{"id":"https://openalex.org/W4390971202","doi":"https://doi.org/10.1109/bibm58861.2023.10385955","title":"Network-based analysis to uncover drug-induced adverse side-effects","display_name":"Network-based analysis to uncover drug-induced adverse side-effects","publication_year":2023,"publication_date":"2023-12-05","ids":{"openalex":"https://openalex.org/W4390971202","doi":"https://doi.org/10.1109/bibm58861.2023.10385955"},"language":"en","primary_location":{"id":"doi:10.1109/bibm58861.2023.10385955","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385955","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017183612","display_name":"Alessio Funari","orcid":"https://orcid.org/0000-0002-1132-4719"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210162062","display_name":"Istituto di Analisi dei Sistemi ed Informatica Antonio Ruberti","ror":"https://ror.org/054ye0e45","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210155236","https://openalex.org/I4210162062"]},{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alessio Funari","raw_affiliation_strings":["Sapienza University of Rome,Department of Translational and Precision Medicine,Rome,Italy","Department of Translational and Precision Medicine, Sapienza University of Rome, Rome, Italy","Institute for Systems Analysis and Computer Science \"Antonio Ruberti\", National Research Council, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sapienza University of Rome,Department of Translational and Precision Medicine,Rome,Italy","institution_ids":["https://openalex.org/I861853513"]},{"raw_affiliation_string":"Department of Translational and Precision Medicine, Sapienza University of Rome, Rome, Italy","institution_ids":["https://openalex.org/I861853513"]},{"raw_affiliation_string":"Institute for Systems Analysis and Computer Science \"Antonio Ruberti\", National Research Council, Rome, Italy","institution_ids":["https://openalex.org/I4210162062","https://openalex.org/I4210155236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043250067","display_name":"Paola Paci","orcid":"https://orcid.org/0000-0002-9393-2047"},"institutions":[{"id":"https://openalex.org/I28166907","display_name":"Karolinska Institutet","ror":"https://ror.org/056d84691","country_code":"SE","type":"education","lineage":["https://openalex.org/I28166907"]},{"id":"https://openalex.org/I861853513","display_name":"Sapienza University of Rome","ror":"https://ror.org/02be6w209","country_code":"IT","type":"education","lineage":["https://openalex.org/I861853513"]}],"countries":["IT","SE"],"is_corresponding":false,"raw_author_name":"Paola Paci","raw_affiliation_strings":["Sapienza University of Rome,Department of Computer, Control and Management Engineering,Rome,Italy","Karolinska Institutet, Stockholm, Sweden","Department of Computer, Control and Management Engineering, Sapienza University of Rome, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Sapienza University of Rome,Department of Computer, Control and Management Engineering,Rome,Italy","institution_ids":["https://openalex.org/I861853513"]},{"raw_affiliation_string":"Karolinska Institutet, Stockholm, Sweden","institution_ids":["https://openalex.org/I28166907"]},{"raw_affiliation_string":"Department of Computer, Control and Management Engineering, Sapienza University of Rome, Rome, Italy","institution_ids":["https://openalex.org/I861853513"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023495931","display_name":"Federica Conte","orcid":"https://orcid.org/0000-0003-0427-1476"},"institutions":[{"id":"https://openalex.org/I4210115688","display_name":"Institute for Systems Analysis","ror":"https://ror.org/02kmet255","country_code":"RU","type":"facility","lineage":["https://openalex.org/I4210115688"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]},{"id":"https://openalex.org/I4210162062","display_name":"Istituto di Analisi dei Sistemi ed Informatica Antonio Ruberti","ror":"https://ror.org/054ye0e45","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210155236","https://openalex.org/I4210162062"]}],"countries":["IT","RU"],"is_corresponding":false,"raw_author_name":"Federica Conte","raw_affiliation_strings":["National Research Council,Institute for Systems Analysis and Computer Science \"Antonio Ruberti\",Rome,Italy","Institute for Systems Analysis and Computer Science \"Antonio Ruberti\", National Research Council, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Research Council,Institute for Systems Analysis and Computer Science \"Antonio Ruberti\",Rome,Italy","institution_ids":["https://openalex.org/I4210115688"]},{"raw_affiliation_string":"Institute for Systems Analysis and Computer Science \"Antonio Ruberti\", National Research Council, Rome, Italy","institution_ids":["https://openalex.org/I4210162062","https://openalex.org/I4210155236"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1863,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.58852328,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"3632","last_page":"3637"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11178","display_name":"Receptor Mechanisms and Signaling","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/side-effect","display_name":"Side effect (computer science)","score":0.7872133851051331},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.6320845484733582},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.5458763241767883},{"id":"https://openalex.org/keywords/demand-side","display_name":"Demand