{"id":"https://openalex.org/W4406238012","doi":"https://doi.org/10.1109/bibm62325.2024.10822524","title":"Multi-Task Driven Multi-Level Dynamical Fusion for Single-Cell Multi-Omics Cell Type Annotation","display_name":"Multi-Task Driven Multi-Level Dynamical Fusion for Single-Cell Multi-Omics Cell Type Annotation","publication_year":2024,"publication_date":"2024-12-03","ids":{"openalex":"https://openalex.org/W4406238012","doi":"https://doi.org/10.1109/bibm62325.2024.10822524"},"language":"en","primary_location":{"id":"doi:10.1109/bibm62325.2024.10822524","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822524","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108050374","display_name":"Jiawei Li","orcid":"https://orcid.org/0000-0002-8171-478X"},"institutions":[{"id":"https://openalex.org/I162868743","display_name":"Tianjin University","ror":"https://ror.org/012tb2g32","country_code":"CN","type":"education","lineage":["https://openalex.org/I162868743"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jiawei Li","raw_affiliation_strings":["Tianjin University,College of Intelligence and Computing,Tianjin,China,300072"],"affiliations":[{"raw_affiliation_string":"Tianjin University,College of Intelligence and Computing,Tianjin,China,300072","institution_ids":["https://openalex.org/I162868743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012932387","display_name":"Shizhan Chen","orcid":"https://orcid.org/0000-0002-4430-4765"},"institutions":[{"id":"https://openalex.org/I162868743","display_name":"Tianjin University","ror":"https://ror.org/012tb2g32","country_code":"CN","type":"education","lineage":["https://openalex.org/I162868743"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shizhan Chen","raw_affiliation_strings":["Tianjin University,College of Intelligence and Computing,Tianjin,China,300072"],"affiliations":[{"raw_affiliation_string":"Tianjin University,College of Intelligence and Computing,Tianjin,China,300072","institution_ids":["https://openalex.org/I162868743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021826475","display_name":"Zongbo Han","orcid":"https://orcid.org/0000-0001-8272-726X"},"institutions":[{"id":"https://openalex.org/I162868743","display_name":"Tianjin University","ror":"https://ror.org/012tb2g32","country_code":"CN","type":"education","lineage":["https://openalex.org/I162868743"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zongbo Han","raw_affiliation_strings":["Tianjin University,College of Intelligence and Computing,Tianjin,China,300072"],"affiliations":[{"raw_affiliation_string":"Tianjin University,College of Intelligence and Computing,Tianjin,China,300072","institution_ids":["https://openalex.org/I162868743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100318311","display_name":"Wei Li","orcid":"https://orcid.org/0000-0002-9186-1142"},"institutions":[{"id":"https://openalex.org/I205237279","display_name":"Nankai University","ror":"https://ror.org/01y1kjr75","country_code":"CN","type":"education","lineage":["https://openalex.org/I205237279"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Li","raw_affiliation_strings":["Nankai University,College of Artificial Intelligence,Tianjin,China,518055"],"affiliations":[{"raw_affiliation_string":"Nankai University,College of Artificial Intelligence,Tianjin,China,518055","institution_ids":["https://openalex.org/I205237279"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001619694","display_name":"Jijun Tang","orcid":"https://orcid.org/0000-0002-6377-536X"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"funder","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210145761","display_name":"Shenzhen Institutes of Advanced Technology","ror":"https://ror.org/04gh4er46","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210145761"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jijun Tang","raw_affiliation_strings":["Shenzhen Institutes of Advanced Technology,Chinese Academy of Sciences,Shenzhen,China,518055"],"affiliations":[{"raw_affiliation_string":"Shenzhen Institutes of Advanced Technology,Chinese Academy of Sciences,Shenzhen,China,518055","institution_ids":["https://openalex.org/I4210145761","https://openalex.org/I19820366"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112879504","display_name":"Fei Guo","orcid":"https://orcid.org/0000-0002-9279-9547"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fei Guo","raw_affiliation_strings":["Central South University,School of Computer Science and Engineering,Changsha,China,410083"],"affiliations":[{"raw_affiliation_string":"Central South University,School of Computer Science and