{"id":"https://openalex.org/W4390970162","doi":"https://doi.org/10.1109/bibm58861.2023.10385795","title":"KSGTN-DDI: Key Substructure-aware Graph Transformer Network for Drug-drug Interaction Prediction","display_name":"KSGTN-DDI: Key Substructure-aware Graph Transformer Network for Drug-drug Interaction Prediction","publication_year":2023,"publication_date":"2023-12-05","ids":{"openalex":"https://openalex.org/W4390970162","doi":"https://doi.org/10.1109/bibm58861.2023.10385795"},"language":"en","primary_location":{"id":"doi:10.1109/bibm58861.2023.10385795","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm58861.2023.10385795","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005299625","display_name":"Peiliang Zhang","orcid":"https://orcid.org/0000-0002-1826-3349"},"institutions":[{"id":"https://openalex.org/I196699116","display_name":"Wuhan University of Technology","ror":"https://ror.org/03fe7t173","country_code":"CN","type":"education","lineage":["https://openalex.org/I196699116"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Peiliang Zhang","raw_affiliation_strings":["Wuhan University of Technology,School of Computer Science and Artificial Intelligence,Wuhan,China,430070"],"affiliations":[{"raw_affiliation_string":"Wuhan University of Technology,School of Computer Science and Artificial Intelligence,Wuhan,China,430070","institution_ids":["https://openalex.org/I196699116"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081224801","display_name":"Yuanjie Liu","orcid":"https://orcid.org/0000-0002-3041-893X"},"institutions":[{"id":"https://openalex.org/I196699116","display_name":"Wuhan University of Technology","ror":"https://ror.org/03fe7t173","country_code":"CN","type":"education","lineage":["https://openalex.org/I196699116"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuanjie Liu","raw_affiliation_strings":["Wuhan University of Technology,School of Computer Science and Artificial Intelligence,Wuhan,China,430070"],"affiliations":[{"raw_affiliation_string":"Wuhan University of Technology,School of Computer Science and Artificial Intelligence,Wuhan,China,430070","institution_ids":["https://openalex.org/I196699116"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019778525","display_name":"Zhishu Shen","orcid":"https://orcid.org/0000-0002-3123-4390"},"institutions":[{"id":"https://openalex.org/I196699116","display_name":"Wuhan University of Technology","ror":"https://ror.org/03fe7t173","country_code":"CN","type":"education","lineage":["https://openalex.org/I196699116"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhishu Shen","raw_affiliation_strings":["Wuhan University of Technology,School of Computer Science and Artificial Intelligence,Wuhan,China,430070"],"affiliations":[{"raw_affiliation_string":"Wuhan University of Technology,School of Computer Science and Artificial Intelligence,Wuhan,China,430070","institution_ids":["https://openalex.org/I196699116"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5005299625"],"corresponding_institution_ids":["https://openalex.org/I196699116"],"apc_list":null,"apc_paid":null,"fwci":0.6061,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.73492872,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":96},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10375","display_name":"Pharmacogenetics and Drug Metabolism","score":0.9664000272750854,"subfield":{"id":"https://openalex.org/subfields/3004","display_name":"Pharmacology"},"field":{"id":"https://openalex.org/fields/30","display_name":"Pharmacology, Toxicology and Pharmaceutics"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9635999798774719,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/substructure","display_name":"Substructure","score":0.9423122406005859},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.6396149396896362},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6281728744506836},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.5126499533653259},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.47296756505966187},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.4692297875881195},{"id":"https://openalex.org/keywords/drug-drug-interaction","display_name":"Drug-drug interaction","score":0.461581289768219},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.4411105513572693},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.22514495253562927},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1550370752811432},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.14548984169960022},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09310290217399597},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.07571113109588623}],"concepts":[{"id":"https://openalex.org/C99679407","wikidata":"https://www.wikidata.org/wiki/Q56761637","display_name":"Substructure","level":2,"score":0.9423122406005859},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.6396149396896362},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6281728744506836},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.5126499533653259},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.47296756505966187},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.4692297875881195},{"id":"https://openalex.org/C2910466267","wikidata":"https://www.wikidata.org/wiki/Q718753","display_name":"Drug-drug interaction","level":3,"score":0.461581289768219},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.4411105513572693},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.22514495253562927},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1550370752811432},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.14548984169960022},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09310290217399597},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.07571113109588623},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm58861.2023.10385795","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm58861.2023.10385795","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.5299999713897705}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W2945591540","https://openalex.org/W2966357564","https://openalex.org/W2972689486","https://openalex.org/W3024894285","https://openalex.org/W3102794373","https://openalex.org/W3157889929","https://openalex.org/W3167812602","https://openalex.org/W3208102118","https://openalex.org/W4205177317","https://openalex.org/W4206419503","https://openalex.org/W4285165731","https://openalex.org/W4313405519","https://openalex.org/W4313527067","https://openalex.org/W4318071685","https://openalex.org/W4324332956","https://openalex.org/W4366824201","https://openalex.org/W4382202967","https://openalex.org/W4384155367","https://openalex.org/W4387191019","https://openalex.org/W6739901393","https://openalex.org/W6796663048","https://openalex.org/W6796801894","https://openalex.org/W6810465265","https://openalex.org/W6853491289"],"related_works":["https://openalex.org/W17155033","https://openalex.org/W3153444835","https://openalex.org/W2153916713","https://openalex.org/W2023846184","https://openalex.org/W3207760230","https://openalex.org/W1496222301","https://openalex.org/W2703419385","https://openalex.org/W2329056228","https://openalex.org/W1590307681","https://openalex.org/W4312814274"],"abstract_inverted_index":{"Drug":[0],"substructure":[1,25,73],"plays":[2],"a":[3,31],"crucial":[4],"role":[5],"in":[6,66],"predicting":[7],"drug-drug":[8,81],"interaction":[9],"(DDI)":[10],"with":[11],"combination":[12],"drugs":[13],"for":[14,37],"disease":[15],"therapies.":[16],"In":[17],"order":[18],"to":[19,78],"exploit":[20],"the":[21,43,56,61,70,80,87],"effect":[22],"of":[23,51,63,89],"drug":[24,52],"on":[26],"DDI":[27,67,93],"prediction,":[28],"we":[29],"propose":[30],"Key":[32],"Substructure-aware":[33],"Graph":[34],"Transformer":[35,46],"Network":[36],"Drug-drug":[38],"Interaction":[39],"Prediction":[40],"(KSGTN-DDI).":[41],"First,":[42],"substructure-adaptive":[44],"graph":[45],"module":[47,59],"adaptively":[48],"explicit":[49],"encoding":[50],"structures":[53],"information.":[54],"Then,":[55],"key":[57],"substructure-aware":[58],"calculates":[60],"importance":[62],"different":[64],"substructures":[65],"prediction.":[68],"Finally,":[69],"calculated":[71],"important":[72],"aggregation":[74],"features":[75],"are":[76],"used":[77],"reconstruct":[79],"interactions.":[82],"Relevant":[83],"experiments":[84],"indicate":[85],"that":[86],"performance":[88],"KSGTN-DDI":[90],"outperforms":[91],"other":[92],"prediction":[94],"models.":[95]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
