{"id":"https://openalex.org/W4390970136","doi":"https://doi.org/10.1109/bibm58861.2023.10385754","title":"MulAxialGO: Multi-Modal Feature-Enhanced Deep Learning Model for Protein Function Prediction","display_name":"MulAxialGO: Multi-Modal Feature-Enhanced Deep Learning Model for Protein Function Prediction","publication_year":2023,"publication_date":"2023-12-05","ids":{"openalex":"https://openalex.org/W4390970136","doi":"https://doi.org/10.1109/bibm58861.2023.10385754"},"language":"en","primary_location":{"id":"doi:10.1109/bibm58861.2023.10385754","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385754","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100333854","display_name":"Xun Wang","orcid":"https://orcid.org/0000-0002-2741-433X"},"institutions":[{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xun Wang","raw_affiliation_strings":["China University of Petroleum,College of Computer Science and Technology,Qingdao,China","College of Computer Science and Technology, China University of Petroleum, Qingdao, China"],"affiliations":[{"raw_affiliation_string":"China University of Petroleum,College of Computer Science and Technology,Qingdao,China","institution_ids":["https://openalex.org/I4210162190"]},{"raw_affiliation_string":"College of Computer Science and Technology, China University of Petroleum, Qingdao, China","institution_ids":["https://openalex.org/I4210162190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029438375","display_name":"Peng Qu","orcid":"https://orcid.org/0009-0005-3651-0701"},"institutions":[{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peng Qu","raw_affiliation_strings":["China University of Petroleum,College of Computer Science and Technology,Qingdao,China","College of Computer Science and Technology, China University of Petroleum, Qingdao, China"],"affiliations":[{"raw_affiliation_string":"China University of Petroleum,College of Computer Science and Technology,Qingdao,China","institution_ids":["https://openalex.org/I4210162190"]},{"raw_affiliation_string":"College of Computer Science and Technology, China University of Petroleum, Qingdao, China","institution_ids":["https://openalex.org/I4210162190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061578352","display_name":"Xiangyu Meng","orcid":"https://orcid.org/0000-0001-5696-3090"},"institutions":[{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangyu Meng","raw_affiliation_strings":["China University of Petroleum,College of Computer Science and Technology,Qingdao,China","College of Computer Science and Technology, China University of Petroleum, Qingdao, China"],"affiliations":[{"raw_affiliation_string":"China University of Petroleum,College of Computer Science and Technology,Qingdao,China","institution_ids":["https://openalex.org/I4210162190"]},{"raw_affiliation_string":"College of Computer Science and Technology, China University of Petroleum, Qingdao, China","institution_ids":["https://openalex.org/I4210162190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006185855","display_name":"Qing Yang","orcid":"https://orcid.org/0000-0003-2358-411X"},"institutions":[{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qing Yang","raw_affiliation_strings":["China University of Petroleum,College of Computer Science and Technology,Qingdao,China","College of Computer Science and Technology, China University of Petroleum, Qingdao, China"],"affiliations":[{"raw_affiliation_string":"China University of Petroleum,College of Computer Science and Technology,Qingdao,China","institution_ids":["https://openalex.org/I4210162190"]},{"raw_affiliation_string":"College of Computer Science and Technology, China University of Petroleum, Qingdao, China","institution_ids":["https://openalex.org/I4210162190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021049782","display_name":"Lian Qiao","orcid":null},"institutions":[{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lian Qiao","raw_affiliation_strings":["China University of Petroleum,College of Computer Science and Technology,Qingdao,China","College of Computer Science and Technology, China University of Petroleum, Qingdao, China"],"affiliations":[{"raw_affiliation_string":"China University of Petroleum,College of Computer Science and Technology,Qingdao,China","institution_ids":["https://openalex.org/I4210162190"]},{"raw_affiliation_string":"College of Computer Science and Technology, China University of Petroleum, Qingdao, China","institution_ids":["https://openalex.org/I4210162190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035069267","display_name":"Chaogang Zhang","orcid":"https://orcid.org/0000-0003-1298-6703"},"institutions":[{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chaogang Zhang","raw_affiliation_strings":["China University of Petroleum,College of Computer Science and Technology,Qingdao,China","College of Computer Science and Technology, China University of Petroleum, Qingdao, China"],"affiliations":[{"raw_affiliation_string":"China University of Petroleum,College of Computer Science and Technology,Qingdao,China","institution_ids":["https://openalex.org/I4210162190"]},{"raw_affiliation_string":"College of Computer Science and Technology, China University of Petroleum, Qingdao, China","institution_ids":["https://openalex.org/I4210162190"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001951336","display_name":"Xian-Jin Xie","orcid":"https://orcid.org/0000-0002-2666-6084"},"institutions":[{"id":"https://openalex.org/I4210116517","display_name":"Shandong Provincial Hospital","ror":"https://ror.org/02ar2nf05","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210116517"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xianjin Xie","raw_affiliation_strings":["Shandong Provincial Third Hospital,Jinan,China","Shandong Provincial Third Hospital, Jinan, China"],"affiliations":[{"raw_affiliation_string":"Shandong Provincial Third Hospital,Jinan,China","institution_ids":["https://openalex.org/I4210116517"]},{"raw_affiliation_string":"Shandong Provincial Third