{"id":"https://openalex.org/W4390971158","doi":"https://doi.org/10.1109/bibm58861.2023.10386047","title":"Graph Convolutional Network with Neural Inductive Matrix Completion for Predicting Disease-Related LncRNA Genes","display_name":"Graph Convolutional Network with Neural Inductive Matrix Completion for Predicting Disease-Related LncRNA Genes","publication_year":2023,"publication_date":"2023-12-05","ids":{"openalex":"https://openalex.org/W4390971158","doi":"https://doi.org/10.1109/bibm58861.2023.10386047"},"language":"en","primary_location":{"id":"doi:10.1109/bibm58861.2023.10386047","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10386047","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036669418","display_name":"Qiang Yang","orcid":"https://orcid.org/0000-0002-6570-1516"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]},{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qiang Yang","raw_affiliation_strings":["Northeast Forestry University,College of Computer and Control Engineering,Harbin,China","School of Medicine and Health, Harbin Institute of Technology, Harbin, China","College of Computer and Control Engineering, Northeast Forestry University, Harbin, China"],"affiliations":[{"raw_affiliation_string":"Northeast Forestry University,College of Computer and Control Engineering,Harbin,China","institution_ids":["https://openalex.org/I47689461"]},{"raw_affiliation_string":"School of Medicine and Health, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"College of Computer and Control Engineering, Northeast Forestry University, Harbin, China","institution_ids":["https://openalex.org/I47689461"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100610412","display_name":"Shuxin Zhang","orcid":"https://orcid.org/0000-0002-3798-6964"},"institutions":[{"id":"https://openalex.org/I1300757298","display_name":"Heilongjiang University of Science and Technology","ror":"https://ror.org/030xwyx96","country_code":"CN","type":"education","lineage":["https://openalex.org/I1300757298"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuxin Zhang","raw_affiliation_strings":["Heilongjiang University,School of Computer Science and Technology,Harbin,China","School of Computer Science and Technology, Heilongjiang University, Harbin, China"],"affiliations":[{"raw_affiliation_string":"Heilongjiang University,School of Computer Science and Technology,Harbin,China","institution_ids":["https://openalex.org/I1300757298"]},{"raw_affiliation_string":"School of Computer Science and Technology, Heilongjiang University, Harbin, China","institution_ids":["https://openalex.org/I1300757298"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024430250","display_name":"Suyu Dong","orcid":"https://orcid.org/0000-0001-7521-8782"},"institutions":[{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Suyu Dong","raw_affiliation_strings":["Northeast Forestry University,College of Computer and Control Engineering,Harbin,China","College of Computer and Control Engineering, Northeast Forestry University, Harbin, China"],"affiliations":[{"raw_affiliation_string":"Northeast Forestry University,College of Computer and Control Engineering,Harbin,China","institution_ids":["https://openalex.org/I47689461"]},{"raw_affiliation_string":"College of Computer and Control Engineering, Northeast Forestry University, Harbin, China","institution_ids":["https://openalex.org/I47689461"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115604951","display_name":"Long Xu","orcid":"https://orcid.org/0009-0007-4493-1797"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Long Xu","raw_affiliation_strings":["Harbin Institute of Technology,School of Computer Science and Technology,Harbin,China","School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China"],"affiliations":[{"raw_affiliation_string":"Harbin Institute of Technology,School of Computer Science and Technology,Harbin,China","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038137938","display_name":"Weihe Dong","orcid":"https://orcid.org/0000-0001-8022-9793"},"institutions":[{"id":"https://openalex.org/I47689461","display_name":"Northeast Forestry University","ror":"https://ror.org/02yxnh564","country_code":"CN","type":"education","lineage":["https://openalex.org/I47689461"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weihe Dong","raw_affiliation_strings":["Northeast Forestry University,College of Computer and Control Engineering,Harbin,China","College of Computer and Control Engineering, Northeast Forestry University, Harbin, China"],"affiliations":[{"raw_affiliation_string":"Northeast Forestry University,College of Computer and Control Engineering,Harbin,China","institution_ids":["https://openalex.org/I47689461"]},{"raw_affiliation_string":"College of Computer and Control Engineering, Northeast Forestry University, Harbin, China","institution_ids":["https://openalex.org/I47689461"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100628723","display_name":"Xiaokun Li","orcid":"https://orcid.org/0000-0002-6645-6890"},"institutions":[{"id":"https://openalex.org/I1300757298","display_name":"Heilongjiang University of Science and