{"id":"https://openalex.org/W4406260951","doi":"https://doi.org/10.1109/bibm62325.2024.10821949","title":"Optimizing Feature Selection for Unbalanced Metabolomics Data with A Background Factor: A Comparative Study in Parkinson\u2019s Disease","display_name":"Optimizing Feature Selection for Unbalanced Metabolomics Data with A Background Factor: A Comparative Study in Parkinson\u2019s Disease","publication_year":2024,"publication_date":"2024-12-03","ids":{"openalex":"https://openalex.org/W4406260951","doi":"https://doi.org/10.1109/bibm62325.2024.10821949"},"language":"en","primary_location":{"id":"doi:10.1109/bibm62325.2024.10821949","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10821949","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://research.aalto.fi/en/publications/ed6ad866-8744-4629-a486-4afc50ba5e15","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034853648","display_name":"Yinjia Zhang","orcid":"https://orcid.org/0000-0002-0158-6440"},"institutions":[{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Yinjia Zhang","raw_affiliation_strings":["Aalto University,School of Science,Department of Computer Science,Espoo,Finland"],"affiliations":[{"raw_affiliation_string":"Aalto University,School of Science,Department of Computer Science,Espoo,Finland","institution_ids":["https://openalex.org/I9927081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077299041","display_name":"Wilhelmiina H\u00e4m\u00e4l\u00e4inen","orcid":"https://orcid.org/0000-0002-3467-7509"},"institutions":[{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Wilhelmiina H\u00e4m\u00e4l\u00e4inen","raw_affiliation_strings":["Aalto University,School of Science,Department of Computer Science,Espoo,Finland"],"affiliations":[{"raw_affiliation_string":"Aalto University,School of Science,Department of Computer Science,Espoo,Finland","institution_ids":["https://openalex.org/I9927081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115840199","display_name":"Paavo Reinikka","orcid":null},"institutions":[{"id":"https://openalex.org/I9927081","display_name":"Aalto University","ror":"https://ror.org/020hwjq30","country_code":"FI","type":"education","lineage":["https://openalex.org/I9927081"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Paavo Reinikka","raw_affiliation_strings":["Aalto University,School of Science,Department of Computer Science,Espoo,Finland"],"affiliations":[{"raw_affiliation_string":"Aalto University,School of Science,Department of Computer Science,Espoo,Finland","institution_ids":["https://openalex.org/I9927081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108501180","display_name":"Sanna-Kaisa Herukka","orcid":null},"institutions":[{"id":"https://openalex.org/I4210092991","display_name":"Kuopio University Hospital","ror":"https://ror.org/00fqdfs68","country_code":"FI","type":"healthcare","lineage":["https://openalex.org/I4210092991"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Sanna-Kaisa Herukka","raw_affiliation_strings":["Kuopio University Hospital,Neurology of NeuroCenter,Kuopio,Finland"],"affiliations":[{"raw_affiliation_string":"Kuopio University Hospital,Neurology of NeuroCenter,Kuopio,Finland","institution_ids":["https://openalex.org/I4210092991"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041474733","display_name":"Ville Leinonen","orcid":"https://orcid.org/0000-0002-4282-4687"},"institutions":[{"id":"https://openalex.org/I4210092991","display_name":"Kuopio University Hospital","ror":"https://ror.org/00fqdfs68","country_code":"FI","type":"healthcare","lineage":["https://openalex.org/I4210092991"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Ville Leinonen","raw_affiliation_strings":["Kuopio University Hospital,Neurosurgery of NeuroCenter,Kuopio,Finland"],"affiliations":[{"raw_affiliation_string":"Kuopio University Hospital,Neurosurgery of NeuroCenter,Kuopio,Finland","institution_ids":["https://openalex.org/I4210092991"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081533533","display_name":"Marko Lehtonen","orcid":"https://orcid.org/0000-0002-5611-0466"},"institutions":[{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Marko Lehtonen","raw_affiliation_strings":["University of Eastern Finland,School of Pharmacy, Faculty of Health Science,Kuopio,Finland"],"affiliations":[{"raw_affiliation_string":"University of Eastern Finland,School of Pharmacy, Faculty of Health Science,Kuopio,Finland","institution_ids":["https://openalex.org/I175532246"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5076516068","display_name":"\u0160\u00e1rka Lehtonen","orcid":"https://orcid.org/0000-0002-5055-9414"},"institutions":[{"id":"https://openalex.org/I175532246","display_name":"University of Eastern Finland","ror":"https://ror.org/00cyydd11","country_code":"FI","type":"education","lineage":["https://openalex.org/I175532246"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"\u0160\u00e1rka Lehtonen","raw_affiliation_strings":["University of Eastern Finland,A. I. Virtanen Institute for Molecular Sciences,Kuopio,Finland"],"affiliations":[{"raw_affiliation_string":"University of Eastern Finland,A. I. Virtanen Institute for Molecular Sciences,Kuopio,Finland","institution_ids":["https://openalex.org/I175532246"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5034853648"],"corresponding_institution_ids":["https://openalex.org/I9927081"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.22088404,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"5884","last_page":"5891"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9700999855995178,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9700999855995178,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12647","display_name":"Traditional Chinese Medicine