{"id":"https://openalex.org/W4390992124","doi":"https://doi.org/10.1109/bibm58861.2023.10385768","title":"Research on Named Entity Recognition in Traditional Chinese Medicine Herbal Texts","display_name":"Research on Named Entity Recognition in Traditional Chinese Medicine Herbal Texts","publication_year":2023,"publication_date":"2023-12-05","ids":{"openalex":"https://openalex.org/W4390992124","doi":"https://doi.org/10.1109/bibm58861.2023.10385768"},"language":"en","primary_location":{"id":"doi:10.1109/bibm58861.2023.10385768","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385768","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007036736","display_name":"Lin Tong","orcid":"https://orcid.org/0000-0002-0845-2496"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lin Tong","raw_affiliation_strings":["China Academy of Chinese Medical Sciences,Institute of Information on Traditional Chinese Medicine,Beijing,P.R.China","Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, P.R.China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China Academy of Chinese Medical Sciences,Institute of Information on Traditional Chinese Medicine,Beijing,P.R.China","institution_ids":["https://openalex.org/I200296433"]},{"raw_affiliation_string":"Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, P.R.China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085963057","display_name":"Sihong Liu","orcid":"https://orcid.org/0000-0002-5188-5334"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sihong Liu","raw_affiliation_strings":["China Academy of Chinese Medical Sciences,Institute of Information on Traditional Chinese Medicine,Beijing,P.R.China","Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, P.R.China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China Academy of Chinese Medical Sciences,Institute of Information on Traditional Chinese Medicine,Beijing,P.R.China","institution_ids":["https://openalex.org/I200296433"]},{"raw_affiliation_string":"Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, P.R.China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062492969","display_name":"Ziling Zeng","orcid":null},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]},{"id":"https://openalex.org/I4210141683","display_name":"China Academy of Chinese Medical Sciences","ror":"https://ror.org/042pgcv68","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210141683"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ziling Zeng","raw_affiliation_strings":["China Academy of Chinese Medical Sciences,Institute of Chinese Materia Medica,Beijing,P.R.China","Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, P.R.China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China Academy of Chinese Medical Sciences,Institute of Chinese Materia Medica,Beijing,P.R.China","institution_ids":["https://openalex.org/I200296433","https://openalex.org/I4210141683"]},{"raw_affiliation_string":"Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, P.R.China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060779945","display_name":"Guangkun Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guangkun Chen","raw_affiliation_strings":["China Academy of Chinese Medical Sciences,Institute of Information on Traditional Chinese Medicine,Beijing,P.R.China","Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, P.R.China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China Academy of Chinese Medical Sciences,Institute of Information on Traditional Chinese Medicine,Beijing,P.R.China","institution_ids":["https://openalex.org/I200296433"]},{"raw_affiliation_string":"Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, P.R.China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100433696","display_name":"Yu Zhang","orcid":"https://orcid.org/0000-0003-1375-1594"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Zhang","raw_affiliation_strings":["China Academy of Chinese Medical Sciences,Institute of Information on Traditional Chinese Medicine,Beijing,P.R.China","Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, P.R.China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China Academy of Chinese Medical Sciences,Institute of Information on Traditional Chinese Medicine,Beijing,P.R.China","institution_ids":["https://openalex.org/I200296433"]},{"raw_affiliation_string":"Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, P.R.China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013810254","display_name":"Qikai Niu","orcid":"https://orcid.org/0000-0002-2828-7985"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]},{"id":"https://openalex.org/I4210141683","display_name":"China Academy of Chinese Medical Sciences","ror":"https://ror.org/042pgcv68","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210141683"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qikai Niu","raw_affiliation_strings":["China Academy of Chinese Medical Sciences,Institute of Chinese Materia Medica,Beijing,P.R.China","Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, P.R.China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China Academy of Chinese Medical Sciences,Institute of Chinese Materia Medica,Beijing,P.R.China","institution_ids":["https://openalex.org/I200296433","https://openalex.org/I4210141683"]},{"raw_affiliation_string":"Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, P.R.China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065698665","display_name":"Danping Zheng","orcid":"https://orcid.org/0000-0002-0315-1723"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Danping Zheng","raw_affiliation_strings":["China Academy of Chinese Medical Sciences,Institute of Information on Traditional Chinese Medicine,Beijing,P.R.China","Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, P.R.China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China Academy of Chinese Medical Sciences,Institute of Information on Traditional Chinese Medicine,Beijing,P.R.China","institution_ids":["https://openalex.org/I200296433"]},{"raw_affiliation_string":"Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, P.R.China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100340779","display_name":"Hongtao Li","orcid":"https://orcid.org/0000-0002-2944-8613"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongtao Li","raw_affiliation_strings":["China Academy of Chinese Medical Sciences,Institute of Information on Traditional Chinese Medicine,Beijing,P.R.China","Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, P.R.China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China Academy of Chinese Medical Sciences,Institute of Information on Traditional Chinese Medicine,Beijing,P.R.China","institution_ids":["https://openalex.org/I200296433"]},{"raw_affiliation_string":"Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, P.R.China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101492003","display_name":"Huamin Zhang","orcid":"https://orcid.org/0000-0002-7210-9203"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]},{"id":"https://openalex.org/I4210141683","display_name":"China Academy of Chinese Medical