Technology","ror":"https://ror.org/030xwyx96","country_code":"CN","type":"education","lineage":["https://openalex.org/I1300757298"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaokun Li","raw_affiliation_strings":["Heilongjiang University,School of Computer Science and Technology,Harbin,China","School of Computer Science and Technology, Heilongjiang University, Harbin, China"],"affiliations":[{"raw_affiliation_string":"Heilongjiang University,School of Computer Science and Technology,Harbin,China","institution_ids":["https://openalex.org/I1300757298"]},{"raw_affiliation_string":"School of Computer Science and Technology, Heilongjiang University, Harbin, China","institution_ids":["https://openalex.org/I1300757298"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058127274","display_name":"Pengzhong Sun","orcid":"https://orcid.org/0000-0003-2299-482X"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pengzhong Sun","raw_affiliation_strings":["Harbin Institute of Technology,School of Computer Science and Technology,Harbin,China","School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China"],"affiliations":[{"raw_affiliation_string":"Harbin Institute of Technology,School of Computer Science and Technology,Harbin,China","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054864573","display_name":"Feng Jiang","orcid":"https://orcid.org/0000-0001-8342-1211"},"institutions":[{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Feng Jiang","raw_affiliation_strings":["Harbin Institute of Technology,School of Medicine and Health,Harbin,China","School of Medicine and Health, Harbin Institute of Technology, Harbin, China"],"affiliations":[{"raw_affiliation_string":"Harbin Institute of Technology,School of Medicine and Health,Harbin,China","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"School of Medicine and Health, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101574471","display_name":"Xianyu Zhang","orcid":"https://orcid.org/0000-0002-9738-2361"},"institutions":[{"id":"https://openalex.org/I4210103956","display_name":"Third Affiliated Hospital of Harbin Medical University","ror":"https://ror.org/01f77gp95","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210103956"]},{"id":"https://openalex.org/I156144747","display_name":"Harbin Medical University","ror":"https://ror.org/05jscf583","country_code":"CN","type":"education","lineage":["https://openalex.org/I156144747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xianyu Zhang","raw_affiliation_strings":["Harbin Medical University Cancer Hospital,Department of Breast Surgery,Harbin,China","Department of Breast Surgery, Harbin Medical University Cancer Hospital, Harbin, China"],"affiliations":[{"raw_affiliation_string":"Harbin Medical University Cancer Hospital,Department of Breast Surgery,Harbin,China","institution_ids":["https://openalex.org/I156144747","https://openalex.org/I4210103956"]},{"raw_affiliation_string":"Department of Breast Surgery, Harbin Medical University Cancer Hospital, Harbin, China","institution_ids":["https://openalex.org/I156144747","https://openalex.org/I4210103956"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5091843570","display_name":"Gongning Luo","orcid":"https://orcid.org/0000-0003-3662-0335"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]},{"id":"https://openalex.org/I204983213","display_name":"Harbin Institute of Technology","ror":"https://ror.org/01yqg2h08","country_code":"CN","type":"education","lineage":["https://openalex.org/I204983213"]}],"countries":["CN","SA"],"is_corresponding":false,"raw_author_name":"Gongning Luo","raw_affiliation_strings":["Harbin Institute of Technology,School of Computer Science and Technology,Harbin,China","Computer, Electrical and Mathematical Sciences & Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia","School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China"],"affiliations":[{"raw_affiliation_string":"Harbin Institute of Technology,School of Computer Science and Technology,Harbin,China","institution_ids":["https://openalex.org/I204983213"]},{"raw_affiliation_string":"Computer, Electrical and Mathematical Sciences & Engineering Division, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]},{"raw_affiliation_string":"School of Computer Science and Technology, Harbin Institute of Technology, Harbin, China","institution_ids":["https://openalex.org/I204983213"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":10,"corresponding_author_ids":["https://openalex.org/A5036669418"],"corresponding_institution_ids":["https://openalex.org/I204983213","https://openalex.org/I47689461"],"apc_list":null,"apc_paid":null,"fwci":0.2379,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.71064564,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"3595","last_page":"3601"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9463000297546387,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9387000203132629,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6939683556556702},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.5650697350502014},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5015568733215332},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.46263355016708374},{"id":"https://openalex.org/keywords/matrix-completion","display_name":"Matrix