Engineering,Changsha,China,410083","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5108050374"],"corresponding_institution_ids":["https://openalex.org/I162868743"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.22050817,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1009","last_page":"1014"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9890000224113464,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9797999858856201,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6434183716773987},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6426786780357361},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6212326288223267},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.4121477007865906},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4034796357154846},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.324098140001297},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3046797215938568},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19154438376426697},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08429369330406189},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07415196299552917}],"concepts":[{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6434183716773987},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6426786780357361},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6212326288223267},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.4121477007865906},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4034796357154846},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.324098140001297},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3046797215938568},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19154438376426697},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08429369330406189},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07415196299552917},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm62325.2024.10822524","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822524","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335581","display_name":"Young Scientists Fund","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W2069295116","https://openalex.org/W2107680358","https://openalex.org/W2135937351","https://openalex.org/W2743416243","https://openalex.org/W2768149277","https://openalex.org/W2780102873","https://openalex.org/W2800392236","https://openalex.org/W2948469692","https://openalex.org/W2952582936","https://openalex.org/W2958555575","https://openalex.org/W2965985232","https://openalex.org/W2970565181","https://openalex.org/W3015461837","https://openalex.org/W3159800610","https://openalex.org/W3166627873","https://openalex.org/W3170986249","https://openalex.org/W3193570366","https://openalex.org/W3210860076","https://openalex.org/W4241787340","https://openalex.org/W4312946813","https://openalex.org/W4322766901","https://openalex.org/W4322768301","https://openalex.org/W4379521442","https://openalex.org/W4384405873","https://openalex.org/W4385245566","https://openalex.org/W4388423588","https://openalex.org/W4394955870","https://openalex.org/W4395464504","https://openalex.org/W6631190155"],"related_works":["https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328","https://openalex.org/W4405124681","https://openalex.org/W1533177136","https://openalex.org/W4380994516"],"abstract_inverted_index":{"The":[0],"emergence":[1],"of":[2,12,91],"single-cell":[3,31,72,144],"multi-omics":[4,32,73,145],"sequencing":[5],"technology":[6],"has":[7],"enabled":[8],"the":[9,47,89,96],"simultaneous":[10],"profiling":[11],"diverse":[13,143],"omics":[14],"data":[15,33,48,121],"within":[16],"individual":[17],"cells.":[18],"It":[19,101],"offers":[20],"a":[21,63],"more":[22],"comprehensive":[23],"perspective":[24],"on":[25],"cellular":[26],"phenotypes":[27],"and":[28,37,43,54,83,98,108,127,137],"heterogeneity.":[29],"However,":[30],"are":[34,49],"inherently":[35],"high-dimensional":[36],"heterogeneous.":[38],"Due":[39],"to":[40,87],"technical":[41],"limitations":[42],"scarce":[44],"starting":[45],"materials,":[46],"often":[50],"affected":[51],"by":[52],"noise":[53],"dropout":[55],"effects.":[56],"To":[57],"address":[58],"these":[59,106],"challenges,":[60],"we":[61],"propose":[62],"novel":[64],"multitask":[65],"driven":[66],"multi-level":[67],"dynamical":[68,103,129],"fusion":[69,104,112,130],"algorithm":[70],"for":[71],"cell":[74,155],"type":[75,156],"annotation,":[76],"named":[77],"scMMDyn.":[78],"Our":[79],"approach":[80],"incorporates":[81],"reconstruction":[82,125],"classification":[84],"auxiliary":[85],"tasks":[86,126],"guide":[88],"training":[90],"trustworthy":[92],"modules":[93],"at":[94,134],"both":[95,135],"feature":[97,136],"modality":[99,138],"levels.":[100,139],"executes":[102],"during":[105],"stages":[107],"finally":[109],"achieves":[110],"cross-modality":[111],"via":[113],"an":[114],"attention":[115],"mechanism.":[116],"This":[117],"method":[118,150],"effectively":[119],"mitigates":[120],"quality":[122],"issues":[123],"through":[124],"feature-level":[128],"while":[131],"providing":[132],"interpretability":[133],"Experimental":[140],"results":[141],"across":[142],"datasets":[146],"show":[147],"that":[148],"our":[149],"surpasses":[151],"existing":[152],"approaches":[153],"in":[154],"annotation.":[157]},"counts_by_year":[],"updated_date":"2025-12-27T23:08:20.325037","created_date":"2025-10-10T00:00:00"}
