{"id":"https://openalex.org/W4406260381","doi":"https://doi.org/10.1109/bibm62325.2024.10822047","title":"Target-oriented Reference Construction for supervised cell type identification in scRNA-seq","display_name":"Target-oriented Reference Construction for supervised cell type identification in scRNA-seq","publication_year":2024,"publication_date":"2024-12-03","ids":{"openalex":"https://openalex.org/W4406260381","doi":"https://doi.org/10.1109/bibm62325.2024.10822047"},"language":"en","primary_location":{"id":"doi:10.1109/bibm62325.2024.10822047","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822047","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100316199","display_name":"Xin Wei","orcid":null},"institutions":[{"id":"https://openalex.org/I27804330","display_name":"Brown University","ror":"https://ror.org/05gq02987","country_code":"US","type":"education","lineage":["https://openalex.org/I27804330"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xin Wei","raw_affiliation_strings":["Brown University,Department of Biostatistics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Brown University,Department of Biostatistics","institution_ids":["https://openalex.org/I27804330"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085801402","display_name":"Wenjing Ma","orcid":"https://orcid.org/0000-0001-8757-651X"},"institutions":[{"id":"https://openalex.org/I27837315","display_name":"University of Michigan","ror":"https://ror.org/00jmfr291","country_code":"US","type":"education","lineage":["https://openalex.org/I27837315"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wenjing Ma","raw_affiliation_strings":["University of Michigan,Department of Biostatistics,Ann Arbor"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Michigan,Department of Biostatistics,Ann Arbor","institution_ids":["https://openalex.org/I27837315"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101770186","display_name":"Zhijin Wu","orcid":"https://orcid.org/0000-0002-9596-9134"},"institutions":[{"id":"https://openalex.org/I27804330","display_name":"Brown University","ror":"https://ror.org/05gq02987","country_code":"US","type":"education","lineage":["https://openalex.org/I27804330"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhijin Wu","raw_affiliation_strings":["Brown University,Department of Biostatistics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Brown University,Department of Biostatistics","institution_ids":["https://openalex.org/I27804330"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083170497","display_name":"Hao Wu","orcid":"https://orcid.org/0000-0003-1269-7354"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]},{"id":"https://openalex.org/I4210152380","display_name":"Shenzhen Technology University","ror":"https://ror.org/04qzpec27","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210152380"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hao Wu","raw_affiliation_strings":["Shenzhen University of Advanced Technology,Faculty of Computer Science and Control Engineering,Shenzhen,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shenzhen University of Advanced Technology,Faculty of Computer Science and Control Engineering,Shenzhen,China","institution_ids":["https://openalex.org/I180726961","https://openalex.org/I4210152380"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.31426301,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"643","last_page":"646"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9818999767303467,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9818999767303467,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9614999890327454,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9473000168800354,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.7843385934829712},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6266963481903076},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3926627039909363},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.062041789293289185}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.7843385934829712},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6266963481903076},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3926627039909363},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.062041789293289185},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm62325.2024.10822047","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10822047","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321133","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1498436455","https://openalex.org/W2774307122","https://openalex.org/W2951506174","https://openalex.org/W2964643116","https://openalex.org/W3015184839","https://openalex.org/W3048884493","https://openalex.org/W3121168830","https://openalex.org/W3128961456","https://openalex.org/W3132715010","https://openalex.org/W3153732845","https://openalex.org/W3198123874","https://openalex.org/W4388721931"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"Cell":[0],"type":[1,16,49,82,91,112],"identification":[2,17,50,113],"is":[3,19],"a":[4,20,67],"crucial":[5],"step":[6],"in":[7,78,89,110],"single-cell":[8],"RNA-seq":[9],"(scRNA-seq)":[10],"data":[11,105],"analysis.":[12],"The":[13,29],"supervised":[14,47,80],"cell":[15,48,81,90,111],"method":[18,53],"preferred":[21],"solution":[22],"due":[23],"to":[24],"its":[25],"accuracy":[26],"and":[27,96,103],"efficiency.":[28],"performance":[30],"of":[31,39],"such":[32],"methods":[33],"highly":[34],"depends":[35],"on":[36,75,86,101],"the":[37,40,94],"quality":[38],"reference":[41,58,95],"data.":[42,59],"Although":[43],"there":[44],"are":[45],"many":[46],"tools,":[51],"no":[52],"currently":[54],"exists":[55],"for":[56,71],"constructing":[57,72],"Here,":[60],"we":[61],"develop":[62],"Target-Oriented":[63],"Reference":[64],"Construction":[65],"(TORC),":[66],"widely":[68],"applicable":[69],"strategy":[70],"references":[73],"based":[74],"target":[76,97],"datasets":[77],"scRNA-seq":[79],"identification.":[83],"TORC":[84],"focuses":[85],"alleviating":[87],"differences":[88],"composition":[92],"between":[93],"sets.":[98],"Extensive":[99],"benchmarks":[100],"simulated":[102],"real":[104],"analyses":[106],"demonstrate":[107],"consistent":[108],"improvements":[109],"with":[114],"TORC.":[115]},"counts_by_year":[],"updated_date":"2026-07-31T08:31:51.225901","created_date":"2025-10-10T00:00:00"}
