{"id":"https://openalex.org/W4390970477","doi":"https://doi.org/10.1109/bibm58861.2023.10386052","title":"Prediction of piRNA-mRNA interactions based on an interactive inference network","display_name":"Prediction of piRNA-mRNA interactions based on an interactive inference network","publication_year":2023,"publication_date":"2023-12-05","ids":{"openalex":"https://openalex.org/W4390970477","doi":"https://doi.org/10.1109/bibm58861.2023.10386052"},"language":"en","primary_location":{"id":"doi:10.1109/bibm58861.2023.10386052","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10386052","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100449874","display_name":"Yajun Liu","orcid":"https://orcid.org/0000-0002-5113-4709"},"institutions":[{"id":"https://openalex.org/I4210131919","display_name":"Xi'an University of Technology","ror":"https://ror.org/038avdt50","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210131919"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yajun Liu","raw_affiliation_strings":["Xi'an University of Technology,Shaanxi Key Laboratory for Network Computing and Security Technology,Xi'an,China","Shaanxi Key Laboratory for Network Computing and Security Technology, Xi'an University of Technology, Xi'an, China"],"affiliations":[{"raw_affiliation_string":"Xi'an University of Technology,Shaanxi Key Laboratory for Network Computing and Security Technology,Xi'an,China","institution_ids":["https://openalex.org/I4210131919"]},{"raw_affiliation_string":"Shaanxi Key Laboratory for Network Computing and Security Technology, Xi'an University of Technology, Xi'an, China","institution_ids":["https://openalex.org/I4210131919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102751222","display_name":"Ru Li","orcid":"https://orcid.org/0000-0001-6660-5633"},"institutions":[{"id":"https://openalex.org/I4210131919","display_name":"Xi'an University of Technology","ror":"https://ror.org/038avdt50","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210131919"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ru Li","raw_affiliation_strings":["Xi'an University of Technology,Shaanxi Key Laboratory for Network Computing and Security Technology,Xi'an,China","Shaanxi Key Laboratory for Network Computing and Security Technology, Xi'an University of Technology, Xi'an, China"],"affiliations":[{"raw_affiliation_string":"Xi'an University of Technology,Shaanxi Key Laboratory for Network Computing and Security Technology,Xi'an,China","institution_ids":["https://openalex.org/I4210131919"]},{"raw_affiliation_string":"Shaanxi Key Laboratory for Network Computing and Security Technology, Xi'an University of Technology, Xi'an, China","institution_ids":["https://openalex.org/I4210131919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100382838","display_name":"Aimin Li","orcid":"https://orcid.org/0000-0002-6983-2310"},"institutions":[{"id":"https://openalex.org/I4210131919","display_name":"Xi'an University of Technology","ror":"https://ror.org/038avdt50","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210131919"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Aimin Li","raw_affiliation_strings":["Xi'an University of Technology,Shaanxi Key Laboratory for Network Computing and Security Technology,Xi'an,China","Shaanxi Key Laboratory for Network Computing and Security Technology, Xi'an University of Technology, Xi'an, China"],"affiliations":[{"raw_affiliation_string":"Xi'an University of Technology,Shaanxi Key Laboratory for Network Computing and Security Technology,Xi'an,China","institution_ids":["https://openalex.org/I4210131919"]},{"raw_affiliation_string":"Shaanxi Key Laboratory for Network Computing and Security Technology, Xi'an University of Technology, Xi'an, China","institution_ids":["https://openalex.org/I4210131919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010752811","display_name":"Rong Fei","orcid":"https://orcid.org/0000-0003-1892-8192"},"institutions":[{"id":"https://openalex.org/I4210131919","display_name":"Xi'an University of Technology","ror":"https://ror.org/038avdt50","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210131919"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rong Fei","raw_affiliation_strings":["Xi'an University of Technology,Shaanxi Key Laboratory for Network Computing and Security Technology,Xi'an,China","Shaanxi Key Laboratory for Network Computing and Security Technology, Xi'an University of Technology, Xi'an, China"],"affiliations":[{"raw_affiliation_string":"Xi'an University of Technology,Shaanxi Key Laboratory for Network Computing and Security Technology,Xi'an,China","institution_ids":["https://openalex.org/I4210131919"]},{"raw_affiliation_string":"Shaanxi Key Laboratory for Network Computing and Security Technology, Xi'an University of Technology, Xi'an, China","institution_ids":["https://openalex.org/I4210131919"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000799818","display_name":"Guo Xie","orcid":"https://orcid.org/0000-0002-9948-453X"},"institutions":[{"id":"https://openalex.org/I4210131919","display_name":"Xi'an University of Technology","ror":"https://ror.org/038avdt50","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210131919"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xie Guo","raw_affiliation_strings":["Xi'an University of Technology,Shaanxi Key Laboratory of Complex System Control and Intelligent Information Processing,Xi'an,China","Shaanxi Key Laboratory of Complex System Control and Intelligent Information Processing, Xi'an University of Technology, Xi'an, China"],"affiliations":[{"raw_affiliation_string":"Xi'an University of Technology,Shaanxi Key Laboratory of Complex System Control and Intelligent Information Processing,Xi'an,China","institution_ids":["https://openalex.org/I4210131919"]},{"raw_affiliation_string":"Shaanxi Key Laboratory of Complex System Control and Intelligent Information Processing, Xi'an University of Technology, Xi'an, China","institution_ids":["https://openalex.org/I4210131919"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091157395","display_name":"Fang\u2010Xiang Wu","orcid":"https://orcid.org/0000-0002-4593-9332"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Fang-Xiang Wu","raw_affiliation_strings":["University of Saskatchewan,Division of Biomedical Engineering,Department of Computer Science, Department of Mechanical Engineering,Saskatoon,Canada","Department of Computer Science, Department of Mechanical Engineering, Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, Canada"],"affiliations":[{"raw_affiliation_string":"University of Saskatchewan,Division