Studies","score":0.923799991607666,"subfield":{"id":"https://openalex.org/subfields/2707","display_name":"Complementary and alternative medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.7093647122383118},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6360008120536804},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.5403061509132385},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.49599871039390564},{"id":"https://openalex.org/keywords/parkinsons-disease","display_name":"Parkinson's disease","score":0.46283650398254395},{"id":"https://openalex.org/keywords/factor","display_name":"Factor (programming language)","score":0.4592210650444031},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.44756096601486206},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.441056489944458},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3409033417701721},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3363804519176483},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2398681640625},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.09491315484046936}],"concepts":[{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.7093647122383118},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6360008120536804},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.5403061509132385},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.49599871039390564},{"id":"https://openalex.org/C2779734285","wikidata":"https://www.wikidata.org/wiki/Q11085","display_name":"Parkinson's disease","level":3,"score":0.46283650398254395},{"id":"https://openalex.org/C2781039887","wikidata":"https://www.wikidata.org/wiki/Q1391724","display_name":"Factor (programming language)","level":2,"score":0.4592210650444031},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.44756096601486206},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.441056489944458},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3409033417701721},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3363804519176483},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2398681640625},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.09491315484046936},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibm62325.2024.10821949","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10821949","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmh:oai:aaltodoc.aalto.fi:123456789/134533","is_oa":true,"landing_page_url":"https://research.aalto.fi/en/publications/ed6ad866-8744-4629-a486-4afc50ba5e15","pdf_url":null,"source":{"id":"https://openalex.org/S4306401663","display_name":"Aaltodoc (Aalto University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I9927081","host_organization_name":"Aalto University","host_organization_lineage":["https://openalex.org/I9927081"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"acceptedVersion"}],"best_oa_location":{"id":"pmh:oai:aaltodoc.aalto.fi:123456789/134533","is_oa":true,"landing_page_url":"https://research.aalto.fi/en/publications/ed6ad866-8744-4629-a486-4afc50ba5e15","pdf_url":null,"source":{"id":"https://openalex.org/S4306401663","display_name":"Aaltodoc (Aalto University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I9927081","host_organization_name":"Aalto University","host_organization_lineage":["https://openalex.org/I9927081"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"acceptedVersion"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1596515083","https://openalex.org/W1979347720","https://openalex.org/W2002234191","https://openalex.org/W2045619021","https://openalex.org/W2059676361","https://openalex.org/W2146512944","https://openalex.org/W2744783701","https://openalex.org/W2819977475"],"related_works":["https://openalex.org/W2229271988","https://openalex.org/W438207291","https://openalex.org/W4205762803","https://openalex.org/W2274833306","https://openalex.org/W4401814285","https://openalex.org/W2552475978","https://openalex.org/W2535856026","https://openalex.org/W2265065644","https://openalex.org/W4386564352","https://openalex.org/W2952668426"],"abstract_inverted_index":{"Exploring":[0],"associations":[1],"between":[2],"molecular":[3],"features":[4],"and":[5,25,69,81,103,121],"categorical":[6],"factors,":[7],"like":[8],"disease":[9,53],"status,":[10],"is":[11,89],"a":[12,39,57],"crucial":[13],"task":[14],"in":[15],"metabolomics":[16,48,134],"data":[17,23,101],"analysis,":[18],"demanding":[19],"exceptional":[20],"rigor.":[21],"However,":[22],"imbalance":[24,102],"crossed":[26],"factorial":[27],"design":[28],"complicate":[29],"the":[30,108,131],"selection":[31],"of":[32,42,110,133],"appropriate":[33,127],"analysis":[34,44,87],"settings.":[35],"This":[36],"paper":[37],"presents":[38],"comparative":[40],"study":[41,61],"candidate":[43],"settings":[45,128],"for":[46,100,125],"unbalanced":[47],"data,":[49],"focusing":[50],"on":[51,115],"Parkinson\u2019s":[52],"with":[54,73],"gender":[55],"as":[56],"background":[58],"factor.":[59],"The":[60],"evaluates":[62],"two":[63,74],"statistical":[64],"test":[65],"methods,":[66],"pairwise":[67],"t-tests":[68],"2-way":[70],"ANOVA,":[71],"combined":[72],"multiple":[75],"hypothesis":[76],"correction":[77,80],"strategies:":[78],"global":[79],"two-stage":[82],"correction.":[83],"Additionally,":[84],"an":[85],"unconditional":[86],"setting":[88,112],"examined,":[90],"which":[91],"can":[92],"be":[93],"easily":[94],"misapplied":[95],"due":[96],"to":[97,129],"its":[98],"disregard":[99],"factor":[104],"interactions.":[105],"We":[106],"profile":[107],"characteristics":[109],"each":[111],"through":[113],"experiments":[114],"real-world":[116],"datasets":[117],"from":[118],"human":[119],"samples":[120],"provide":[122],"practical":[123],"guidance":[124],"selecting":[126],"enhance":[130],"reliability":[132],"studies.":[135]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
