{"id":"https://openalex.org/W4390970632","doi":"https://doi.org/10.1109/bibm58861.2023.10385844","title":"A multi-view comparative learning method for spatial transcriptomics data clustering","display_name":"A multi-view comparative learning method for spatial transcriptomics data clustering","publication_year":2023,"publication_date":"2023-12-05","ids":{"openalex":"https://openalex.org/W4390970632","doi":"https://doi.org/10.1109/bibm58861.2023.10385844"},"language":"en","primary_location":{"id":"doi:10.1109/bibm58861.2023.10385844","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm58861.2023.10385844","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053073532","display_name":"Wei Peng","orcid":"https://orcid.org/0000-0002-9572-951X"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wei Peng","raw_affiliation_strings":["Kunming University of Science and Technology Computer Technology,Faculty of Information Engineering and Automation","Faculty of Information Engineering and Automation, Kunming University of Science and Technology Computer Technology","Application Key Lab of Yunnan Province, Kunming University of Science and Technology, Kunming, China"],"affiliations":[{"raw_affiliation_string":"Kunming University of Science and Technology Computer Technology,Faculty of Information Engineering and Automation","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Faculty of Information Engineering and Automation, Kunming University of Science and Technology Computer Technology","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Application Key Lab of Yunnan Province, Kunming University of Science and Technology, Kunming, China","institution_ids":["https://openalex.org/I10660446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100361540","display_name":"Zhihao Zhang","orcid":"https://orcid.org/0000-0003-0254-2113"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhihao Zhang","raw_affiliation_strings":["Kunming University of Science and Technology Computer Technology,Faculty of Information Engineering and Automation","Application Key Lab of Yunnan Province, Kunming University of Science and Technology, Kunming, China","Faculty of Information Engineering and Automation, Kunming University of Science and Technology Computer Technology"],"affiliations":[{"raw_affiliation_string":"Kunming University of Science and Technology Computer Technology,Faculty of Information Engineering and Automation","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Application Key Lab of Yunnan Province, Kunming University of Science and Technology, Kunming, China","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Faculty of Information Engineering and Automation, Kunming University of Science and Technology Computer Technology","institution_ids":["https://openalex.org/I10660446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100752235","display_name":"Wei Dai","orcid":"https://orcid.org/0000-0002-3093-6454"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Dai","raw_affiliation_strings":["Kunming University of Science and Technology,Faculty of Information Engineering and Automation,Kunming,China","Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, China"],"affiliations":[{"raw_affiliation_string":"Kunming University of Science and Technology,Faculty of Information Engineering and Automation,Kunming,China","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, China","institution_ids":["https://openalex.org/I10660446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102760647","display_name":"Xiaodong Fu","orcid":"https://orcid.org/0000-0002-1354-2293"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaodong Fu","raw_affiliation_strings":["Kunming University of Science and Technology,Faculty of Information Engineering and Automation,Kunming,China","Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, China"],"affiliations":[{"raw_affiliation_string":"Kunming University of Science and Technology,Faculty of Information Engineering and Automation,Kunming,China","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, China","institution_ids":["https://openalex.org/I10660446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100418903","display_name":"Li Liu","orcid":"https://orcid.org/0000-0003-2566-7357"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Liu","raw_affiliation_strings":["Kunming University of Science and Technology,Faculty of Information Engineering and Automation,Kunming,China","Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, China"],"affiliations":[{"raw_affiliation_string":"Kunming University of Science and Technology,Faculty of Information Engineering and Automation,Kunming,China","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, China","institution_ids":["https://openalex.org/I10660446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004666738","display_name":"Lijun Liu","orcid":"https://orcid.org/0000-0002-9855-1577"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lijun Liu","raw_affiliation_strings":["Kunming University of Science and Technology,Faculty of Information Engineering and Automation,Kunming,China","Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, China"],"affiliations":[{"raw_affiliation_string":"Kunming University of Science and Technology,Faculty of Information Engineering and Automation,Kunming,China","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, China","institution_ids":["https://openalex.org/I10660446"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5105144366","display_name":"Ning Yu","orcid":null},"institutions":[{"id":"https://openalex.org/I4864440","display_name":"SUNY Brockport","ror":"https://ror.org/0306aeb62","country_code":"US","type":"education","lineage":["https://openalex.org/I4864440"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ning Yu","raw_affiliation_strings":["State University of New York,The College at Brockport,Department of Computing Sciences,Brockport,NY,14422"],"affiliations":[{"raw_affiliation_string":"State University of New York,The College at Brockport,Department of Computing