{"id":"https://openalex.org/W4406238303","doi":"https://doi.org/10.1109/bibm62325.2024.10822456","title":"DP-BERT: a pre-trained deep language model for depression prediction using microarray data","display_name":"DP-BERT: a pre-trained deep language model for depression prediction using microarray data","publication_year":2024,"publication_date":"2024-12-03","ids":{"openalex":"https://openalex.org/W4406238303","doi":"https://doi.org/10.1109/bibm62325.2024.10822456"},"language":"en","primary_location":{"id":"doi:10.1109/bibm62325.2024.10822456","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822456","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014526931","display_name":"Junyu Gao","orcid":"https://orcid.org/0000-0002-8105-5497"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Junyu Gao","raw_affiliation_strings":["Central South University,School of Computer Science and Engineering,Changsha,China,410083"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central South University,School of Computer Science and Engineering,Changsha,China,410083","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033885404","display_name":"Min Zeng","orcid":"https://orcid.org/0000-0002-1726-0955"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Zeng","raw_affiliation_strings":["Central South University,School of Computer Science and Engineering,Changsha,China,410083"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central South University,School of Computer Science and Engineering,Changsha,China,410083","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100346366","display_name":"Yiming Li","orcid":"https://orcid.org/0000-0003-4602-3905"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiming Li","raw_affiliation_strings":["Central South University,School of Computer Science and Engineering,Changsha,China,410083"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central South University,School of Computer Science and Engineering,Changsha,China,410083","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100321391","display_name":"Fang Wang","orcid":"https://orcid.org/0000-0002-1491-5207"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fang Wang","raw_affiliation_strings":["Harbin Institute of Technology,School of Computer Science and Technology,Harbin,China,150001"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harbin Institute of Technology,School of Computer Science and Technology,Harbin,China,150001","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044328870","display_name":"Ruiqing Zheng","orcid":"https://orcid.org/0000-0001-6372-6798"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ruiqing Zheng","raw_affiliation_strings":["Central South University,School of Computer Science and Engineering,Changsha,China,410083"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central South University,School of Computer Science and Engineering,Changsha,China,410083","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100642610","display_name":"Jin Liu","orcid":"https://orcid.org/0000-0002-4961-7074"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jin Liu","raw_affiliation_strings":["Central South University,School of Computer Science and Engineering,Changsha,China,410083"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central South University,School of Computer Science and Engineering,Changsha,China,410083","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112879504","display_name":"Fei Guo","orcid":"https://orcid.org/0000-0003-2911-7643"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fei Guo","raw_affiliation_strings":["Central South University,School of Computer Science and Engineering,Changsha,China,410083"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central South University,School of Computer Science and Engineering,Changsha,China,410083","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100719013","display_name":"Min Li","orcid":"https://orcid.org/0000-0002-0188-1394"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Li","raw_affiliation_strings":["Central South University,School of Computer Science and Engineering,Changsha,China,410083"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central South University,School of Computer Science and Engineering,Changsha,China,410083","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"919","last_page":"924"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12488","display_name":"Mental Health via Writing","score":0.7660999894142151,"subfield":{"id":"https://openalex.org/subfields/3207","display_name":"Social Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T12488","display_name":"Mental Health via Writing","score":0.7660999894142151,"subfield":{"id":"https://openalex.org/subfields/3207","display_name":"Social Psychology"},"field":{"id":"https://openalex.org/fields/32","display_name":"Psychology"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.724399983882904,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12702","display_name":"Brain