{"id":"https://openalex.org/W4406259714","doi":"https://doi.org/10.1109/bibm62325.2024.10821783","title":"Selecting interpretable features for cancer subtyping on multi-omics data","display_name":"Selecting interpretable features for cancer subtyping on multi-omics data","publication_year":2024,"publication_date":"2024-12-03","ids":{"openalex":"https://openalex.org/W4406259714","doi":"https://doi.org/10.1109/bibm62325.2024.10821783"},"language":"en","primary_location":{"id":"doi:10.1109/bibm62325.2024.10821783","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10821783","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5019167805","display_name":"Tianyi Shi","orcid":"https://orcid.org/0000-0002-9204-9949"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tianyi Shi","raw_affiliation_strings":["University of Tsukuba,Department of Computer Science,Tsukuba,Japan,3058577"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Tsukuba,Department of Computer Science,Tsukuba,Japan,3058577","institution_ids":["https://openalex.org/I146399215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063256241","display_name":"Xiucai Ye","orcid":"https://orcid.org/0000-0002-5547-3919"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Xiucai Ye","raw_affiliation_strings":["University of Tsukuba,Department of Computer Science,Tsukuba,Japan,3058577"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Tsukuba,Department of Computer Science,Tsukuba,Japan,3058577","institution_ids":["https://openalex.org/I146399215"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050270789","display_name":"Dong Huang","orcid":"https://orcid.org/0000-0003-3923-8828"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Dong Huang","raw_affiliation_strings":["University of Tsukuba,Department of Computer Science,Tsukuba,Japan,3058577"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Tsukuba,Department of Computer Science,Tsukuba,Japan,3058577","institution_ids":["https://openalex.org/I146399215"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038336830","display_name":"Tetsuya Sakurai","orcid":"https://orcid.org/0000-0002-5789-7547"},"institutions":[{"id":"https://openalex.org/I146399215","display_name":"University of Tsukuba","ror":"https://ror.org/02956yf07","country_code":"JP","type":"education","lineage":["https://openalex.org/I146399215"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tetsuya Sakurai","raw_affiliation_strings":["University of Tsukuba,Department of Computer Science,Tsukuba,Japan,3058577"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Tsukuba,Department of Computer Science,Tsukuba,Japan,3058577","institution_ids":["https://openalex.org/I146399215"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I146399215"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1155","last_page":"1160"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9918000102043152,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.987500011920929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9171000123023987,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subtyping","display_name":"Subtyping","score":0.9318199157714844},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6349614262580872},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35965514183044434},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34670180082321167},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3368368148803711},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1707674264907837},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14373788237571716}],"concepts":[{"id":"https://openalex.org/C83852419","wikidata":"https://www.wikidata.org/wiki/Q2713292","display_name":"Subtyping","level":2,"score":0.9318199157714844},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6349614262580872},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35965514183044434},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34670180082321167},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3368368148803711},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1707674264907837},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14373788237571716}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm62325.2024.10821783","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10821783","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4425502495","display_name":"\u5236\u7d04\u4ed8\u304d\u56fa\u6709\u5024\u554f\u984c\u306b\u57fa\u3065\u304f\u5c40\u6240\u6f5c\u5728\u7a7a\u9593\u751f\u6210\u3068\u305d\u306e\u5927\u898f\u6a21\u5206\u6563\u30c7\u30fc\u30bf\u89e3\u6790\u3078\u306e\u5fdc\u7528","funder_award_id":"23K28101","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"}],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W56226576","https://openalex.org/W223385549","https://openalex.org/W1510833811","https://openalex.org/W1987219048","https://openalex.org/W2025183726","https://openalex.org/W2043398720","https://openalex.org/W2053186076","https://openalex.org/W2118527670","https://openalex.org/W2128728535","https://openalex.org/W2132914434","https://openalex.org/W2146512944","https://openalex.org/W2342032814","https://openalex.org/W2559950083","https://openalex.org/W2626481916","https://openalex.org/W2884724578","https://openalex.org/W2950878899","https://openalex.org/W2972689486","https://openalex.org/W3081135305","https://openalex.org/W3131576176","https://openalex.org/W4306956432","https://openalex.org/W4320913285","https://openalex.org/W4382940684","https://openalex.org/W4384207011","https://openalex.org/W4390992201","https://openalex.org/W4399647672","https://openalex.org/W4402787896","https://openalex.org/W6682644385","https://openalex.org/W6699529502","https://openalex.org/W6748281036"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2396009657","https://openalex.org/W2799110842","https://openalex.org/W3032826521","https://openalex.org/W2391332606","https://openalex.org/W4229853287","https://openalex.org/W1462775415","https://openalex.org/W2008549446"],"abstract_inverted_index":{"Analyzing":[0],"multi-omics":[1,24,37,58,170],"data":[2,30,69],"is":[3,32,89,135],"powerful":[4],"in":[5,23,169],"cancer":[6,14,147,174],"research,":[7],"offering":[8],"essential":[9],"insights":[10],"for":[11,111,173],"identifying":[12],"distinct":[13],"subtypes.":[15],"Due":[16],"to":[17,47,80,92,125,137,154],"the":[18,94,104,116,127,139,156,162],"significant":[19],"noise":[20],"and":[21,77,101,119],"redundancy":[22],"data,":[25],"effective":[26],"feature":[27],"extraction":[28],"before":[29,68],"integration":[31],"crucial.":[33],"However,":[34],"most":[35,95],"existing":[36],"clustering":[38,49,59,134,140,171],"methods":[39],"directly":[40],"integrate":[41,126],"different":[42,66,85,130],"omics,":[43],"which":[44,61],"may":[45],"lead":[46],"poor":[48],"results.":[50],"In":[51],"this":[52],"study,":[53],"we":[54],"propose":[55],"a":[56],"novel":[57],"method":[60,73,168],"selects":[62],"interpretable":[63,82,97],"features":[64,83,98],"from":[65,84],"omics":[67,113,153],"integration.":[70],"The":[71],"proposed":[72,157,167],"utilizes":[74],"clinical":[75],"information":[76],"SHAP":[78,105],"values":[79],"extract":[81],"omics.":[86,131],"Feature":[87],"selection":[88],"then":[90,120],"performed":[91],"select":[93],"important":[96],"by":[99],"grouping":[100],"ranking":[102],"on":[103,115,145],"values.":[106],"We":[107,142],"construct":[108],"similarity":[109,122],"network":[110,123],"each":[112],"based":[114],"selected":[117],"features,":[118],"perform":[121],"fusion":[124],"similarities":[128],"across":[129,149],"Finally,":[132],"spectral":[133],"applied":[136],"obtain":[138],"result.":[141],"conduct":[143],"experiments":[144],"five":[146],"datasets":[148],"three":[150],"levels":[151],"of":[152,165],"evaluate":[155],"method.":[158],"Experimental":[159],"results":[160],"demonstrate":[161],"superior":[163],"performance":[164],"our":[166],"analysis":[172],"subtyping.":[175]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
