{"id":"https://openalex.org/W4406259535","doi":"https://doi.org/10.1109/bibm62325.2024.10821762","title":"Not Just Single Reasoning! A Hierarchical Network for Document-level Biomedical Relation Extraction with Multi-Granularity Learning","display_name":"Not Just Single Reasoning! A Hierarchical Network for Document-level Biomedical Relation Extraction with Multi-Granularity Learning","publication_year":2024,"publication_date":"2024-12-03","ids":{"openalex":"https://openalex.org/W4406259535","doi":"https://doi.org/10.1109/bibm62325.2024.10821762"},"language":"en","primary_location":{"id":"doi:10.1109/bibm62325.2024.10821762","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10821762","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100651764","display_name":"Fengyu Zhang","orcid":"https://orcid.org/0000-0002-9372-1362"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fengyu Zhang","raw_affiliation_strings":["Dalian Maritime University,School of Information Science and Technology,Dalian,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian Maritime University,School of Information Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101242220","display_name":"Jianyuan Yuan","orcid":null},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianyuan Yuan","raw_affiliation_strings":["Dalian Maritime University,School of Information Science and Technology,Dalian,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian Maritime University,School of Information Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111237995","display_name":"Yimeng Qiu","orcid":null},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yimeng Qiu","raw_affiliation_strings":["Dalian Maritime University,School of Information Science and Technology,Dalian,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian Maritime University,School of Information Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I43313876"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023931221","display_name":"Hongfei Lin","orcid":"https://orcid.org/0000-0003-0872-7688"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongfei Lin","raw_affiliation_strings":["Dalian University of Technology,School of Computer Science and Technology,Dalian,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,School of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046020427","display_name":"Yijia Zhang","orcid":"https://orcid.org/0000-0002-5843-4675"},"institutions":[{"id":"https://openalex.org/I43313876","display_name":"Dalian Maritime University","ror":"https://ror.org/002b7nr53","country_code":"CN","type":"education","lineage":["https://openalex.org/I43313876"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yijia Zhang","raw_affiliation_strings":["Dalian Maritime University,School of Information Science and Technology,Dalian,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian Maritime University,School of Information Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I43313876"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1744","last_page":"1747"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9783999919891357,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9584000110626221,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/granularity","display_name":"Granularity","score":0.8678361177444458},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7264472246170044},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.642353355884552},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.5328429341316223},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5073994994163513},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2393450140953064},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.06215706467628479}],"concepts":[{"id":"https://openalex.org/C177774035","wikidata":"https://www.wikidata.org/wiki/Q1246948","display_name":"Granularity","level":2,"score":0.8678361177444458},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7264472246170044},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.642353355884552},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.5328429341316223},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5073994994163513},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2393450140953064},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.06215706467628479}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm62325.2024.10821762","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm62325.2024.10821762","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1985817649","https://openalex.org/W2346452181","https://openalex.org/W2560023338","https://openalex.org/W2604314403","https://openalex.org/W2911489562","https://openalex.org/W2920198243","https://openalex.org/W2962859618","https://openalex.org/W3093891978","https://openalex.org/W3173229273","https://openalex.org/W3188999884","https://openalex.org/W3204348602","https://openalex.org/W4205983734","https://openalex.org/W4386824989","https://openalex.org/W4399995666","https://openalex.org/W6842806116"],"related_works":["https://openalex.org/W2976808399","https://openalex.org/W2609844752","https://openalex.org/W4392969631","https://openalex.org/W4285246823","https://openalex.org/W4226278302","https://openalex.org/W4221160509","https://openalex.org/W2547211086","https://openalex.org/W2538200646","https://openalex.org/W1968988659","https://openalex.org/W2888033806"],"abstract_inverted_index":{"Document-level":[0],"biomedical":[1,15,140],"relation":[2,28,57,81],"extraction":[3],"(Bio-DocRE)":[4],"involves":[5],"identifying":[6],"relations":[7],"between":[8],"entities":[9],"distributed":[10],"across":[11],"multiple":[12],"sentences":[13],"in":[14,66,91],"literature.":[16],"Most":[17],"existing":[18],"approaches":[19,74],"construct":[20],"a":[21,121],"document":[22,89],"graph":[23],"structure":[24],"to":[25],"model":[26,145],"entity-level":[27,56],"maps":[29],"and":[30,59,102,129],"achieve":[31,76],"local":[32,77],"implicit":[33],"reasoning":[34,61,78,101,130],"at":[35],"the":[36,47,70,84,92,106,111],"entity-pair":[37],"granularity.":[38],"However,":[39],"these":[40,73,117],"methods":[41],"have":[42],"two":[43,137],"main":[44],"drawbacks.":[45],"On":[46,69],"one":[48],"hand,":[49,72],"mention-pair":[50],"granularity":[51],"is":[52,63],"crucial":[53],"for":[54,132],"modeling":[55,99],"map":[58],"global":[60,100],"but":[62],"often":[64],"ignored":[65],"most":[67],"approaches.":[68],"other":[71],"primarily":[75],"of":[79,86],"cross-sentence":[80],"instances":[82],"with":[83],"interaction":[85],"sentence":[87],"or":[88],"nodes":[90],"graph.":[93],"Such":[94],"an":[95],"approach":[96],"has":[97],"difficulty":[98],"cannot":[103],"completely":[104],"address":[105],"sub-optimal":[107],"performance":[108],"caused":[109],"by":[110],"long":[112],"dependency":[113],"issue.":[114],"To":[115],"tackle":[116],"issues,":[118],"we":[119],"propose":[120],"novel":[122],"framework":[123],"based":[124],"on":[125,136],"hierarchical":[126],"multi-granularity":[127],"learning":[128],"(HMGLR)":[131],"Bio-DocRE.":[133],"Experimental":[134],"results":[135],"widely":[138],"used":[139],"datasets":[141],"demonstrate":[142],"that":[143],"our":[144],"achieves":[146],"new":[147],"state-of-the-art":[148],"performance.":[149]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-01-11T00:00:00"}
