{"id":"https://openalex.org/W4406259723","doi":"https://doi.org/10.1109/bibm62325.2024.10822451","title":"TCM-FTP: Fine-Tuning Large Language Models for Herbal Prescription Prediction","display_name":"TCM-FTP: Fine-Tuning Large Language Models for Herbal Prescription Prediction","publication_year":2024,"publication_date":"2024-12-03","ids":{"openalex":"https://openalex.org/W4406259723","doi":"https://doi.org/10.1109/bibm62325.2024.10822451"},"language":"en","primary_location":{"id":"doi:10.1109/bibm62325.2024.10822451","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822451","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101756360","display_name":"Xingzhi Zhou","orcid":"https://orcid.org/0009-0001-9496-0285"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]},{"id":"https://openalex.org/I21193070","display_name":"Beijing Jiaotong University","ror":"https://ror.org/01yj56c84","country_code":"CN","type":"education","lineage":["https://openalex.org/I21193070"]}],"countries":["CN","HK"],"is_corresponding":true,"raw_author_name":"Xingzhi Zhou","raw_affiliation_strings":["Beijing Jiaotong University,Institute of Medical Intelligence,Department of Artificial Intelligence, Beijing Key Lab of Traffic Data Analysis and Mining, School of Computer Science &amp; Technology,Beijing,China,100044","The Hong Kong University of Science and Technology,Department of Computer Science and Technology,Hong Kong,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Jiaotong University,Institute of Medical Intelligence,Department of Artificial Intelligence, Beijing Key Lab of Traffic Data Analysis and Mining, School of Computer Science &amp; Technology,Beijing,China,100044","institution_ids":["https://openalex.org/I21193070"]},{"raw_affiliation_string":"The Hong Kong University of Science and Technology,Department of Computer Science and Technology,Hong Kong,China","institution_ids":["https://openalex.org/I200769079","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101406351","display_name":"Dong Xin","orcid":"https://orcid.org/0000-0002-1414-9354"},"institutions":[{"id":"https://openalex.org/I21193070","display_name":"Beijing Jiaotong University","ror":"https://ror.org/01yj56c84","country_code":"CN","type":"education","lineage":["https://openalex.org/I21193070"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xin Dong","raw_affiliation_strings":["Beijing Jiaotong University,Institute of Medical Intelligence,Department of Artificial Intelligence, Beijing Key Lab of Traffic Data Analysis and Mining, School of Computer Science &amp; Technology,Beijing,China,100044"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Jiaotong University,Institute of Medical Intelligence,Department of Artificial Intelligence, Beijing Key Lab of Traffic Data Analysis and Mining, School of Computer Science &amp; Technology,Beijing,China,100044","institution_ids":["https://openalex.org/I21193070"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109065420","display_name":"Chunhao Li","orcid":"https://orcid.org/0000-0001-9872-7774"},"institutions":[{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Chunhao Li","raw_affiliation_strings":["The Hong Kong University of Science and Technology,Department of Computer Science and Technology,Hong Kong,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Hong Kong University of Science and Technology,Department of Computer Science and Technology,Hong Kong,China","institution_ids":["https://openalex.org/I200769079","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114183453","display_name":"Yuning Bai","orcid":null},"institutions":[{"id":"https://openalex.org/I4210146387","display_name":"Guang\u2019anmen Hospital","ror":"https://ror.org/04gjmb875","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210146387"]},{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuning Bai","raw_affiliation_strings":["China Academy of Chinese Medical Sciences,Guang&#x2019;anmen Hospital,Beijing,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China Academy of Chinese Medical Sciences,Guang&#x2019;anmen Hospital,Beijing,China","institution_ids":["https://openalex.org/I200296433","https://openalex.org/I4210146387"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029919944","display_name":"Yulong Xu","orcid":"https://orcid.org/0009-0008-3898-8938"},"institutions":[{"id":"https://openalex.org/I4210155511","display_name":"First Affiliated Hospital of Henan University","ror":"https://ror.org/0536rsk67","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210155511"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yulong Xu","raw_affiliation_strings":["Henan University of Chinese Medicine,School of Information Technology,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Henan University of Chinese Medicine,School of Information Technology,China","institution_ids":["https://openalex.org/I4210155511"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084054549","display_name":"Ka Chun Cheung","orcid":"https://orcid.org/0000-0002-2939-4686"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ka Chun Cheung","raw_affiliation_strings":["NVIDIA,NVAITC,Hong Kong,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NVIDIA,NVAITC,Hong Kong,China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045657745","display_name":"Shriya Se","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Simon See","raw_affiliation_strings":["NVIDIA,NVAITC,Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NVIDIA,NVAITC,Singapore","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101334512","display_name":"Xinpeng