{"id":"https://openalex.org/W4390970475","doi":"https://doi.org/10.1109/bibm58861.2023.10385778","title":"Named Entity Recognition in Italian Lung Cancer Clinical Reports using Transformers","display_name":"Named Entity Recognition in Italian Lung Cancer Clinical Reports using Transformers","publication_year":2023,"publication_date":"2023-12-05","ids":{"openalex":"https://openalex.org/W4390970475","doi":"https://doi.org/10.1109/bibm58861.2023.10385778"},"language":"en","primary_location":{"id":"doi:10.1109/bibm58861.2023.10385778","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm58861.2023.10385778","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5093735677","display_name":"Domenico Paolo","orcid":null},"institutions":[{"id":"https://openalex.org/I155125353","display_name":"Universit\u00e0 Campus Bio-Medico","ror":"https://ror.org/04gqx4x78","country_code":"IT","type":"education","lineage":["https://openalex.org/I155125353"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Domenico Paolo","raw_affiliation_strings":["Universit&#x00E0; Campus Bio-Medico di Roma,Unit of Computer Systems &amp; Bioinformatics,Department of Engineering,Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit&#x00E0; Campus Bio-Medico di Roma,Unit of Computer Systems &amp; Bioinformatics,Department of Engineering,Italy","institution_ids":["https://openalex.org/I155125353"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043790595","display_name":"Alessandro Bria","orcid":"https://orcid.org/0000-0002-2895-6544"},"institutions":[{"id":"https://openalex.org/I186995768","display_name":"Universit\u00e0 degli studi di Cassino e del Lazio Meridionale","ror":"https://ror.org/04nxkaq16","country_code":"IT","type":"education","lineage":["https://openalex.org/I186995768"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alessandro Bria","raw_affiliation_strings":["University of Cassino and Southern Latium,Department of Electrical and Information Engineering,Cassino,Italy","Department of Electrical and Information Engineering, University of Cassino and Southern Latium, Cassino, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Cassino and Southern Latium,Department of Electrical and Information Engineering,Cassino,Italy","institution_ids":["https://openalex.org/I186995768"]},{"raw_affiliation_string":"Department of Electrical and Information Engineering, University of Cassino and Southern Latium, Cassino, Italy","institution_ids":["https://openalex.org/I186995768"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005999785","display_name":"Carlo Greco","orcid":"https://orcid.org/0000-0002-1068-5045"},"institutions":[{"id":"https://openalex.org/I155125353","display_name":"Universit\u00e0 Campus Bio-Medico","ror":"https://ror.org/04gqx4x78","country_code":"IT","type":"education","lineage":["https://openalex.org/I155125353"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Carlo Greco","raw_affiliation_strings":["Universit&#x00E0; Campus Bio-Medico di Roma,Research Unit of Radiation Oncology,Department of Medicine and Surgery,Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit&#x00E0; Campus Bio-Medico di Roma,Research Unit of Radiation Oncology,Department of Medicine and Surgery,Italy","institution_ids":["https://openalex.org/I155125353"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054617465","display_name":"Marco Russano","orcid":"https://orcid.org/0000-0002-6963-3864"},"institutions":[{"id":"https://openalex.org/I4210143387","display_name":"Campus Bio Medico University Hospital","ror":"https://ror.org/04gqbd180","country_code":"IT","type":"healthcare","lineage":["https://openalex.org/I4210143387"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Russano","raw_affiliation_strings":["Fondazione Policlinico Universitario Campus Bio-Medico,Operative Research Unit of Medical Oncology,Italy","Operative Research Unit of Medical Oncology, Fondazione Policlinico Universitario Campus Bio-Medico, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fondazione Policlinico Universitario Campus Bio-Medico,Operative Research Unit of Medical Oncology,Italy","institution_ids":["https://openalex.org/I4210143387"]},{"raw_affiliation_string":"Operative Research Unit of Medical Oncology, Fondazione