{"id":"https://openalex.org/W4406259538","doi":"https://doi.org/10.1109/bibm62325.2024.10821809","title":"DCUI-MGraphDTA: Enabling Efficient Inference of a Drug-Target Binding Affinity Prediction Model on DCUs","display_name":"DCUI-MGraphDTA: Enabling Efficient Inference of a Drug-Target Binding Affinity Prediction Model on DCUs","publication_year":2024,"publication_date":"2024-12-03","ids":{"openalex":"https://openalex.org/W4406259538","doi":"https://doi.org/10.1109/bibm62325.2024.10821809"},"language":"en","primary_location":{"id":"doi:10.1109/bibm62325.2024.10821809","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10821809","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006420025","display_name":"Tao Song","orcid":"https://orcid.org/0000-0002-0130-3340"},"institutions":[{"id":"https://openalex.org/I4210128818","display_name":"Institute of Software","ror":"https://ror.org/033dfsn42","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210128818"]},{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tao Song","raw_affiliation_strings":["Qingdao Institute of Software, China University of Petroleum,College of Computer Science and Technology,Qingdao,China,266580"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Qingdao Institute of Software, China University of Petroleum,College of Computer Science and Technology,Qingdao,China,266580","institution_ids":["https://openalex.org/I4210128818","https://openalex.org/I4210162190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100347388","display_name":"Siyu Zhang","orcid":"https://orcid.org/0000-0003-4954-9515"},"institutions":[{"id":"https://openalex.org/I4210128818","display_name":"Institute of Software","ror":"https://ror.org/033dfsn42","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210128818"]},{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Siyu Zhang","raw_affiliation_strings":["Qingdao Institute of Software, China University of Petroleum,College of Computer Science and Technology,Qingdao,China,266580"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Qingdao Institute of Software, China University of Petroleum,College of Computer Science and Technology,Qingdao,China,266580","institution_ids":["https://openalex.org/I4210128818","https://openalex.org/I4210162190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102958618","display_name":"Xiangyu Meng","orcid":"https://orcid.org/0009-0004-5958-7552"},"institutions":[{"id":"https://openalex.org/I4210128818","display_name":"Institute of Software","ror":"https://ror.org/033dfsn42","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210128818"]},{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangyu Meng","raw_affiliation_strings":["Qingdao Institute of Software, China University of Petroleum,College of Computer Science and Technology,Qingdao,China,266580"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Qingdao Institute of Software, China University of Petroleum,College of Computer Science and Technology,Qingdao,China,266580","institution_ids":["https://openalex.org/I4210128818","https://openalex.org/I4210162190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062006761","display_name":"Zeyang Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210128818","display_name":"Institute of Software","ror":"https://ror.org/033dfsn42","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210128818"]},{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zeyang Zhu","raw_affiliation_strings":["Qingdao Institute of Software, China University of Petroleum,College of Computer Science and Technology,Qingdao,China,266580"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Qingdao Institute of Software, China University of Petroleum,College of Computer Science and Technology,Qingdao,China,266580","institution_ids":["https://openalex.org/I4210128818","https://openalex.org/I4210162190"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Xianxi Zhu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210128818","display_name":"Institute of Software","ror":"https://ror.org/033dfsn42","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210128818"]},{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xianxi Zhu","raw_affiliation_strings":["Qingdao Institute of Software, China University of Petroleum,College of Computer Science and Technology,Qingdao,China,266580"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Qingdao Institute of Software, China University of Petroleum,College of Computer Science and Technology,Qingdao,China,266580","institution_ids":["https://openalex.org/I4210128818","https://openalex.org/I4210162190"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100333854","display_name":"Xun Wang","orcid":"https://orcid.org/0000-0002-2741-433X"},"institutions":[{"id":"https://openalex.org/I4210128818","display_name":"Institute of Software","ror":"https://ror.org/033dfsn42","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210128818"]},{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xun Wang","raw_affiliation_strings":["Qingdao Institute of Software, China University of Petroleum,College of Computer Science and Technology,Qingdao,China,266580"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Qingdao Institute of Software, China University of Petroleum,College of Computer Science and