian/HCMHS.":[195]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