Tumor Detection and Classification","score":0.7081000208854675,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6579375267028809},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5251493453979492},{"id":"https://openalex.org/keywords/language-model","display_name":"Language model","score":0.5235744714736938},{"id":"https://openalex.org/keywords/data-modeling","display_name":"Data modeling","score":0.5016446113586426},{"id":"https://openalex.org/keywords/depression","display_name":"Depression (economics)","score":0.491898775100708},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4419670104980469},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.32110774517059326},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.08255365490913391}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6579375267028809},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5251493453979492},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.5235744714736938},{"id":"https://openalex.org/C67186912","wikidata":"https://www.wikidata.org/wiki/Q367664","display_name":"Data modeling","level":2,"score":0.5016446113586426},{"id":"https://openalex.org/C2776867660","wikidata":"https://www.wikidata.org/wiki/Q1814941","display_name":"Depression (economics)","level":2,"score":0.491898775100708},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4419670104980469},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.32110774517059326},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.08255365490913391},{"id":"https://openalex.org/C139719470","wikidata":"https://www.wikidata.org/wiki/Q39680","display_name":"Macroeconomics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm62325.2024.10822456","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822456","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1968453868","https://openalex.org/W2096856326","https://openalex.org/W2118258530","https://openalex.org/W2146512944","https://openalex.org/W2952631022","https://openalex.org/W2968912020","https://openalex.org/W2971405760","https://openalex.org/W2980328141","https://openalex.org/W2980870427","https://openalex.org/W3021228021","https://openalex.org/W3048988555","https://openalex.org/W3150207085","https://openalex.org/W3210734461","https://openalex.org/W4244502008","https://openalex.org/W4292200431","https://openalex.org/W4297243391","https://openalex.org/W4310594072","https://openalex.org/W4385768058","https://openalex.org/W4389925851","https://openalex.org/W4401942611","https://openalex.org/W6755207826"],"related_works":["https://openalex.org/W2086259589","https://openalex.org/W2012885586","https://openalex.org/W2961085424","https://openalex.org/W2169518243","https://openalex.org/W59104321","https://openalex.org/W2517686979","https://openalex.org/W2049729969","https://openalex.org/W2198484008","https://openalex.org/W3157863382","https://openalex.org/W1993291419"],"abstract_inverted_index":{"In":[0],"recent":[1],"years,":[2],"the":[3,12,23,38,55,141],"increasing":[4],"number":[5],"of":[6,15,25,57,111,126],"individuals":[7],"diagnosed":[8],"with":[9],"depression":[10,27,47,89,135,148],"and":[11,69,78,104],"growing":[13],"awareness":[14],"its":[16],"impact":[17],"on":[18,54,93],"modern":[19],"society":[20],"have":[21],"highlighted":[22],"significance":[24],"accurate":[26],"diagnosis.":[28],"Microarray":[29],"data":[30,51,114],"has":[31],"played":[32],"a":[33,88,102,108],"crucial":[34],"role":[35],"in":[36,147],"uncovering":[37],"genetic":[39],"mechanisms":[40],"underlying":[41],"depression.":[42],"However,":[43],"existing":[44],"methods":[45],"for":[46,119,134],"prediction":[48,90],"using":[49],"microarray":[50,113],"often":[52],"rely":[53],"selection":[56],"differentially":[58],"expressed":[59],"genes.":[60],"This":[61],"approach":[62],"disregards":[63],"important":[64],"information":[65],"from":[66,97,115,156],"other":[67],"genes":[68],"is":[70,132],"susceptible":[71],"to":[72,121],"batch":[73],"effects,":[74],"thereby":[75],"limiting":[76],"generalizability":[77],"model":[79,91,143],"stability.":[80],"To":[81],"address":[82],"these":[83],"limitations,":[84],"we":[85],"propose":[86],"DP-BERT,":[87],"based":[92],"Bidirectional":[94],"Encoder":[95],"Representations":[96],"Transformers":[98],"(BERT).":[99],"DP-BERT":[100],"follows":[101],"pre-training":[103],"fine-tuning":[105,131],"paradigm,":[106],"leveraging":[107],"large":[109],"amount":[110],"unlabeled":[112],"diverse":[116],"sequencing":[117],"platforms":[118],"pretraining":[120],"extract":[122],"comprehensive":[123],"genetic-level":[124],"representations":[125],"psychiatric":[127],"disorders.":[128],"Subsequently,":[129],"supervised":[130],"performed":[133],"prediction.":[136,149],"Experimental":[137],"results":[138],"demonstrate":[139],"that":[140],"pre-trained":[142],"achieves":[144],"superior":[145],"performance":[146],"The":[150],"source":[151],"code":[152],"can":[153],"be":[154],"obtained":[155],"https://github.com/CSUBioGroup/DP-BERT.":[157]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