Sciences","ror":"https://ror.org/042pgcv68","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210141683"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huamin Zhang","raw_affiliation_strings":["China Academy of Chinese Medical Sciences,Institute of Basic Theory for Chinese Medicine,Beijing,P.R.China","Institute of Basic Theory for Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, P.R.China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China Academy of Chinese Medical Sciences,Institute of Basic Theory for Chinese Medicine,Beijing,P.R.China","institution_ids":["https://openalex.org/I200296433","https://openalex.org/I4210141683"]},{"raw_affiliation_string":"Institute of Basic Theory for Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, P.R.China","institution_ids":["https://openalex.org/I200296433"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100741429","display_name":"Lei Zhang","orcid":"https://orcid.org/0000-0001-7769-7377"},"institutions":[{"id":"https://openalex.org/I200296433","display_name":"Chinese Academy of Medical Sciences & Peking Union Medical College","ror":"https://ror.org/02drdmm93","country_code":"CN","type":"education","lineage":["https://openalex.org/I200296433"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Zhang","raw_affiliation_strings":["China Academy of Chinese Medical Sciences,Institute of Information on Traditional Chinese Medicine,Beijing,P.R.China","Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, P.R.China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"China Academy of Chinese Medical Sciences,Institute of Information on Traditional Chinese Medicine,Beijing,P.R.China","institution_ids":["https://openalex.org/I200296433"]},{"raw_affiliation_string":"Institute of Information on Traditional Chinese Medicine, China Academy of Chinese Medical Sciences, Beijing, P.R.China","institution_ids":["https://openalex.org/I200296433"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.2178,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.50331211,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"4636","last_page":"4639"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9632999897003174,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.8855798244476318},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7830851078033447},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7819002270698547},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.6473461389541626},{"id":"https://openalex.org/keywords/recall","display_name":"Recall","score":0.611713171005249},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5779353380203247},{"id":"https://openalex.org/keywords/named-entity","display_name":"Named entity","score":0.5765831470489502},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5619469285011292},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.5532210469245911},{"id":"https://openalex.org/keywords/entity-linking","display_name":"Entity linking","score":0.4891948699951172},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.4335176944732666},{"id":"https://openalex.org/keywords/f1-score","display_name":"F1 score","score":0.4298507273197174},{"id":"https://openalex.org/keywords/linguistics","display_name":"Linguistics","score":0.09253740310668945},{"id":"https://openalex.org/keywords/knowledge-base","display_name":"Knowledge base","score":0.08234712481498718}],"concepts":[{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.8855798244476318},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7830851078033447},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7819002270698547},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6473461389541626},{"id":"https://openalex.org/C100660578","wikidata":"https://www.wikidata.org/wiki/Q18733","display_name":"Recall","level":2,"score":0.611713171005249},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5779353380203247},{"id":"https://openalex.org/C2777889803","wikidata":"https://www.wikidata.org/wiki/Q25047676","display_name":"Named entity","level":2,"score":0.5765831470489502},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5619469285011292},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.5532210469245911},{"id":"https://openalex.org/C96711827","wikidata":"https://www.wikidata.org/wiki/Q17012245","display_name":"Entity linking","level":3,"score":0.4891948699951172},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.4335176944732666},{"id":"https://openalex.org/C148524875","wikidata":"https://www.wikidata.org/wiki/Q6975395","display_name":"F1 score","level":2,"score":0.4298507273197174},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.09253740310668945},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.08234712481498718},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm58861.2023.10385768","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385768","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.7799999713897705,"display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320334111","display_name":"Innovation Fund","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W3203549800","https://openalex.org/W4233394865","https://openalex.org/W4241047495"],"related_works":["https://openalex.org/W2186562580","https://openalex.org/W2155874911","https://openalex.org/W4255258373","https://openalex.org/W2593907245","https://openalex.org/W2032007337","https://openalex.org/W3000685722","https://openalex.org/W1884363728","https://openalex.org/W4253099099","https://openalex.org/W2757016069","https://openalex.org/W3216421539"],"abstract_inverted_index":{"Objective":[0],"To":[1],"address":[2],"the":[3,11,35,49],"issues":[4],"in":[5,10,26,44,91,119,123,131],"named":[6,78],"entity":[7,41,85],"recognition":[8,86],"(NER)":[9],"field":[12],"of":[13,37,98,102,107,117,140],"traditional":[14],"Chinese":[15],"medicine":[16],"(TCM),":[17],"this":[18],"study":[19],"proposes":[20],"a":[21,56,114,137],"method":[22,53],"for":[23,68,76,88],"identifying":[24],"entities":[25,39,90,122],"TCM":[27,92,124],"herbal":[28,45,93,125],"literature;":[29],"Methods":[30],"We":[31,47],"identify":[32],"and":[33,40,60,104],"describe":[34],"types":[36],"knowledge":[38],"relationships":[42],"involved":[43],"literature.":[46,126],"apply":[48],"BIO":[50],"sequence":[51],"labeling":[52],"to":[54],"generate":[55],"training":[57],"corpus":[58],"dataset":[59],"use":[61],"our":[62],"self-developed":[63],"CNLP":[64],"text":[65,69,141],"annotation":[66],"system":[67],"annotation.":[70],"The":[71,81,110],"Bert":[72,82,111],"model":[73,83,112,128],"is":[74,129],"employed":[75],"recognizing":[77,120],"entities;":[79],"Results":[80],"achieved":[84],"results":[87],"various":[89,121],"literature":[94],"with":[95],"precision":[96],"(P)":[97],"71.49%,":[99],"recall":[100],"(R)":[101],"72.33%,":[103],"F1":[105],"score":[106],"71.91%;":[108],"Conclusion":[109],"demonstrates":[113],"certain":[115],"level":[116],"applicability":[118],"This":[127],"helpful":[130],"extracting":[132],"valuable":[133],"structured":[134],"information":[135],"from":[136],"large":[138],"volume":[139],"data.":[142]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
