{"id":"https://openalex.org/W4390992221","doi":"https://doi.org/10.1109/bibm58861.2023.10385836","title":"Causal Intervention for Measuring Confidence in Drug-Target Interaction Prediction","display_name":"Causal Intervention for Measuring Confidence in Drug-Target Interaction Prediction","publication_year":2023,"publication_date":"2023-12-05","ids":{"openalex":"https://openalex.org/W4390992221","doi":"https://doi.org/10.1109/bibm58861.2023.10385836"},"language":"en","primary_location":{"id":"doi:10.1109/bibm58861.2023.10385836","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385836","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101873591","display_name":"Wenting Ye","orcid":"https://orcid.org/0000-0002-1330-6469"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenting Ye","raw_affiliation_strings":["Huazhong Agric. University,College of Informatics,Wuhan,China","College of Informatics, Huazhong Agric. University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Huazhong Agric. University,College of Informatics,Wuhan,China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"College of Informatics, Huazhong Agric. University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100369855","display_name":"Chen Li","orcid":"https://orcid.org/0000-0002-6367-0998"},"institutions":[{"id":"https://openalex.org/I60134161","display_name":"Nagoya University","ror":"https://ror.org/04chrp450","country_code":"JP","type":"education","lineage":["https://openalex.org/I60134161"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Chen Li","raw_affiliation_strings":["Nagoya University,Graduate School of Informatics,Chikusa,Japan,464-8602"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nagoya University,Graduate School of Informatics,Chikusa,Japan,464-8602","institution_ids":["https://openalex.org/I60134161"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100924953","display_name":"Yang Xie","orcid":null},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Xie","raw_affiliation_strings":["Huazhong Agric. University,College of Informatics,Wuhan,China","College of Informatics, Huazhong Agric. University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Huazhong Agric. University,College of Informatics,Wuhan,China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"College of Informatics, Huazhong Agric. University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100448121","display_name":"Wen Zhang","orcid":"https://orcid.org/0000-0001-5221-2628"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wen Zhang","raw_affiliation_strings":["Huazhong Agric. University,College of Informatics,Wuhan,China","College of Informatics, Huazhong Agric. University, Wuhan, China","Hubei Key Laboratory of Agricultural Bioinformatics, Huazhong Agricultural University, Wuhan, China","Key Laboratory of Smart Farming for Agricultural Animals, Huazhong Agricultural University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Huazhong Agric. University,College of Informatics,Wuhan,China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"College of Informatics, Huazhong Agric. University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics, Huazhong Agricultural University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Key Laboratory of Smart Farming for Agricultural Animals, Huazhong Agricultural University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100412608","display_name":"Hongyu Zhang","orcid":"https://orcid.org/0000-0002-8078-4401"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hong-Yu Zhang","raw_affiliation_strings":["Huazhong Agric. University,College of Informatics,Wuhan,China","College of Informatics, Huazhong Agric. University, Wuhan, China","Hubei Key Laboratory of Agricultural Bioinformatics, Huazhong Agricultural University, Wuhan, China","Key Laboratory of Smart Farming for Agricultural Animals, Huazhong Agricultural University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Huazhong Agric. University,College of Informatics,Wuhan,China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"College of Informatics, Huazhong Agric. University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics, Huazhong Agricultural University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Key Laboratory of Smart Farming for Agricultural Animals, Huazhong Agricultural University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100412545","display_name":"Bowen Wang","orcid":"https://orcid.org/0000-0002-2911-5595"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bowen Wang","raw_affiliation_strings":["Huazhong Agric. University,College of Informatics,Wuhan,China","College of Informatics, Huazhong Agric. University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Huazhong Agric. University,College of Informatics,Wuhan,China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"College of Informatics, Huazhong Agric. University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065281913","display_name":"Debo Cheng","orcid":"https://orcid.org/0000-0002-0383-1462"},"institutions":[{"id":"https://openalex.org/I170239107","display_name":"University of South Australia","ror":"https://ror.org/01p93h210","country_code":"AU","type":"education","lineage":["https://openalex.org/I170239107"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Debo Cheng","raw_affiliation_strings":["University of South Australia,UniSA STEM,Adelaide,Australia,5095"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of South Australia,UniSA STEM,Adelaide,Australia,5095","institution_ids":["https://openalex.org/I170239107"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049033206","display_name":"Zaiwen Feng","orcid":"https://orcid.org/0000-0003-1618-3553"},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zaiwen Feng","raw_affiliation_strings":["Huazhong Agric. University,College of Informatics,Wuhan,China","College of Informatics, Huazhong Agric. University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Huazhong Agric. University,College of Informatics,Wuhan,China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"College of Informatics, Huazhong Agric. University, Wuhan, China","institution_ids":["https://openalex.org/I204823248"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.3054362,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6411202549934387},{"id":"https://openalex.org/keywords/drug-development","display_name":"Drug