{"id":"https://openalex.org/W4406259302","doi":"https://doi.org/10.1109/bibm62325.2024.10822460","title":"MNGCCL: Multi-neighborhood graph collaborative contrastive learning for drug-disease association prediction","display_name":"MNGCCL: Multi-neighborhood graph collaborative contrastive learning for drug-disease association prediction","publication_year":2024,"publication_date":"2024-12-03","ids":{"openalex":"https://openalex.org/W4406259302","doi":"https://doi.org/10.1109/bibm62325.2024.10822460"},"language":"en","primary_location":{"id":"doi:10.1109/bibm62325.2024.10822460","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822460","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082967965","display_name":"Chris M\u0131","orcid":"https://orcid.org/0000-0002-5471-8953"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Cheng-Long Mi","raw_affiliation_strings":["Qufu Normal University,the School of Computer Science,Rizhao,China,276826"],"affiliations":[{"raw_affiliation_string":"Qufu Normal University,the School of Computer Science,Rizhao,China,276826","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073144090","display_name":"Jin\u2010Xing Liu","orcid":"https://orcid.org/0000-0001-6104-2149"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jin-Xing Liu","raw_affiliation_strings":["University of Health and Rehabilitation Sciences,the School of Health and Life Sciences,Qingdao,China,266113"],"affiliations":[{"raw_affiliation_string":"University of Health and Rehabilitation Sciences,the School of Health and Life Sciences,Qingdao,China,266113","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100417873","display_name":"Xu Wang","orcid":"https://orcid.org/0009-0000-0655-2509"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xu Wang","raw_affiliation_strings":["Qufu Normal University,the School of Computer Science,Rizhao,China,276826"],"affiliations":[{"raw_affiliation_string":"Qufu Normal University,the School of Computer Science,Rizhao,China,276826","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007539735","display_name":"Junliang Shang","orcid":"https://orcid.org/0000-0002-8488-2228"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun-Liang Shang","raw_affiliation_strings":["Qufu Normal University,the School of Computer Science,Rizhao,China,276826"],"affiliations":[{"raw_affiliation_string":"Qufu Normal University,the School of Computer Science,Rizhao,China,276826","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100686442","display_name":"Rong Zhu","orcid":"https://orcid.org/0000-0003-4019-8587"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rong Zhu","raw_affiliation_strings":["Qufu Normal University,the School of Computer Science,Rizhao,China,276826"],"affiliations":[{"raw_affiliation_string":"Qufu Normal University,the School of Computer Science,Rizhao,China,276826","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100347490","display_name":"Juan Wang","orcid":"https://orcid.org/0000-0003-3934-0435"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Juan Wang","raw_affiliation_strings":["Qufu Normal University,the School of Computer Science,Rizhao,China,276826"],"affiliations":[{"raw_affiliation_string":"Qufu Normal University,the School of Computer Science,Rizhao,China,276826","institution_ids":["https://openalex.org/I202126657"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100648398","display_name":"Ling-Yun Dai","orcid":"https://orcid.org/0000-0002-5473-323X"},"institutions":[{"id":"https://openalex.org/I202126657","display_name":"Qufu Normal University","ror":"https://ror.org/03ceheh96","country_code":"CN","type":"education","lineage":["https://openalex.org/I202126657"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ling-Yun Dai","raw_affiliation_strings":["Qufu Normal University,the School of Computer Science,Rizhao,China,276826"],"affiliations":[{"raw_affiliation_string":"Qufu Normal University,the School of Computer Science,Rizhao,China,276826","institution_ids":["https://openalex.org/I202126657"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5082967965"],"corresponding_institution_ids":["https://openalex.org/I202126657"],"apc_list":null,"apc_paid":null,"fwci":0.2744,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.6206664,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"5024","last_page":"5031"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9580000042915344,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9580000042915344,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9070000052452087,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6807018518447876},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5503725409507751},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.4878695011138916},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.46046730875968933},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.42980867624282837},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3300349712371826},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3047355115413666},