Sciences,Brockport,NY,14422","institution_ids":["https://openalex.org/I4864440"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5053073532"],"corresponding_institution_ids":["https://openalex.org/I10660446"],"apc_list":null,"apc_paid":null,"fwci":0.3181,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.65438497,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"287","last_page":"292"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9789999723434448,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7549911737442017},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7281408309936523},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6049941182136536},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5714893937110901},{"id":"https://openalex.org/keywords/unsupervised-learning","display_name":"Unsupervised learning","score":0.5128927230834961},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4742495119571686},{"id":"https://openalex.org/keywords/spatial-analysis","display_name":"Spatial analysis","score":0.45049938559532166},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.43742847442626953},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.41322648525238037},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3943241834640503},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.0907745361328125}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7549911737442017},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7281408309936523},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6049941182136536},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5714893937110901},{"id":"https://openalex.org/C8038995","wikidata":"https://www.wikidata.org/wiki/Q1152135","display_name":"Unsupervised learning","level":2,"score":0.5128927230834961},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4742495119571686},{"id":"https://openalex.org/C159620131","wikidata":"https://www.wikidata.org/wiki/Q1938983","display_name":"Spatial analysis","level":2,"score":0.45049938559532166},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.43742847442626953},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.41322648525238037},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3943241834640503},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0907745361328125},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm58861.2023.10385844","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm58861.2023.10385844","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323193","display_name":"Natural Science Foundation of Yunnan Province","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W2763148304","https://openalex.org/W2790295707","https://openalex.org/W2800392236","https://openalex.org/W2912334138","https://openalex.org/W2983296017","https://openalex.org/W3032266082","https://openalex.org/W3094502228","https://openalex.org/W3108118546","https://openalex.org/W3112563877","https://openalex.org/W3121907939","https://openalex.org/W3126958162","https://openalex.org/W3138548670","https://openalex.org/W3169098619","https://openalex.org/W3192677404","https://openalex.org/W3194628804","https://openalex.org/W3206417123","https://openalex.org/W4226192560","https://openalex.org/W4235169531","https://openalex.org/W4244166529","https://openalex.org/W4292723103","https://openalex.org/W4295312788","https://openalex.org/W4295521014","https://openalex.org/W4306406844","https://openalex.org/W4322738920","https://openalex.org/W4362469505","https://openalex.org/W6735913928","https://openalex.org/W6766978945","https://openalex.org/W6779238151","https://openalex.org/W6784333009","https://openalex.org/W6815484573"],"related_works":["https://openalex.org/W4298130764","https://openalex.org/W3196155444","https://openalex.org/W4321844043","https://openalex.org/W3210156800","https://openalex.org/W4390062853","https://openalex.org/W4297883248","https://openalex.org/W4255830763","https://openalex.org/W1583266947","https://openalex.org/W4286799911","https://openalex.org/W3165437720"],"abstract_inverted_index":{"Clustering":[0],"individual":[1],"cells":[2],"or":[3,53],"spots":[4],"based":[5],"on":[6,73,155],"their":[7],"gene":[8,42,78],"expression":[9,79],"profiles":[10],"in":[11,171],"a":[12,16,59,107,156],"spatial":[13,33],"context":[14],"is":[15],"powerful":[17],"approach":[18],"to":[19,93,111],"uncovering":[20],"the":[21,95,101,116,137,140,147,152,175],"underlying":[22],"biological":[23],"diversity":[24],"and":[25,46,84,97,119,125,185],"relationships":[26],"among":[27],"cells.":[28],"The":[29,104,123,162],"intricate":[30],"information":[31],"within":[32],"transcriptomics":[34],"data":[35,49,68,75],"demands":[36],"sophisticated":[37],"algorithms":[38],"that":[39,165],"effectively":[40],"integrate":[41],"expression,":[43],"cell":[44,52,81],"position,":[45],"tissue":[47],"image":[48,85],"for":[50,64,143],"accurate":[51],"spot":[54],"clustering.":[55],"This":[56],"work":[57],"proposes":[58],"Multi-View":[60],"Comparative":[61],"Learning":[62],"method":[63,154],"clustering":[65,145],"Spatial":[66],"Transcriptomics":[67],"(MVCLST).":[69],"MVCLST":[70,153,166,179],"first":[71],"builds":[72],"two":[74,102,117],"views":[76,118,130],"using":[77,133],"profiles,":[80],"space":[82],"coordinates,":[83],"features.":[86,149],"Then":[87],"it":[88],"employs":[89,106,139],"four":[90],"different":[91],"encoders":[92],"capture":[94],"common":[96],"private":[98,126],"features":[99,127],"of":[100,146],"views.":[103],"model":[105,138],"contrastive":[108],"learning":[109],"loss":[110],"encourage":[112],"effective":[113],"interaction":[114],"between":[115],"ensure":[120],"feature":[121],"consistency.":[122],"shared":[124],"from":[128],"both":[129],"are":[131],"fused":[132],"corresponding":[134],"decoders.":[135],"Finally,":[136],"Leiden":[141],"algorithm":[142],"downstream":[144],"learned":[148],"We":[150],"test":[151],"human":[157],"dorsolateral":[158],"prefrontal":[159],"cortex":[160],"dataset.":[161],"results":[163],"show":[164],"outperforms":[167],"other":[168],"state-of-the-art":[169],"methods":[170],"most":[172],"cases.":[173],"Additionally,":[174],"clusters":[176],"identified":[177],"by":[178],"align":[180],"closely":[181],"with":[182],"manual":[183],"annotations":[184],"established":[186],"neuroscience":[187],"definitions.":[188]},"counts_by_year":[{"year":2024,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