development","score":0.5901772975921631},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.4945051372051239},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.47400009632110596},{"id":"https://openalex.org/keywords/intervention","display_name":"Intervention (counseling)","score":0.4539267420768738},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.4530772864818573},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.42964762449264526},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42828431725502014},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.42387717962265015},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.41499239206314087},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3523898124694824},{"id":"https://openalex.org/keywords/risk-analysis","display_name":"Risk analysis (engineering)","score":0.3231683373451233},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.19792333245277405},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.15640440583229065},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.10373792052268982},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.10252079367637634}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6411202549934387},{"id":"https://openalex.org/C64903051","wikidata":"https://www.wikidata.org/wiki/Q2198549","display_name":"Drug development","level":3,"score":0.5901772975921631},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.4945051372051239},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.47400009632110596},{"id":"https://openalex.org/C2780665704","wikidata":"https://www.wikidata.org/wiki/Q959298","display_name":"Intervention (counseling)","level":2,"score":0.4539267420768738},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.4530772864818573},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.42964762449264526},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42828431725502014},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.42387717962265015},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.41499239206314087},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3523898124694824},{"id":"https://openalex.org/C112930515","wikidata":"https://www.wikidata.org/wiki/Q4389547","display_name":"Risk analysis (engineering)","level":1,"score":0.3231683373451233},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.19792333245277405},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.15640440583229065},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.10373792052268982},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.10252079367637634},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm58861.2023.10385836","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385836","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320334704","display_name":"Australian Research Council","ror":"https://ror.org/05mmh0f86"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W1618905105","https://openalex.org/W2098824882","https://openalex.org/W2143891888","https://openalex.org/W2153838454","https://openalex.org/W2256119113","https://openalex.org/W2283196293","https://openalex.org/W2570516417","https://openalex.org/W2785947426","https://openalex.org/W2793951981","https://openalex.org/W2971897985","https://openalex.org/W2994634959","https://openalex.org/W3004273418","https://openalex.org/W3046075728","https://openalex.org/W3093030756","https://openalex.org/W3101075487","https://openalex.org/W3132689447","https://openalex.org/W3165146808","https://openalex.org/W3171139287","https://openalex.org/W3183998990","https://openalex.org/W3187635370","https://openalex.org/W4200227922","https://openalex.org/W4200563092","https://openalex.org/W4210690069","https://openalex.org/W4389386407","https://openalex.org/W6636501900","https://openalex.org/W6718112784","https://openalex.org/W6739651123","https://openalex.org/W6781649520"],"related_works":["https://openalex.org/W2480711475","https://openalex.org/W4206379684","https://openalex.org/W2061997414","https://openalex.org/W1587522533","https://openalex.org/W4294163344","https://openalex.org/W2366105490","https://openalex.org/W2580680567","https://openalex.org/W2127264463","https://openalex.org/W3164924009","https://openalex.org/W1585256759"],"abstract_inverted_index":{"Identifying":[0],"and":[1,12,26,35,45,57,69,152],"discovering":[2],"drug-target":[3,84,112],"interactions":[4],"(DTIs)":[5],"are":[6,145],"vital":[7],"steps":[8],"in":[9,19,22,49,59,148],"drug":[10,29,50,60,71,156,165],"discovery":[11],"development.":[13,166],"They":[14],"play":[15],"a":[16,94],"crucial":[17],"role":[18],"assisting":[20],"scientists":[21],"finding":[23],"new":[24],"drugs":[25],"accelerating":[27],"the":[28,81,90,103,108,111,120,132,150,162],"development":[30,72,153,157],"process.":[31],"Recently,":[32],"knowledge":[33,36,87],"graph":[34,37],"embedding":[38],"(KGE)":[39],"models":[40,54],"have":[41],"made":[42],"rapid":[43],"advancements":[44],"demonstrated":[46],"impressive":[47],"performance":[48],"discovery.":[51],"However,":[52],"such":[53],"lack":[55],"authenticity":[56],"accuracy":[58,109,133],"target":[61],"identification,":[62],"leading":[63],"to":[64,101,106],"an":[65],"increased":[66],"misjudgment":[67],"rate":[68],"reduced":[70],"efficiency.":[73],"To":[74],"address":[75],"these":[76],"issues,":[77],"we":[78],"focus":[79],"on":[80,126],"problem":[82],"of":[83,110,134,154,164],"interactions,":[85],"with":[86],"mapping":[88],"as":[89],"core":[91],"technology.":[92],"Specifically,":[93],"causal":[95,127],"intervention-based":[96],"confidence":[97,122],"measure":[98],"is":[99],"employed":[100],"assess":[102],"triplet":[104],"score":[105],"improve":[107],"interaction":[113],"prediction":[114],"model.":[115],"Experimental":[116],"results":[117,144],"demonstrate":[118],"that":[119],"developed":[121],"measurement":[123],"method":[124],"based":[125],"intervention":[128],"can":[129],"significantly":[130,160],"enhance":[131],"DTI":[135],"link":[136],"prediction,":[137],"particularly":[138],"for":[139],"high-precision":[140],"models.":[141],"The":[142],"predicted":[143],"more":[146],"valuable":[147],"guiding":[149],"design":[151],"subsequent":[155],"experiments,":[158],"thereby":[159],"improving":[161],"efficiency":[163]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