Policlinico Universitario Campus Bio-Medico, Italy","institution_ids":["https://openalex.org/I4210143387"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039880019","display_name":"Sara Ramella","orcid":"https://orcid.org/0000-0002-5782-7717"},"institutions":[{"id":"https://openalex.org/I155125353","display_name":"Universit\u00e0 Campus Bio-Medico","ror":"https://ror.org/04gqx4x78","country_code":"IT","type":"education","lineage":["https://openalex.org/I155125353"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Sara Ramella","raw_affiliation_strings":["Universit&#x00E0; Campus Bio-Medico di Roma,Research Unit of Radiation Oncology,Department of Medicine and Surgery,Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit&#x00E0; Campus Bio-Medico di Roma,Research Unit of Radiation Oncology,Department of Medicine and Surgery,Italy","institution_ids":["https://openalex.org/I155125353"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003216983","display_name":"Paolo Soda","orcid":"https://orcid.org/0000-0003-2621-072X"},"institutions":[{"id":"https://openalex.org/I155125353","display_name":"Universit\u00e0 Campus Bio-Medico","ror":"https://ror.org/04gqx4x78","country_code":"IT","type":"education","lineage":["https://openalex.org/I155125353"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Paolo Soda","raw_affiliation_strings":["Universit&#x00E0; Campus Bio-Medico di Roma,Unit of Computer Systems &amp; Bioinformatics,Department of Engineering,Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit&#x00E0; Campus Bio-Medico di Roma,Unit of Computer Systems &amp; Bioinformatics,Department of Engineering,Italy","institution_ids":["https://openalex.org/I155125353"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023365911","display_name":"Rosa Sicilia","orcid":"https://orcid.org/0000-0002-2513-0827"},"institutions":[{"id":"https://openalex.org/I155125353","display_name":"Universit\u00e0 Campus Bio-Medico","ror":"https://ror.org/04gqx4x78","country_code":"IT","type":"education","lineage":["https://openalex.org/I155125353"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Rosa Sicilia","raw_affiliation_strings":["Universit&#x00E0; Campus Bio-Medico di Roma,Unit of Computer Systems &amp; Bioinformatics,Department of Engineering,Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit&#x00E0; Campus Bio-Medico di Roma,Unit of Computer Systems &amp; Bioinformatics,Department of Engineering,Italy","institution_ids":["https://openalex.org/I155125353"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"4101","last_page":"4107"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.676501989364624},{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.6620694398880005},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.635518491268158},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5673814415931702},{"id":"https://openalex.org/keywords/lung-cancer","display_name":"Lung cancer","score":0.5310469269752502},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.45801419019699097},{"id":"https://openalex.org/keywords/health-records","display_name":"Health records","score":0.4312695562839508},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3909844160079956},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.22300830483436584},{"id":"https://openalex.org/keywords/health-care","display_name":"Health care","score":0.17369705438613892},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.12560701370239258},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.10777455568313599}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.676501989364624},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.6620694398880005},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.635518491268158},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5673814415931702},{"id":"https://openalex.org/C2776256026","wikidata":"https://www.wikidata.org/wiki/Q47912","display_name":"Lung cancer","level":2,"score":0.5310469269752502},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.45801419019699097},{"id":"https://openalex.org/C3019952477","wikidata":"https://www.wikidata.org/wiki/Q1324077","display_name":"Health