{"id":"https://openalex.org/W4406260286","doi":"https://doi.org/10.1109/bibm62325.2024.10822247","title":"Network Embedding for Peripheral Weak Genetic Effects of Complex Diseases","display_name":"Network Embedding for Peripheral Weak Genetic Effects of Complex Diseases","publication_year":2024,"publication_date":"2024-12-03","ids":{"openalex":"https://openalex.org/W4406260286","doi":"https://doi.org/10.1109/bibm62325.2024.10822247"},"language":"en","primary_location":{"id":"doi:10.1109/bibm62325.2024.10822247","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822247","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039808795","display_name":"Jie Li","orcid":"https://orcid.org/0000-0002-6912-3346"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jie Li","raw_affiliation_strings":["Xidian University,School of Computer Science and Technology,Xi&#x2019;an,China"],"affiliations":[{"raw_affiliation_string":"Xidian University,School of Computer Science and Technology,Xi&#x2019;an,China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054607668","display_name":"Bingbo Wang","orcid":"https://orcid.org/0000-0002-1808-1852"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bingbo Wang","raw_affiliation_strings":["Xidian University,School of Computer Science and Technology,Xi&#x2019;an,China"],"affiliations":[{"raw_affiliation_string":"Xidian University,School of Computer Science and Technology,Xi&#x2019;an,China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101678213","display_name":"Chao Han","orcid":"https://orcid.org/0000-0002-7924-298X"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chao Han","raw_affiliation_strings":["Xidian University,School of Computer Science and Technology,Xi&#x2019;an,China"],"affiliations":[{"raw_affiliation_string":"Xidian University,School of Computer Science and Technology,Xi&#x2019;an,China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042489604","display_name":"Jiaojiao He","orcid":null},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiaojiao He","raw_affiliation_strings":["Xidian University,School of Computer Science and Technology,Xi&#x2019;an,China"],"affiliations":[{"raw_affiliation_string":"Xidian University,School of Computer Science and Technology,Xi&#x2019;an,China","institution_ids":["https://openalex.org/I149594827"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5039808795"],"corresponding_institution_ids":["https://openalex.org/I149594827"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.19099352,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"6099","last_page":"6106"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8819000124931335,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.8819000124931335,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.586336612701416},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.5751191973686218},{"id":"https://openalex.org/keywords/peripheral","display_name":"Peripheral","score":0.4422713816165924},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3671947121620178},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2221532166004181},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21089118719100952}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.586336612701416},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.5751191973686218},{"id":"https://openalex.org/C46762472","wikidata":"https://www.wikidata.org/wiki/Q178648","display_name":"Peripheral","level":2,"score":0.4422713816165924},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3671947121620178},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2221532166004181},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21089118719100952},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm62325.2024.10822247","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822247","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W1490161904","https://openalex.org/W2016854825","https://openalex.org/W2023475151","https://openalex.org/W2030396834","https://openalex.org/W2045761141","https://openalex.org/W2048258507","https://openalex.org/W2051314902","https://openalex.org/W2057685268","https://openalex.org/W2071779278","https://openalex.org/W2093902900","https://openalex.org/W2101357408","https://openalex.org/W2106147155","https://openalex.org/W2119412782","https://openalex.org/W2131848047","https://openalex.org/W2146512944","https://openalex.org/W2148721393","https://openalex.org/W2154851992","https://openalex.org/W2163924952","https://openalex.org/W2179438025","https://openalex.org/W2201399580","https://openalex.org/W2241686927","https://openalex.org/W2248907500","https://openalex.org/W2254879037","https://openalex.org/W2264585211","https://openalex.org/W2295275561","https://openalex.org/W2483498315","https://openalex.org/W2592063047","https://openalex.org/W2593488635","https://openalex.org/W2607500032","https://openalex.org/W2626606138","https://openalex.org/W2792234394","https://openalex.org/W2899971546","https://openalex.org/W2904763455","https://openalex.org/W2952835495","https://openalex.org/W2962756421","https://openalex.org/W2963243933","https://openalex.org/W2982521190","https://openalex.org/W3102939328","https://openalex.org/W3159961265","https://openalex.org/W3163399473","https://openalex.org/W3209577504","https://openalex.org/W4310238904","https://openalex.org/W4313452885","https://openalex.org/W6675750144"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2081900870","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890"],"abstract_inverted_index":{"Complex":[0],"diseases":[1],"are":[2,42],"determined":[3],"by":[4],"many":[5,59],"genetic":[6,33,106],"and":[7,63,118,134,146,157,216,229],"environmental":[8],"factors.":[9],"The":[10,26],"Omnigenic":[11],"model":[12,17,27],"provides":[13],"a":[14,36,178,213],"new":[15],"conceptual":[16],"for":[18,218],"exploring":[19],"the":[20,31,45,52,65,77,83,101,104,112,116,120,127,138,190,220],"pathogenic":[21],"mechanism":[22],"of":[23,35,39,51,68,79,85,103,108,115,130,194,223],"complex":[24,55,89],"diseases.":[25,56,90],"points":[28],"out":[29],"that":[30,189],"weak":[32,105,123,152,183,221],"effects":[34,107,222],"large":[37],"number":[38],"peripheral":[40,69,80,109,147,162,224],"genes":[41,81,87,110,114],"superimposed":[43],"on":[44,76,82,111,141,182],"core":[46,86,113,145],"genes,":[47,163,225],"thus":[48],"contributing":[49],"most":[50],"heritability":[53],"to":[54,99,160],"At":[57],"present,":[58],"studies":[60,73],"have":[61,74],"explored":[62],"verified":[64],"important":[66],"role":[67],"genes.":[70,148],"However,":[71],"few":[72],"focused":[75],"impact":[78,102,121],"regulation":[84],"in":[88,197],"Therefore,":[91],"we":[92,143,150,176],"proposed":[93],"an":[94,165],"embedding":[95,173],"tool":[96,217],"called":[97],"PToC":[98,211],"characterize":[100],"disease,":[117],"represent":[119],"into":[122],"effect":[124,153,184],"vectors":[125,154],"from":[126],"two":[128],"aspects":[129],"network":[131,172],"topological":[132],"structure":[133],"biological":[135],"functional.":[136],"In":[137],"case":[139],"study":[140],"schizophrenia,":[142],"curated":[144],"First,":[149],"extracted":[151],"using":[155],"PToC,":[156],"applied":[158],"them":[159],"identify":[161],"achieved":[164],"average":[166,191],"AUC":[167,192],"17.90%":[168],"higher":[169],"than":[170,207],"other":[171],"methods.":[174,209],"Additionally,":[175],"constructed":[177],"sample":[179,200],"classifier":[180],"based":[181],"vectors.":[185],"Experimental":[186],"results":[187],"show":[188],"value":[193],"this":[195],"method":[196],"distinguishing":[198],"different":[199],"types":[201],"is":[202,205],"0.91,":[203],"which":[204],"better":[206],"existing":[208],"Thus,":[210],"offers":[212],"novel":[214],"perspective":[215],"analyzing":[219],"enhancing":[226],"disease":[227],"diagnosis":[228],"treatment.":[230]},"counts_by_year":[],"updated_date":"2025-12-22T23:10:17.713674","created_date":"2025-10-10T00:00:00"}
