{"id":"https://openalex.org/W4406259608","doi":"https://doi.org/10.1109/bibm62325.2024.10822095","title":"Cell-Specific Highly Correlated Network for Self-Supervised Distillation in Cell Type Annotation","display_name":"Cell-Specific Highly Correlated Network for Self-Supervised Distillation in Cell Type Annotation","publication_year":2024,"publication_date":"2024-12-03","ids":{"openalex":"https://openalex.org/W4406259608","doi":"https://doi.org/10.1109/bibm62325.2024.10822095"},"language":"en","primary_location":{"id":"doi:10.1109/bibm62325.2024.10822095","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822095","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062784074","display_name":"Tianhao Li","orcid":"https://orcid.org/0009-0006-6362-3135"},"institutions":[{"id":"https://openalex.org/I24201400","display_name":"Chengdu University of Information Technology","ror":"https://ror.org/01yxwrh59","country_code":"CN","type":"education","lineage":["https://openalex.org/I24201400"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tianhao Li","raw_affiliation_strings":["Chengdu University of Information Technology,School of Computer Science,Chengdu,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chengdu University of Information Technology,School of Computer Science,Chengdu,China","institution_ids":["https://openalex.org/I24201400"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109962269","display_name":"Yugui Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I24201400","display_name":"Chengdu University of Information Technology","ror":"https://ror.org/01yxwrh59","country_code":"CN","type":"education","lineage":["https://openalex.org/I24201400"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yugui Xu","raw_affiliation_strings":["Chengdu University of Information Technology,School of Computer Science,Chengdu,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chengdu University of Information Technology,School of Computer Science,Chengdu,China","institution_ids":["https://openalex.org/I24201400"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113055760","display_name":"Sihan He","orcid":"https://orcid.org/0000-0002-7952-7387"},"institutions":[{"id":"https://openalex.org/I24201400","display_name":"Chengdu University of Information Technology","ror":"https://ror.org/01yxwrh59","country_code":"CN","type":"education","lineage":["https://openalex.org/I24201400"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sihan He","raw_affiliation_strings":["Chengdu University of Information Technology,School of Computer Science,Chengdu,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chengdu University of Information Technology,School of Computer Science,Chengdu,China","institution_ids":["https://openalex.org/I24201400"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100420960","display_name":"Yuhang Liu","orcid":"https://orcid.org/0000-0002-3445-0304"},"institutions":[{"id":"https://openalex.org/I24201400","display_name":"Chengdu University of Information Technology","ror":"https://ror.org/01yxwrh59","country_code":"CN","type":"education","lineage":["https://openalex.org/I24201400"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuhang Liu","raw_affiliation_strings":["Chengdu University of Information Technology,School of Computer Science,Chengdu,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chengdu University of Information Technology,School of Computer Science,Chengdu,China","institution_ids":["https://openalex.org/I24201400"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100398242","display_name":"Zixuan Wang","orcid":"https://orcid.org/0000-0002-0854-5895"},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zixuan Wang","raw_affiliation_strings":["Sichuan University,College of Electronics and Information Engineering,Chengdu,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sichuan University,College of Electronics and Information Engineering,Chengdu,China","institution_ids":["https://openalex.org/I24185976"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Zhigan Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I24201400","display_name":"Chengdu University of Information Technology","ror":"https://ror.org/01yxwrh59","country_code":"CN","type":"education","lineage":["https://openalex.org/I24201400"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhigan Zhou","raw_affiliation_strings":["Chengdu University of Information Technology,School of Computer Science,Chengdu,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chengdu University of Information Technology,School of Computer Science,Chengdu,China","institution_ids":["https://openalex.org/I24201400"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100741917","display_name":"Yongqing Zhang","orcid":"https://orcid.org/0000-0003-3422-8305"},"institutions":[{"id":"https://openalex.org/I24201400","display_name":"Chengdu University of Information Technology","ror":"https://ror.org/01yxwrh59","country_code":"CN","type":"education","lineage":["https://openalex.org/I24201400"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongqing Zhang","raw_affiliation_strings":["Chengdu University of Information Technology,School of Computer Science,Chengdu,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chengdu University of Information Technology,School of Computer Science,Chengdu,China","institution_ids":["https://openalex.org/I24201400"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017426085","display_name":"Quan Zou","orcid":"https://orcid.org/0000-0001-6406-1142"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Quan