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.13175266981124878}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6807018518447876},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5503725409507751},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.4878695011138916},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.46046730875968933},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.42980867624282837},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3300349712371826},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3047355115413666},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.13175266981124878},{"id":"https://openalex.org/C542102704","wikidata":"https://www.wikidata.org/wiki/Q183257","display_name":"Psychotherapist","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm62325.2024.10822460","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822460","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W1992433817","https://openalex.org/W1998510250","https://openalex.org/W2018610726","https://openalex.org/W2113072832","https://openalex.org/W2133299088","https://openalex.org/W2346950316","https://openalex.org/W2809156537","https://openalex.org/W2896002881","https://openalex.org/W2946099214","https://openalex.org/W3000082418","https://openalex.org/W3016077459","https://openalex.org/W3022121690","https://openalex.org/W3035135368","https://openalex.org/W3082153070","https://openalex.org/W3093030756","https://openalex.org/W4210852924","https://openalex.org/W4293363567","https://openalex.org/W4318071685","https://openalex.org/W4366824201","https://openalex.org/W4377289963","https://openalex.org/W4378952262","https://openalex.org/W4384818885","https://openalex.org/W4390499131","https://openalex.org/W6647346822","https://openalex.org/W6684342279","https://openalex.org/W6738964360","https://openalex.org/W6752779016","https://openalex.org/W6771791230","https://openalex.org/W6773620992","https://openalex.org/W6773927312","https://openalex.org/W6784694379","https://openalex.org/W6794507047","https://openalex.org/W6805039355","https://openalex.org/W6805335575","https://openalex.org/W6806691924","https://openalex.org/W6806859647","https://openalex.org/W6843266279"],"related_works":["https://openalex.org/W2352440174","https://openalex.org/W4309440960","https://openalex.org/W2062168445","https://openalex.org/W2348940229","https://openalex.org/W2363046693","https://openalex.org/W2389491697","https://openalex.org/W4301044699","https://openalex.org/W2067476155","https://openalex.org/W2728345702","https://openalex.org/W2352562594"],"abstract_inverted_index":{"Exploring":[0],"new":[1,127],"therapeutic":[2],"applications":[3],"for":[4,61,130,164,182],"existing":[5],"drugs":[6,99,141],"can":[7],"effectively":[8,23,75],"reduce":[9],"drug":[10,162,183],"development":[11],"costs.":[12],"However,":[13],"current":[14],"drug-disease":[15],"association":[16],"(DDA)":[17],"prediction":[18],"methods":[19,35],"often":[20],"fail":[21],"to":[22,36,74,117],"integrate":[24,118],"multi-domain":[25,30,80,85],"information.":[26],"The":[27,82],"lack":[28],"of":[29,98,140,192],"information":[31,123],"integration":[32],"causes":[33],"these":[34,119],"heavily":[37],"rely":[38],"on":[39],"prior":[40],"knowledge,":[41],"thereby":[42],"limiting":[43],"their":[44],"generalization":[45],"ability.":[46],"To":[47],"address":[48],"this":[49,90],"issue,":[50],"we":[51],"developed":[52],"a":[53,68],"Multi-Domain":[54],"Graph":[55],"Collaborative":[56],"Contrastive":[57],"Learning":[58],"(MNGCCL)":[59],"model":[60],"DDA":[62,145,186],"prediction.":[63],"In":[64,144],"the":[65,137,190],"MNGCCL":[66,111,147,159],"framework,":[67],"feature":[69,86],"extraction":[70,87],"module":[71,91],"is":[72],"designed":[73],"extract":[76],"both":[77],"single-domain":[78,83],"and":[79,84,100,108,121,142,155,167,185],"features.":[81],"components":[88],"in":[89,93,161,189],"run":[92],"parallel,":[94],"extracting":[95],"key":[96],"features":[97,120,139],"diseases":[101],"from":[102],"different":[103],"latent":[104],"spaces":[105],"(e.g.,":[106],"homogeneous":[107],"heterogeneous":[109],"networks).":[110],"employs":[112],"graph":[113],"collaborative":[114],"contrastive":[115],"learning":[116],"enhances":[122],"interaction":[124],"by":[125],"designing":[126],"node":[128],"scoring":[129],"negative":[131],"sample":[132],"sampling.":[133],"This":[134],"significantly":[135],"enriches":[136],"semantic":[138],"diseases.":[143],"prediction,":[146,187],"outperforms":[148],"other":[149],"state-of-the-art":[150],"models":[151],"across":[152],"various":[153],"datasets":[154],"partitioning":[156],"methods.":[157],"Notably,":[158],"excels":[160],"repositioning":[163,184],"Parkinson\u2019s":[165],"disease":[166],"Alzheimer\u2019s":[168],"disease,":[169],"as":[170,172],"well":[171],"handling":[173],"data":[174],"sparsity.":[175],"These":[176],"findings":[177],"highlight":[178],"its":[179],"tremendous":[180],"potential":[181],"especially":[188],"context":[191],"sparse":[193],"omics":[194],"data.":[195]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