Song","orcid":null},"institutions":[{"id":"https://openalex.org/I21193070","display_name":"Beijing Jiaotong University","ror":"https://ror.org/01yj56c84","country_code":"CN","type":"education","lineage":["https://openalex.org/I21193070"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinpeng Song","raw_affiliation_strings":["Beijing Jiaotong University,Institute of Medical Intelligence,Department of Artificial Intelligence, Beijing Key Lab of Traffic Data Analysis and Mining, School of Computer Science &amp; Technology,Beijing,China,100044"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Jiaotong University,Institute of Medical Intelligence,Department of Artificial Intelligence, Beijing Key Lab of Traffic Data Analysis and Mining, School of Computer Science &amp; Technology,Beijing,China,100044","institution_ids":["https://openalex.org/I21193070"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012982867","display_name":"Runshun Zhang","orcid":"https://orcid.org/0000-0002-7127-8865"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Runshun Zhang","raw_affiliation_strings":["NVIDIA,NVAITC,Hong Kong,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NVIDIA,NVAITC,Hong Kong,China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115839934","display_name":"Xuezhong Zho","orcid":null},"institutions":[{"id":"https://openalex.org/I21193070","display_name":"Beijing Jiaotong University","ror":"https://ror.org/01yj56c84","country_code":"CN","type":"education","lineage":["https://openalex.org/I21193070"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Xuezhong Zhou","raw_affiliation_strings":["Beijing Jiaotong University,Institute of Medical Intelligence,Department of Artificial Intelligence, Beijing Key Lab of Traffic Data Analysis and Mining, School of Computer Science &amp; Technology,Beijing,China,100044","The Hong Kong University of Science and Technology,Department of Computer Science and Technology,Hong Kong,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Jiaotong University,Institute of Medical Intelligence,Department of Artificial Intelligence, Beijing Key Lab of Traffic Data Analysis and Mining, School of Computer Science &amp; Technology,Beijing,China,100044","institution_ids":["https://openalex.org/I21193070"]},{"raw_affiliation_string":"The Hong Kong University of Science and Technology,Department of Computer Science and Technology,Hong Kong,China","institution_ids":["https://openalex.org/I200769079","https://openalex.org/I889458895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070840566","display_name":"Nevin L. Zhang","orcid":"https://orcid.org/0000-0002-4662-3217"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Nevin L. Zhang","raw_affiliation_strings":["The Hong Kong University of Science and Technology,Department of Computer Science and Technology,Hong Kong,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Hong Kong University of Science and Technology,Department of Computer Science and Technology,Hong Kong,China","institution_ids":["https://openalex.org/I200769079","https://openalex.org/I889458895"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5101756360"],"corresponding_institution_ids":["https://openalex.org/I200769079","https://openalex.org/I21193070","https://openalex.org/I889458895"],"apc_list":null,"apc_paid":null,"fwci":12.9278,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.9899915,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":null,"issue":null,"first_page":"4092","last_page":"4097"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12647","display_name":"Traditional Chinese Medicine Studies","score":0.9693999886512756,"subfield":{"id":"https://openalex.org/subfields/2707","display_name":"Complementary and alternative medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12647","display_name":"Traditional Chinese Medicine Studies","score":0.9693999886512756,"subfield":{"id":"https://openalex.org/subfields/2707","display_name":"Complementary and alternative medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13238","display_name":"Botanical Studies and Applications","score":0.9168000221252441,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/medical-prescription","display_name":"Medical prescription","score":0.6954784393310547},{"id":"https://openalex.org/keywords/file-transfer-protocol","display_name":"File Transfer Protocol","score":0.6420220136642456},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6105473041534424},{"id":"https://openalex.org/keywords/language-model","display_name":"Language model","score":0.4746863543987274},{"id":"https://openalex.org/keywords/session","display_name":"Session (web analytics)","score":0.4621255099773407},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.39855846762657166},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33192458748817444},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.18728312849998474},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.14058402180671692},{"id":"https://openalex.org/keywords/the-internet","display_name":"The Internet","score":0.09623247385025024},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.08877590298652649}],"concepts":[{"id":"https://openalex.org/C2426938","wikidata":"https://www.wikidata.org/wiki/Q3355478","display_name":"Medical prescription","level":2,"score":0.6954784393310547},{"id":"https://openalex.org/C169485995","wikidata":"https://www.wikidata.org/wiki/Q42283","display_name":"File Transfer