completion","score":0.4558415114879608},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.42621034383773804},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4170716106891632},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3933181166648865},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.25647154450416565}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6939683556556702},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.5650697350502014},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5015568733215332},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.46263355016708374},{"id":"https://openalex.org/C2778459887","wikidata":"https://www.wikidata.org/wiki/Q6787865","display_name":"Matrix completion","level":3,"score":0.4558415114879608},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.42621034383773804},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4170716106891632},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3933181166648865},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.25647154450416565},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C163716315","wikidata":"https://www.wikidata.org/wiki/Q901177","display_name":"Gaussian","level":2,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm58861.2023.10386047","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10386047","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":34,"referenced_works":["https://openalex.org/W611910056","https://openalex.org/W622497121","https://openalex.org/W1522301498","https://openalex.org/W1983335031","https://openalex.org/W1985951808","https://openalex.org/W1999008082","https://openalex.org/W2002185065","https://openalex.org/W2008446684","https://openalex.org/W2008491586","https://openalex.org/W2096027508","https://openalex.org/W2106029302","https://openalex.org/W2107952955","https://openalex.org/W2110957978","https://openalex.org/W2123688186","https://openalex.org/W2152970345","https://openalex.org/W2158787690","https://openalex.org/W2335029242","https://openalex.org/W2473876819","https://openalex.org/W2531500048","https://openalex.org/W2772618228","https://openalex.org/W2792533056","https://openalex.org/W2801501532","https://openalex.org/W2895679848","https://openalex.org/W2899830787","https://openalex.org/W2919115771","https://openalex.org/W2983688743","https://openalex.org/W3014858999","https://openalex.org/W3080501980","https://openalex.org/W3087983520","https://openalex.org/W3175544068","https://openalex.org/W4210976084","https://openalex.org/W4285026465","https://openalex.org/W4312318111","https://openalex.org/W4367297900"],"related_works":["https://openalex.org/W2994409951","https://openalex.org/W4293226380","https://openalex.org/W4293326902","https://openalex.org/W2604249670","https://openalex.org/W4321487865","https://openalex.org/W4313906399","https://openalex.org/W2953063457","https://openalex.org/W4391266461","https://openalex.org/W2590798552","https://openalex.org/W2811106690"],"abstract_inverted_index":{"Numerous":[0],"researches":[1],"emphasized":[2],"that":[3,128],"long":[4],"non-coding":[5],"RNA":[6],"(lncRNA)":[7],"plays":[8],"a":[9,91,151],"vital":[10],"factor":[11],"in":[12,105],"various":[13,102],"biological":[14,43],"processes,":[15],"and":[16,20,98],"its":[17],"mismatched":[18],"expression":[19],"dysfunction":[21],"are":[22],"tightly":[23],"linked":[24],"with":[25,84,94,154],"the":[26,50,58,71,80,101,106,110,118,159],"occurrence":[27],"of":[28,47,53,112,117],"human":[29],"diseases.":[30],"Thus,":[31],"computational":[32,148],"models":[33],"were":[34],"designed":[35],"to":[36,69,134,157],"identify":[37],"lncRNA-disease":[38,62,119],"interactions":[39],"by":[40],"merging":[41],"heterogeneous":[42,96],"data.":[44],"However,":[45],"most":[46],"them":[48],"neglected":[49],"intrinsic":[51],"structure":[52],"multi-source":[54,95],"information,":[55],"which":[56],"limits":[57],"performance":[59],"for":[60,73,109,138],"potential":[61],"association":[63],"prediction.":[64],"Here,":[65],"GCN-NIMC":[66,131],"is":[67,132],"introduced":[68],"alleviate":[70],"dilemma":[72],"disease-associated":[74],"lncRNA":[75,141],"genes":[76],"identification":[77],"based":[78],"on":[79,123],"graph":[81],"convolutional":[82],"network":[83],"neural":[85],"inductive":[86],"matrix.":[87],"This":[88],"method":[89,149],"builds":[90],"feature":[92,107,115],"matrix":[93,108],"data":[97],"then":[99],"learn":[100],"information":[103],"contained":[104],"sake":[111],"acquiring":[113],"better":[114],"expressions":[116],"interactions.":[120],"Experimental":[121],"results":[122],"10-repeated":[124],"5-fold":[125],"cross-validation":[126],"demonstrated":[127],"our":[129,147],"proposed":[130],"superior":[133],"existing":[135],"cutting-edge":[136],"methods":[137],"identifying":[139],"disease-related":[140],"genes.":[142],"Furthermore,":[143],"case":[144],"studies":[145],"confirmed":[146],"as":[150],"practical":[152],"tool":[153],"clinical":[155],"benefits":[156],"develop":[158],"therapeutic":[160],"schedule":[161],"at":[162],"lncRNA-level.":[163]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-04-03T22:45:19.894376","created_date":"2025-10-10T00:00:00"}