{"id":"https://openalex.org/W4406260709","doi":"https://doi.org/10.1109/bibm62325.2024.10821846","title":"Uncertainty Quantification and Statistical Inference for Biologically Informed Neural Networks","display_name":"Uncertainty Quantification and Statistical Inference for Biologically Informed Neural Networks","publication_year":2024,"publication_date":"2024-12-03","ids":{"openalex":"https://openalex.org/W4406260709","doi":"https://doi.org/10.1109/bibm62325.2024.10821846"},"language":"en","primary_location":{"id":"doi:10.1109/bibm62325.2024.10821846","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10821846","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082932776","display_name":"Taewan Goo","orcid":"https://orcid.org/0000-0001-9427-2290"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Taewan Goo","raw_affiliation_strings":["Seoul National University,Interdisciplinary Program in Bioinformatics,Seoul,Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Seoul National University,Interdisciplinary Program in Bioinformatics,Seoul,Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100673636","display_name":"Chanhee Lee","orcid":"https://orcid.org/0000-0001-9643-7159"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Chanhee Lee","raw_affiliation_strings":["Seoul National University,Interdisciplinary Program in Bioinformatics,Seoul,Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Seoul National University,Interdisciplinary Program in Bioinformatics,Seoul,Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Sangyeon Shin","orcid":null},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Sangyeon Shin","raw_affiliation_strings":["Seoul National University,Interdisciplinary Program in Bioinformatics,Seoul,Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Seoul National University,Interdisciplinary Program in Bioinformatics,Seoul,Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103275917","display_name":"Haeyoung Kim","orcid":"https://orcid.org/0000-0003-2739-206X"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Haeyoung Kim","raw_affiliation_strings":["Seoul National University,Interdisciplinary Program in Bioinformatics,Seoul,Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Seoul National University,Interdisciplinary Program in Bioinformatics,Seoul,Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108621611","display_name":"Taesung Park","orcid":null},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Taesung Park","raw_affiliation_strings":["Seoul National University,Department of Statistics,Seoul,Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Seoul National University,Department of Statistics,Seoul,Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I139264467"],"apc_list":null,"apc_paid":null,"fwci":0.3556,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.60849533,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"4423","last_page":"4428"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10320","display_name":"Neural Networks and Applications","score":0.7409999966621399,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10320","display_name":"Neural Networks and Applications","score":0.7409999966621399,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/statistical-inference","display_name":"Statistical inference","score":0.6780613660812378},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6568652987480164},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6457362174987793},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5045377016067505},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5041338205337524},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4329929053783417},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.18247175216674805},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.16821801662445068}],"concepts":[{"id":"https://openalex.org/C134261354","wikidata":"https://www.wikidata.org/wiki/Q938438","display_name":"Statistical inference","level":2,"score":0.6780613660812378},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6568652987480164},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6457362174987793},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5045377016067505},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5041338205337524},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4329929053783417},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.18247175216674805},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.16821801662445068}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm62325.2024.10821846","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10821846","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320311687","display_name":"Ministry of Education","ror":"https://ror.org/03m01yf64"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1969676039","https://openalex.org/W2790179710","https://openalex.org/W2904422658","https://openalex.org/W2908201961","https://openalex.org/W2927351257","https://openalex.org/W2945976633","https://openalex.org/W2951934944","https://openalex.org/W3118929067","https://openalex.org/W3174752098","https://openalex.org/W3199772305","https://openalex.org/W4391098159","https://openalex.org/W4392393059","https://openalex.org/W4392471793","https://openalex.org/W6736518430","https://openalex.org/W6737947904","https://openalex.org/W6801426889","https://openalex.org/W6806909291"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W4387369504","https://openalex.org/W3046775127","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W137830373","https://openalex.org/W3107602296","https://openalex.org/W4364306694"],"abstract_inverted_index":{"In":[0],"precision":[1],"medicine,":[2],"deep":[3,41],"learning":[4,42],"models":[5,31,82],"play":[6],"an":[7],"important":[8],"role":[9],"in":[10,27,155],"identifying":[11],"relevant":[12],"biomarkers":[13],"and":[14,21,34,69,92,164,171],"making":[15],"predictions":[16],"for":[17,32,78],"the":[18,36,65,113,146,151,169],"early":[19],"diagnosis":[20],"prognosis":[22,33],"of":[23,40,106,115,124,139,153,162,173],"diseases.":[24],"While":[25],"successful":[26],"developing":[28],"accurate":[29],"prediction":[30],"diagnosis,":[35],"\u2018black":[37],"box\u2019":[38],"nature":[39],"poses":[43],"significant":[44],"challenges,":[45],"which":[46],"makes":[47],"it":[48],"difficult":[49],"to":[50,74,121,135],"have":[51,71,97],"a":[52,103,128],"meaningful":[53],"biological":[54,76],"interpretation.":[55,80],"Recently,":[56],"several":[57],"biologically":[58],"informed":[59],"neural":[60],"networks":[61],"(BINNs),":[62],"such":[63,89],"as":[64,90],"Visible":[66],"Neural":[67],"Network":[68],"P-NET,":[70],"been":[72],"proposed":[73,147],"incorporate":[75],"knowledge":[77],"improved":[79],"These":[81],"assess":[83,122],"node":[84,107,125,140],"importance":[85,108,126],"using":[86],"quantitative":[87],"measures":[88],"SHAP":[91],"DeepLIFT.":[93],"However,":[94],"these":[95,116],"approaches":[96],"limitations":[98],"because":[99],"they":[100],"typically":[101],"provide":[102],"single":[104],"estimate":[105],"without":[109],"any":[110],"information":[111],"on":[112],"uncertainty":[114,123,152],"estimates.":[117],"This":[118],"study":[119],"aims":[120],"through":[127],"novel":[129],"statistical":[130,148],"framework.":[131],"Bootstrapping":[132],"is":[133],"used":[134],"calculate":[136],"confidence":[137,160],"interval":[138],"importance.":[141],"Our":[142],"findings":[143],"validate":[144],"that":[145],"framework":[149,167],"quantifies":[150],"nodes":[154],"BINNs.":[156,174],"By":[157],"providing":[158],"robust":[159],"intervals":[161],"pathways":[163],"genes,":[165],"this":[166],"enhances":[168],"interpretability":[170],"reliability":[172]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