records","level":3,"score":0.4312695562839508},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3909844160079956},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.22300830483436584},{"id":"https://openalex.org/C160735492","wikidata":"https://www.wikidata.org/wiki/Q31207","display_name":"Health care","level":2,"score":0.17369705438613892},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.12560701370239258},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.10777455568313599},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.0},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm58861.2023.10385778","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm58861.2023.10385778","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.5199999809265137,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W79139011","https://openalex.org/W2053154970","https://openalex.org/W2236169403","https://openalex.org/W2396881363","https://openalex.org/W2594685110","https://openalex.org/W2792317186","https://openalex.org/W2896457183","https://openalex.org/W2900803580","https://openalex.org/W2963351448","https://openalex.org/W3028004046","https://openalex.org/W3046375318","https://openalex.org/W3048179169","https://openalex.org/W3116359349","https://openalex.org/W3127145819","https://openalex.org/W3130583616","https://openalex.org/W3156308192","https://openalex.org/W3186583010","https://openalex.org/W3198980621","https://openalex.org/W4226332137","https://openalex.org/W4248018214","https://openalex.org/W4308772430","https://openalex.org/W4367310581","https://openalex.org/W4380355878","https://openalex.org/W4382404920","https://openalex.org/W6755207826"],"related_works":["https://openalex.org/W3115058362","https://openalex.org/W3005759282","https://openalex.org/W3017222382","https://openalex.org/W3128216712","https://openalex.org/W3136915866","https://openalex.org/W4390279576","https://openalex.org/W2886890203","https://openalex.org/W4313535650","https://openalex.org/W2287770975","https://openalex.org/W4388937418"],"abstract_inverted_index":{"The":[0],"widespread":[1],"adoption":[2],"of":[3,32,87,117,120,137,173],"electronic":[4],"health":[5],"records":[6],"(EHRs)":[7],"offers":[8],"a":[9,48,64,84,95,102,118],"valuable":[10],"opportunity":[11],"to":[12,67,76,92,111,163,176],"support":[13],"clinical":[14,73,89,115],"research":[15],"by":[16,157],"containing":[17],"crucial":[18],"patient":[19],"information,":[20],"including":[21],"diagnoses,":[22],"symptoms,":[23],"medications,":[24],"lab":[25],"tests,":[26],"and":[27,131],"more.":[28],"Despite":[29],"the":[30,41,57,112,152,158,171,181],"success":[31],"deep":[33],"learning":[34],"for":[35,56,98],"biomedical":[36,109,178],"Named":[37],"Entity":[38],"Recognition":[39],"(NER),":[40],"literature":[42],"in":[43,180],"this":[44,61],"field":[45],"still":[46],"presents":[47,63],"gap":[49],"regarding":[50],"applications":[51],"focused":[52],"on":[53,107],"lung":[54],"cancer":[55],"Italian":[58,72,108,182],"language.":[59,183],"Hence,":[60],"paper":[62],"transformer-based":[65],"approach":[66,160],"extract":[68,177],"named":[69],"entities":[70,90],"from":[71,124],"notes":[74],"related":[75,91],"Non-Small":[77],"Cell":[78],"Lung":[79],"Cancer":[80],"(NSCLC).":[81],"We":[82,100,139],"introduce":[83],"novel":[85],"set":[86],"25":[88],"NSCLC":[93],"building":[94],"corpus":[96],"annotated":[97,114],"NER.":[99],"apply":[101],"state-of":[103],"the-art":[104],"model":[105],"pre-trained":[106,147],"texts":[110],"manually":[113],"reports":[116],"cohort":[119],"257":[121],"patients":[122],"suffering":[123],"NSCLC,":[125],"successfully":[126],"dealing":[127],"with":[128,144],"class-imbalance":[129],"problems":[130],"obtaining":[132],"promising":[133],"performance":[134],"(average":[135],"F1-score":[136],"84.3%).":[138],"also":[140,169],"compared":[141],"our":[142],"method":[143],"two":[145],"other":[146],"state-of-the-art":[148],"models":[149],"showing":[150],"that":[151],"domain":[153],"specific":[154],"knowledge":[155],"offered":[156],"proposed":[159],"is":[161],"necessary":[162],"achieve":[164],"higher":[165],"performance.":[166],"These":[167],"findings":[168],"showcase":[170],"feasibility":[172],"using":[174],"transformers":[175],"information":[179]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