Technology,Qingdao,China,266580","institution_ids":["https://openalex.org/I4210128818","https://openalex.org/I4210162190"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.28242318,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1655","last_page":"1660"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9710999727249146,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9474999904632568,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5702418088912964},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5148112177848816},{"id":"https://openalex.org/keywords/drug-target","display_name":"Drug target","score":0.4655632972717285},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44458431005477905},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.43934375047683716},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3514671325683594},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1805327832698822},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.13516640663146973}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5702418088912964},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5148112177848816},{"id":"https://openalex.org/C2989108626","wikidata":"https://www.wikidata.org/wiki/Q904407","display_name":"Drug target","level":2,"score":0.4655632972717285},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44458431005477905},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.43934375047683716},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3514671325683594},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1805327832698822},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.13516640663146973}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm62325.2024.10821809","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10821809","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320324174","display_name":"Natural Science Foundation of Shandong Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W1972987731","https://openalex.org/W2003281617","https://openalex.org/W2052030759","https://openalex.org/W2085732173","https://openalex.org/W2112937261","https://openalex.org/W2134967712","https://openalex.org/W2140239055","https://openalex.org/W2145962544","https://openalex.org/W2783902357","https://openalex.org/W2785947426","https://openalex.org/W3010016408","https://openalex.org/W3019745511","https://openalex.org/W3094640617","https://openalex.org/W3111182779","https://openalex.org/W3115142961","https://openalex.org/W3157476473","https://openalex.org/W4205167309","https://openalex.org/W4206016367","https://openalex.org/W4220837717","https://openalex.org/W4229701516","https://openalex.org/W4289821392","https://openalex.org/W4309452766","https://openalex.org/W4313452913","https://openalex.org/W4385194941","https://openalex.org/W4385245566","https://openalex.org/W4386898749","https://openalex.org/W6794416842"],"related_works":["https://openalex.org/W2055243143","https://openalex.org/W4206379684","https://openalex.org/W1986418932","https://openalex.org/W4390443207","https://openalex.org/W2038043644","https://openalex.org/W4391636780","https://openalex.org/W2409508359","https://openalex.org/W3002327824","https://openalex.org/W1487182515","https://openalex.org/W3157751976"],"abstract_inverted_index":{"Efficient":[0],"and":[1,18,34,62],"accurate":[2,35],"identification":[3],"of":[4,15,21,42,77,85,90,113,124,140,156,179],"drug-target":[5],"affinity":[6,37,105],"(DTA)":[7],"is":[8,40],"crucial":[9],"in":[10],"the":[11,19,43,66,83,127,150,154,163,167],"virtual":[12,92,120],"screening":[13,93,121],"stage":[14],"drug":[16,86],"discovery":[17],"reuse":[20],"existing":[22],"drugs.":[23],"Deep":[24,128],"neural":[25,54,69],"networks":[26,70],"are":[27],"becoming":[28],"popular":[29],"tools":[30],"for":[31,47,122,166],"providing":[32],"fast":[33],"binding":[36,104],"prediction.":[38],"MGraphDTA":[39,116],"one":[41],"best":[44],"performing":[45],"models":[46],"DTA":[48],"prediction,":[49],"utilizing":[50],"a":[51,73,111,138,145,177],"super-deep":[52],"graph":[53],"network":[55],"to":[56,82,117,149,161,169],"extract":[57],"features,":[58],"demonstrating":[59],"good":[60],"generalization":[61],"interpretation":[63],"capabilities.":[64],"However,":[65],"complex":[67],"deep":[68],"come":[71],"with":[72],"higher":[74],"computational":[75],"cost":[76],"model":[78,136,168],"inference.":[79],"Meanwhile,":[80],"due":[81],"expansion":[84],"databases,":[87],"rapid":[88],"completion":[89],"large-scale":[91,119],"still":[94],"presents":[95],"challenges.":[96],"In":[97],"this":[98],"work,":[99],"we":[100],"propose":[101],"an":[102],"efficient":[103],"prediction":[106],"method":[107],"called":[108],"DCUI-MGraphDTA":[109,135],"through":[110],"series":[112],"optimizations":[114],"on":[115,126,144],"achieve":[118],"millions":[123],"molecules":[125],"Computing":[129],"Unit":[130],"(DCU)":[131],"cluster.":[132],"The":[133],"optimized":[134],"achieves":[137],"speedup":[139,178],"approximately":[141,180],"5.83":[142],"times":[143],"single":[146],"DCU":[147],"compared":[148],"original":[151],"MGraphDTA.":[152],"As":[153],"number":[155],"DCUs":[157],"expands":[158],"from":[159],"1":[160],"32,":[162],"total":[164],"time":[165],"process":[170],"1.28":[171],"million":[172],"data":[173],"significantly":[174],"decreases,":[175],"achieving":[176],"11.9":[181],"times.":[182]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