Protocol","level":3,"score":0.6420220136642456},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6105473041534424},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.4746863543987274},{"id":"https://openalex.org/C2779182362","wikidata":"https://www.wikidata.org/wiki/Q17126187","display_name":"Session (web analytics)","level":2,"score":0.4621255099773407},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.39855846762657166},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33192458748817444},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.18728312849998474},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.14058402180671692},{"id":"https://openalex.org/C110875604","wikidata":"https://www.wikidata.org/wiki/Q75","display_name":"The Internet","level":2,"score":0.09623247385025024},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.08877590298652649}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibm62325.2024.10822451","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822451","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmh:oai:repository.hkust.edu.hk:1783.1-146593","is_oa":false,"landing_page_url":"http://repository.hkust.edu.hk/ir/Record/1783.1-146593","pdf_url":null,"source":{"id":"https://openalex.org/S4306401796","display_name":"Rare & Special e-Zone (The Hong Kong University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I200769079","host_organization_name":"Hong Kong University of Science and Technology","host_organization_lineage":["https://openalex.org/I200769079"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Conference paper"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.5099999904632568}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W2130942839","https://openalex.org/W2782374321","https://openalex.org/W2942231519","https://openalex.org/W2974632525","https://openalex.org/W2981531088","https://openalex.org/W3004983594","https://openalex.org/W3024699962","https://openalex.org/W3128543601","https://openalex.org/W3162532547","https://openalex.org/W3200402897","https://openalex.org/W3214433768","https://openalex.org/W4205176794","https://openalex.org/W4205794382","https://openalex.org/W4246237810","https://openalex.org/W4322718191","https://openalex.org/W4366198844","https://openalex.org/W4389520259","https://openalex.org/W4390970707","https://openalex.org/W4393153123","https://openalex.org/W4394694893","https://openalex.org/W4399319451","https://openalex.org/W6679436768","https://openalex.org/W6729550987","https://openalex.org/W6796581206","https://openalex.org/W6846002521"],"related_works":["https://openalex.org/W2349516242","https://openalex.org/W2378353542","https://openalex.org/W2274312645","https://openalex.org/W2358003099","https://openalex.org/W2479761186","https://openalex.org/W2373243130","https://openalex.org/W3088189910","https://openalex.org/W2389928460","https://openalex.org/W2351853150","https://openalex.org/W2386192326"],"abstract_inverted_index":{"Traditional":[0],"Chinese":[1],"medicine":[2],"(TCM)":[3],"has":[4],"relied":[5],"on":[6,96],"specific":[7],"combinations":[8],"of":[9,21,44,127,147,168],"herbs":[10,115],"in":[11,73,138],"prescriptions":[12,25],"to":[13,41,86,179],"treat":[14],"various":[15],"symptoms":[16,53],"and":[17,48,54,174],"signs":[18],"for":[19,170],"thousands":[20],"years.":[22],"Predicting":[23],"TCM":[24,171],"poses":[26],"a":[27,63,80,104,142],"fascinating":[28],"technical":[29],"challenge":[30],"with":[31],"significant":[32],"practical":[33,67],"implications.":[34],"However,":[35],"this":[36],"task":[37],"faces":[38],"limitations":[39],"due":[40],"the":[42,49,166],"scarcity":[43],"high-quality":[45],"clinical":[46],"datasets":[47],"complex":[50],"relationship":[51],"between":[52],"herbs.":[55],"To":[56],"address":[57],"these":[58],"issues,":[59],"we":[60,99],"introduce":[61],"DigestDS,":[62],"novel":[64],"dataset":[65],"comprising":[66],"medical":[68],"records":[69],"from":[70],"experienced":[71],"experts":[72],"digestive":[74],"system":[75],"diseases.":[76],"We":[77],"also":[78],"propose":[79],"method,":[81],"TCM-FTP":[82,109,123],"(TCM":[83],"Fine-Tuning":[84],"Pre-trained),":[85],"leverage":[87],"pre-trained":[88],"large":[89],"language":[90],"models":[91],"(LLMs)":[92],"via":[93],"supervised":[94],"fine-tuning":[95,153,169],"DigestDS.":[97],"Additionally,":[98],"enhance":[100],"computational":[101],"efficiency":[102],"using":[103],"low-rank":[105],"adaptation":[106],"technique.":[107],"Moreover,":[108],"incorporates":[110],"data":[111],"augmentation":[112],"by":[113],"permuting":[114],"within":[116],"prescriptions,":[117],"exploiting":[118],"their":[119],"order-agnostic":[120],"nature.":[121],"Impressively,":[122],"achieves":[124],"an":[125,176],"F1-score":[126],"0.8031,":[128],"significantly":[129],"outperforming":[130],"previous":[131],"methods.":[132],"Furthermore,":[133],"it":[134],"demonstrates":[135],"remarkable":[136],"accuracy":[137],"dosage":[139],"prediction,":[140],"achieving":[141],"normalized":[143],"mean":[144],"square":[145],"error":[146],"0.0604.":[148],"In":[149],"contrast,":[150],"LLMs":[151,158],"without":[152],"exhibit":[154],"poor":[155],"performance.":[156],"Although":[157],"have":[159],"demonstrated":[160],"wide-ranging":[161],"capabilities,":[162],"our":[163],"work":[164],"underscores":[165],"necessity":[167],"prescription":[172],"prediction":[173],"presents":[175],"effective":[177],"way":[178],"accomplish":[180],"this.":[181]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":14}],"updated_date":"2026-04-25T08:17:42.794288","created_date":"2025-10-10T00:00:00"}