Hospital, Jinan, China","institution_ids":["https://openalex.org/I4210116517"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5100333854"],"corresponding_institution_ids":["https://openalex.org/I4210162190"],"apc_list":null,"apc_paid":null,"fwci":0.3185,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.65447291,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":96},"biblio":{"volume":"36","issue":null,"first_page":"132","last_page":"137"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7902135252952576},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6531165242195129},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.5928353071212769},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.572379469871521},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5147452354431152},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5109702348709106},{"id":"https://openalex.org/keywords/component","display_name":"Component (thermodynamics)","score":0.5087679028511047},{"id":"https://openalex.org/keywords/convolution","display_name":"Convolution (computer science)","score":0.5087471604347229},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5048649907112122},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5036675333976746},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.4861183166503906},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4289027750492096},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.24068239331245422},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.1446881890296936}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7902135252952576},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6531165242195129},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.5928353071212769},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.572379469871521},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5147452354431152},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5109702348709106},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.5087679028511047},{"id":"https://openalex.org/C45347329","wikidata":"https://www.wikidata.org/wiki/Q5166604","display_name":"Convolution (computer science)","level":3,"score":0.5087471604347229},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5048649907112122},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5036675333976746},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.4861183166503906},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4289027750492096},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.24068239331245422},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.1446881890296936},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm58861.2023.10385754","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385754","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6700000166893005,"id":"https://metadata.un.org/sdg/4","display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320324174","display_name":"Natural Science Foundation of Shandong Province","ror":null},{"id":"https://openalex.org/F4320337504","display_name":"Research and Development","ror":"https://ror.org/027s68j25"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1987134040","https://openalex.org/W2045204781","https://openalex.org/W2098432760","https://openalex.org/W2117486996","https://openalex.org/W2194775991","https://openalex.org/W2476548250","https://openalex.org/W2522417827","https://openalex.org/W2615066396","https://openalex.org/W2807567459","https://openalex.org/W2908510526","https://openalex.org/W2951282333","https://openalex.org/W2951422523","https://openalex.org/W2951731136","https://openalex.org/W2999481648","https://openalex.org/W3097065222","https://openalex.org/W3137270128","https://openalex.org/W3146944767","https://openalex.org/W3164046276","https://openalex.org/W3165795318","https://openalex.org/W3179436811","https://openalex.org/W4225687252","https://openalex.org/W4236358448","https://openalex.org/W4295312788","https://openalex.org/W4309506674","https://openalex.org/W6757817989","https://openalex.org/W6766978945"],"related_works":["https://openalex.org/W2378211422","https://openalex.org/W4321353415","https://openalex.org/W2745001401","https://openalex.org/W2130974462","https://openalex.org/W2028665553","https://openalex.org/W2086519370","https://openalex.org/W972276598","https://openalex.org/W4246352526","https://openalex.org/W2121910908","https://openalex.org/W915438175"],"abstract_inverted_index":{"Predicting":[0],"protein":[1,71,104],"function":[2,105,128],"from":[3,34,39,97],"sequences":[4],"through":[5],"machine":[6],"learning":[7],"can":[8],"improve":[9,59],"the":[10,64,75,119,144,149,154],"understanding":[11],"of":[12,67,78],"novel":[13,101],"proteins":[14],"and":[15,74,82,114,137,165],"biological":[16,132,163],"mechanisms.":[17],"Existing":[18],"methods":[19],"mainly":[20],"rely":[21],"on":[22,110,148],"one-dimensional":[23],"convolution":[24],"or":[25],"natural":[26],"language":[27,72],"processing":[28],"(NLP)":[29],"techniques":[30],"to":[31,58,94],"extract":[32,95],"features":[33,66,77,96],"sequences,":[35,98],"but":[36],"they":[37],"suffer":[38],"limited":[40],"predictive":[41],"performance.":[42],"To":[43],"address":[44],"this":[45],"challenge,":[46],"we":[47],"propose":[48],"MulAxialGO,":[49],"a":[50,68,89,100],"new":[51],"method":[52],"that":[53],"leverages":[54],"multi-modal":[55],"feature":[56,92],"fusion":[57],"prediction":[60],"accuracy.":[61],"MulAxialGO":[62,87,107,122,152],"integrates":[63],"prior":[65],"large-scale":[69],"pre-trained":[70],"model":[73],"posterior":[76],"dynamic":[79],"embedding":[80],"coding":[81],"sequence":[83],"homology.":[84],"In":[85],"addition,":[86],"employs":[88],"comprehensive":[90],"image":[91],"encoder":[93],"providing":[99],"perspective":[102],"for":[103,143,162,168],"prediction.":[106],"is":[108],"tested":[109],"two":[111],"benchmark":[112],"datasets":[113],"achieves":[115],"state-of-the-art":[116,155],"results.":[117],"On":[118],"2016":[120],"dataset,":[121,151],"significantly":[123],"outperforms":[124,153],"DeepGOPlus,":[125],"improving":[126,157],"molecular":[127],"by":[129,134,140,159],"4.5":[130],"points,":[131],"process":[133,164],"2.4":[135],"points":[136,142,161,167],"cellular":[138,169],"component":[139],"1.6":[141],"AUPR":[145],"metric.":[146],"Similarly,":[147],"NetGO":[150],"NetGO2.0,":[156],"Fmax":[158],"1.1":[160],"2.3":[166],"component.":[170]},"counts_by_year":[{"year":2024,"cited_by_count":2}],"updated_date":"2025-12-25T23:11:45.687758","created_date":"2025-10-10T00:00:00"}
