{"id":"https://openalex.org/W4406260078","doi":"https://doi.org/10.1109/bibm62325.2024.10822156","title":"Comprehensive evaluation of haplotype phasing tools with different strategies across diverse sequence technologies","display_name":"Comprehensive evaluation of haplotype phasing tools with different strategies across diverse sequence technologies","publication_year":2024,"publication_date":"2024-12-03","ids":{"openalex":"https://openalex.org/W4406260078","doi":"https://doi.org/10.1109/bibm62325.2024.10822156"},"language":"en","primary_location":{"id":"doi:10.1109/bibm62325.2024.10822156","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822156","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101369002","display_name":"Zhongbo Yang","orcid":null},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhongbo Yang","raw_affiliation_strings":["Harbin Institute of Technology,Faculty of Computing,Harbin,China"],"affiliations":[{"raw_affiliation_string":"Harbin Institute of Technology,Faculty of Computing,Harbin,China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084269790","display_name":"Zhenhao Lu","orcid":"https://orcid.org/0009-0009-0990-558X"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenhao Lu","raw_affiliation_strings":["Harbin Institute of Technology,Faculty of Computing,Harbin,China"],"affiliations":[{"raw_affiliation_string":"Harbin Institute of Technology,Faculty of Computing,Harbin,China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100353758","display_name":"Xin Li","orcid":"https://orcid.org/0000-0001-8927-2149"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xin Li","raw_affiliation_strings":["Harbin Institute of Technology,Faculty of Computing,Harbin,China"],"affiliations":[{"raw_affiliation_string":"Harbin Institute of Technology,Faculty of Computing,Harbin,China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037643151","display_name":"Tao Jiang","orcid":"https://orcid.org/0000-0002-0673-8503"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Jiang","raw_affiliation_strings":["Harbin Institute of Technology,Faculty of Computing,Harbin,China"],"affiliations":[{"raw_affiliation_string":"Harbin Institute of Technology,Faculty of Computing,Harbin,China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100392447","display_name":"Yadong Wang","orcid":"https://orcid.org/0000-0001-6500-6217"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yadong Wang","raw_affiliation_strings":["Harbin Institute of Technology,Faculty of Computing,Harbin,China"],"affiliations":[{"raw_affiliation_string":"Harbin Institute of Technology,Faculty of Computing,Harbin,China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100613437","display_name":"Yadong Liu","orcid":"https://orcid.org/0000-0001-8385-1908"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yadong Liu","raw_affiliation_strings":["Harbin Institute of Technology,Faculty of Computing,Harbin,China"],"affiliations":[{"raw_affiliation_string":"Harbin Institute of Technology,Faculty of Computing,Harbin,China","institution_ids":["https://openalex.org/I204983213"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5101369002"],"corresponding_institution_ids":["https://openalex.org/I204983213"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.2206239,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"653","last_page":"658"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.980400025844574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.980400025844574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9779000282287598,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9578999876976013,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/haplotype","display_name":"Haplotype","score":0.7476557493209839},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.7105486392974854},{"id":"https://openalex.org/keywords/phaser","display_name":"Phaser","score":0.6840183734893799},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6323480010032654},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3876504898071289},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.2127959132194519},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.18239963054656982},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1694554090499878},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.06224438548088074}],"concepts":[{"id":"https://openalex.org/C197754878","wikidata":"https://www.wikidata.org/wiki/Q80711","display_name":"Haplotype","level":4,"score":0.7476557493209839},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.7105486392974854},{"id":"https://openalex.org/C135393689","wikidata":"https://www.wikidata.org/wiki/Q1551588","display_name":"Phaser","level":2,"score":0.6840183734893799},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6323480010032654},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3876504898071289},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.2127959132194519},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.18239963054656982},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1694554090499878},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.06224438548088074},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm62325.2024.10822156","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822156","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1596936080","https://openalex.org/W2108234281","https://openalex.org/W2119180969","https://openalex.org/W2122767081","https://openalex.org/W2291785861","https://openalex.org/W2529241974","https://openalex.org/W2560383108","https://openalex.org/W2779975541","https://openalex.org/W2796079887","https://openalex.org/W2952113787","https://openalex.org/W3047598142","https://openalex.org/W3159882286","https://openalex.org/W3164030673","https://openalex.org/W3196007724","https://openalex.org/W4294012180","https://openalex.org/W4313430580","https://openalex.org/W4322384960","https://openalex.org/W4382631675","https://openalex.org/W6674561012","https://openalex.org/W6729089956","https://openalex.org/W6786703444"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2163341755","https://openalex.org/W3146762847","https://openalex.org/W2398263405","https://openalex.org/W2146741998","https://openalex.org/W2056886854","https://openalex.org/W2025446304","https://openalex.org/W2166354960"],"abstract_inverted_index":{"Haplotype":[0],"phasing":[1,55,89,151],"is":[2,20],"a":[3,13,48,141],"computational":[4],"technique":[5],"used":[6],"to":[7,115,125,130],"determine":[8],"the":[9,96,148,155],"allelic":[10],"arrangement":[11],"in":[12,146,165],"chromosome":[14],"from":[15,137],"genotype":[16],"data.":[17],"This":[18],"process":[19],"crucial":[21],"for":[22,32,144],"understanding":[23],"genetic":[24,35,41,160,166],"diversity":[25],"and":[26,39,64,66,69,78,91,157,162],"inheritance":[27],"patterns,":[28],"which":[29],"are":[30,92],"essential":[31],"fields":[33],"like":[34],"research,":[36],"personalized":[37],"medicine,":[38],"population":[40],"studies.":[42],"In":[43,119],"this":[44,138],"study,":[45],"we":[46],"conducted":[47],"comprehensive":[49],"evaluation":[50],"of":[51,159],"five":[52],"state-of-the-art":[53],"haplotype":[54],"tools":[56,85,102,122],"under":[57],"different":[58],"strategies":[59],"including":[60,75],"statistical-based":[61,84,121],"Beagle5,":[62],"Eagle2":[63],"Shapeit5,":[65],"read-based":[67,101,132],"WhatsHap,":[68],"HapCut2,":[70],"across":[71],"various":[72],"sequencing":[73,97],"platforms":[74],"Illumina,":[76],"PacBio,":[77],"ONT.":[79],"Our":[80],"findings":[81],"indicate":[82],"that":[83],"generally":[86],"provide":[87,140],"better":[88],"continuity":[90],"less":[93,127],"dependent":[94],"on":[95],"technology":[98],"used,":[99],"whereas":[100],"offer":[103],"superior":[104],"performance":[105],"with":[106,111],"long-read":[107],"datasets":[108],"but":[109],"struggle":[110],"short":[112],"reads":[113],"due":[114],"insufficient":[116],"sequence":[117],"length.":[118],"addition,":[120],"were":[123],"found":[124],"be":[126],"resource-intensive":[128],"compared":[129],"their":[131],"counterparts.":[133],"The":[134],"insights":[135],"gained":[136],"benchmarking":[139],"valuable":[142],"guide":[143],"researchers":[145],"selecting":[147],"most":[149],"appropriate":[150],"tools,":[152],"potentially":[153],"enhancing":[154],"accuracy":[156],"efficiency":[158],"analysis":[161],"supporting":[163],"advancements":[164],"research":[167],"methodologies.":[168]},"counts_by_year":[],"updated_date":"2025-12-23T23:11:35.936235","created_date":"2025-10-10T00:00:00"}