side","score":0.47344064712524414},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4449823200702667},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.4275243878364563},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.3682284355163574},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.34690380096435547},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.320552259683609},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.28004997968673706},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23828646540641785},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1438227891921997}],"concepts":[{"id":"https://openalex.org/C3454156","wikidata":"https://www.wikidata.org/wiki/Q1144241","display_name":"Side effect (computer science)","level":2,"score":0.7872133851051331},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.6320845484733582},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.5458763241767883},{"id":"https://openalex.org/C3020254827","wikidata":"https://www.wikidata.org/wiki/Q5255016","display_name":"Demand side","level":2,"score":0.47344064712524414},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4449823200702667},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.4275243878364563},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.3682284355163574},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.34690380096435547},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.320552259683609},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.28004997968673706},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23828646540641785},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1438227891921997},{"id":"https://openalex.org/C175444787","wikidata":"https://www.wikidata.org/wiki/Q39072","display_name":"Microeconomics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/bibm58861.2023.10385955","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385955","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmh:oai:iris.uniroma1.it:11573/1707637","is_oa":false,"landing_page_url":"https://hdl.handle.net/11573/1707637","pdf_url":null,"source":{"id":"https://openalex.org/S4377196107","display_name":"IRIS Research product catalog (Sapienza University of Rome)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W145960334","https://openalex.org/W1160401237","https://openalex.org/W1990448891","https://openalex.org/W2006617902","https://openalex.org/W2046885214","https://openalex.org/W2053559093","https://openalex.org/W2062533676","https://openalex.org/W2085752173","https://openalex.org/W2116581628","https://openalex.org/W2131273916","https://openalex.org/W2345356016","https://openalex.org/W2612467560","https://openalex.org/W2767891136","https://openalex.org/W2826750344","https://openalex.org/W2951531839","https://openalex.org/W2983166786","https://openalex.org/W2990083992","https://openalex.org/W3016962540","https://openalex.org/W3133533830","https://openalex.org/W3138130200","https://openalex.org/W3158868742","https://openalex.org/W4224236693"],"related_works":["https://openalex.org/W3129816939","https://openalex.org/W2912862995","https://openalex.org/W2985427592","https://openalex.org/W2101501829","https://openalex.org/W2400569965","https://openalex.org/W2060263731","https://openalex.org/W2003194288","https://openalex.org/W391093122","https://openalex.org/W4403013486","https://openalex.org/W2903773100"],"abstract_inverted_index":{"Despite":[0],"the":[1,31,43,80,89,94,97,114,122,143,177],"drug":[2],"approval":[3],"process":[4],"consists":[5],"of":[6,34,45,96,116,124,139,145,179],"extremely":[7],"rigorous":[8],"clinical":[9],"and":[10,36,72,75,83,168],"preclinical":[11],"studies,":[12],"not":[13,107],"all":[14,162],"side":[15,46,73,99,111,146,169,181],"effects":[16,47,147,182],"are":[17,48],"identified":[18,88],"before":[19],"its":[20],"marketing,":[21],"posing":[22],"a":[23,55,136,158],"significant":[24],"risk":[25],"to":[26,65,109,149,160,176],"public":[27],"health.":[28],"Furthermore,":[29],"considering":[30],"huge":[32],"use":[33],"economic":[35],"human":[37],"resources,":[38],"in-silico":[39],"predictive":[40],"approaches":[41],"for":[42],"identification":[44],"essential.":[49],"In":[50],"this":[51,154],"study,":[52],"we":[53,76,128,156],"introduce":[54],"new":[56],"method":[57,172],"based":[58],"on":[59,79,131,153],"random":[60],"walk":[61],"with":[62,105],"restart":[63],"algorithm":[64],"delineate":[66],"previously":[67],"unidentified":[68],"links":[69],"between":[70,166],"drugs":[71,104,106,134,167],"effects,":[74],"apply":[77],"it":[78],"drug-induced":[81],"Asthma":[82],"long":[84],"QT":[85],"syndrome.":[86],"We":[87],"genes":[90,117,140],"potentially":[91],"involved":[92,141],"in":[93,142],"development":[95,144],"analyzed":[98],"effect":[100],"by":[101,121],"comparing":[102],"side-effect-related":[103,133],"known":[108],"induce":[110],"effects.":[112,170],"Analyzing":[113],"sets":[115],"most":[118],"likely":[119],"influenced":[120],"perturbation":[123],"each":[125],"individual":[126],"drug,":[127],"observed":[129],"that,":[130],"average,":[132],"perturb":[135],"higher":[137],"percentage":[138],"compared":[148],"side-effect-unrelated":[150],"drugs.":[151],"Based":[152],"finding,":[155],"developed":[157],"classifier":[159],"explore":[161],"possible":[163],"unknown":[164],"associations":[165],"This":[171],"can":[173],"be":[174],"extended":[175],"analysis":[178],"other":[180],"as":[183],"well.":[184]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2024-01-19T00:00:00"}