Zou","raw_affiliation_strings":["University of Electronic Science and Technology of China,Institute of Fundamental and Frontier Sciences,Chengdu,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Electronic Science and Technology of China,Institute of Fundamental and Frontier Sciences,Chengdu,China","institution_ids":["https://openalex.org/I150229711"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"988","last_page":"993"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10320","display_name":"Neural Networks and Applications","score":0.781499981880188,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10320","display_name":"Neural Networks and Applications","score":0.781499981880188,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12697","display_name":"Water Quality Monitoring Technologies","score":0.7540000081062317,"subfield":{"id":"https://openalex.org/subfields/2312","display_name":"Water Science and Technology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10820","display_name":"Fuzzy Logic and Control Systems","score":0.7469000220298767,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5790591835975647},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5706526637077332},{"id":"https://openalex.org/keywords/distillation","display_name":"Distillation","score":0.5548796653747559},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.5046614408493042},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43296200037002563},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2263926863670349},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.21950963139533997},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.08773985505104065}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5790591835975647},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5706526637077332},{"id":"https://openalex.org/C204030448","wikidata":"https://www.wikidata.org/wiki/Q101017","display_name":"Distillation","level":2,"score":0.5548796653747559},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.5046614408493042},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43296200037002563},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2263926863670349},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.21950963139533997},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.08773985505104065}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm62325.2024.10822095","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822095","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.6800000071525574,"id":"https://metadata.un.org/sdg/2"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320328111","display_name":"Chengdu University","ror":"https://ror.org/034z67559"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1580018887","https://openalex.org/W2413403124","https://openalex.org/W2908611543","https://openalex.org/W2931036699","https://openalex.org/W2949177718","https://openalex.org/W2995410603","https://openalex.org/W3114632476","https://openalex.org/W3144326055","https://openalex.org/W3203404644","https://openalex.org/W4297243391","https://openalex.org/W4323066405","https://openalex.org/W4361284397","https://openalex.org/W4366977935","https://openalex.org/W4377029825","https://openalex.org/W4385245566","https://openalex.org/W6779163297"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2361861616","https://openalex.org/W2263699433","https://openalex.org/W2377979023","https://openalex.org/W2218034408","https://openalex.org/W2392921965","https://openalex.org/W2358755282","https://openalex.org/W2625833328"],"abstract_inverted_index":{"Self-supervised":[0],"learning":[1,25,37,92],"has":[2],"succeeded":[3],"significantly":[4],"in":[5,143],"cell":[6,62,133,144,149],"type":[7,134,145],"annotation":[8,146],"based":[9],"on":[10],"transcriptomic":[11,17,58,74],"data.":[12],"However,":[13],"existing":[14],"methods":[15],"encode":[16],"data":[18,59,75],"as":[19],"gene":[20,28,64,120],"feature":[21,99,111],"representations,":[22],"limiting":[23],"self-supervised":[24,35,88],"to":[26,60,95,129],"the":[27,51,70,73,81,97,102,105,117,126,131],"level.":[29],"This":[30],"paper":[31],"proposes":[32],"a":[33,42,87],"novel":[34],"distillation":[36,91],"framework,":[38],"scTCHCN,":[39],"which":[40],"designs":[41],"cell-specific":[43,52,82],"highly":[44,53,83],"correlated":[45,54,84],"network.":[46,85],"Firstly,":[47],"this":[48,165],"framework":[49],"integrates":[50],"network":[55,71],"with":[56,90,125],"single-cell":[57,118],"extract":[61],"and":[63,72,113,119,147,161],"features.":[65],"ScTCHCN":[66],"promotes":[67],"interactions":[68],"between":[69,101],"features":[76],"during":[77],"pre-training":[78],"by":[79],"constructing":[80],"Additionally,":[86],"paradigm":[89],"is":[93],"proposed":[94],"enhance":[96],"global":[98],"correlation":[100],"two.":[103],"Ultimately,":[104],"pre-trained":[106],"student":[107],"model":[108],"aggregates":[109],"deep":[110],"constraints":[112],"complementary":[114],"information":[115,163],"at":[116,169],"levels.":[121],"It":[122],"combines":[123],"them":[124],"prediction":[127,135],"layer":[128],"construct":[130],"final":[132],"model.":[136],"Experimental":[137],"results":[138],"demonstrate":[139],"that":[140],"scTCHCN":[141],"excels":[142],"rare":[148],"identification":[150],"tasks,":[151],"showcasing":[152],"its":[153],"potential":[154],"for":[155,164],"other":[156],"applications.":[157],"The":[158],"source":[159],"code":[160],"additional":[162],"study":[166],"are":[167],"available":[168],"https://github.com/ZhangLab312/scTCHCN.":[170]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