of Biomedical Engineering,Department of Computer Science, Department of Mechanical Engineering,Saskatoon,Canada","institution_ids":["https://openalex.org/I32625721"]},{"raw_affiliation_string":"Department of Computer Science, Department of Mechanical Engineering, Division of Biomedical Engineering, University of Saskatchewan, Saskatoon, Canada","institution_ids":["https://openalex.org/I32625721"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5100449874"],"corresponding_institution_ids":["https://openalex.org/I4210131919"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.33810066,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"251","last_page":"254"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9878000020980835,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9739000201225281,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/piwi-interacting-rna","display_name":"Piwi-interacting RNA","score":0.9206767082214355},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.5987957119941711},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5805473327636719},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5676283836364746},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5611311793327332},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5293289422988892},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.4942619800567627},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.40540874004364014},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.3819703459739685},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3814418613910675},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21993869543075562},{"id":"https://openalex.org/keywords/rna-interference","display_name":"RNA interference","score":0.20008668303489685},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1697690188884735},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.08125659823417664}],"concepts":[{"id":"https://openalex.org/C147724379","wikidata":"https://www.wikidata.org/wiki/Q2367421","display_name":"Piwi-interacting RNA","level":5,"score":0.9206767082214355},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.5987957119941711},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5805473327636719},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5676283836364746},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5611311793327332},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5293289422988892},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.4942619800567627},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.40540874004364014},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.3819703459739685},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3814418613910675},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21993869543075562},{"id":"https://openalex.org/C166703698","wikidata":"https://www.wikidata.org/wiki/Q201993","display_name":"RNA interference","level":4,"score":0.20008668303489685},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1697690188884735},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.08125659823417664},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm58861.2023.10386052","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10386052","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.47999998927116394,"display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"},{"id":"https://openalex.org/F4320334971","display_name":"Science and Engineering Research Council","ror":"https://ror.org/00zgdb249"},{"id":"https://openalex.org/F4320336567","display_name":"Natural Science Basic Research Program of Shaanxi Province","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1774439556","https://openalex.org/W2089971639","https://openalex.org/W2145365809","https://openalex.org/W2146339022","https://openalex.org/W2148105495","https://openalex.org/W2213580165","https://openalex.org/W2605763657","https://openalex.org/W2756386045","https://openalex.org/W2799603881","https://openalex.org/W2901455448","https://openalex.org/W2961926658","https://openalex.org/W2995253087","https://openalex.org/W3009479537","https://openalex.org/W3087026888","https://openalex.org/W3206978724","https://openalex.org/W4200473711","https://openalex.org/W4323545774","https://openalex.org/W4353070816","https://openalex.org/W6743583902"],"related_works":["https://openalex.org/W2158912913","https://openalex.org/W4221011377","https://openalex.org/W2027956742","https://openalex.org/W2924035798","https://openalex.org/W3002797315","https://openalex.org/W3192072282","https://openalex.org/W2965423738","https://openalex.org/W2796472296","https://openalex.org/W4366421230","https://openalex.org/W2013814485"],"abstract_inverted_index":{"As":[0],"the":[1,12,41,60,122],"largest":[2],"class":[3],"of":[4,15,21,43,62],"small":[5],"non-coding":[6],"RNAs,":[7],"piRNAs":[8,44],"primarily":[9],"present":[10],"in":[11,23],"reproductive":[13],"cells":[14],"mammals,":[16],"which":[17],"influence":[18],"post-transcriptional":[19],"processes":[20],"mRNAs":[22],"multiple":[24],"ways.":[25],"Effective":[26],"methods":[27],"for":[28,58,140],"predicting":[29],"piRNA":[30,38,103,144],"and":[31,47,84,104,111,115,136],"mRNA":[32,106],"target":[33,76],"relationships":[34,61],"can":[35],"help":[36],"identify":[37],"functions,":[39],"investigate":[40,143],"possibility":[42],"as":[45,108],"biomarkers":[46],"therapeutic":[48],"targets.":[49],"In":[50],"this":[51],"study,":[52],"we":[53,73,100],"propose":[54],"a":[55,86,90,102,105,109],"computational":[56],"approach":[57],"classifying":[59],"piRNA-mRNA":[63,75,134],"pairs":[64],"based":[65],"on":[66],"an":[67],"interactive":[68],"inference":[69],"network":[70],"(IIN).":[71],"First,":[72],"gather":[74],"data,":[77],"collect":[78],"sequence":[79,107],"data":[80],"by":[81,96],"position":[82],"alignment,":[83],"construct":[85],"benchmark":[87],"dataset.":[88],"Furthermore,":[89],"reliable":[91],"negative":[92],"set":[93],"is":[94,118],"constructed":[95],"positive-unlabeled":[97],"learning.":[98],"Finally,":[99],"view":[101],"premise":[110],"hypothesis":[112],"sentence,":[113],"respectively,":[114],"IIN":[116],"model":[117],"used":[119],"to":[120,142],"predict":[121],"relationship":[123],"between":[124],"them.":[125],"The":[126],"experiments":[127],"demonstrate":[128],"that":[129],"our":[130],"method":[131],"effectively":[132],"characterizes":[133],"interaction":[135],"could":[137],"be":[138],"beneficial":[139],"researchers":[141],"functions.":[145]},"counts_by_year":[],"updated_date":"2025-12-25T23:11:45.687758","created_date":"2025-10-10T00:00:00"}
