{"id":"https://openalex.org/W4390991963","doi":"https://doi.org/10.1109/bibm58861.2023.10385667","title":"Minimize Maximum Coverage of Fragment Alignment Selection","display_name":"Minimize Maximum Coverage of Fragment Alignment Selection","publication_year":2023,"publication_date":"2023-12-05","ids":{"openalex":"https://openalex.org/W4390991963","doi":"https://doi.org/10.1109/bibm58861.2023.10385667"},"language":"en","primary_location":{"id":"doi:10.1109/bibm58861.2023.10385667","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385667","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100409320","display_name":"Yuyang Wang","orcid":"https://orcid.org/0000-0001-5175-8389"},"institutions":[{"id":"https://openalex.org/I80143920","display_name":"Shandong University of Science and Technology","ror":"https://ror.org/04gtjhw98","country_code":"CN","type":"education","lineage":["https://openalex.org/I80143920"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuyang Wang","raw_affiliation_strings":["Shandong University,School of Computer Science and Technology,Qingdao,China","School of Computer Science and Technology, Shandong University, Qingdao, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shandong University,School of Computer Science and Technology,Qingdao,China","institution_ids":["https://openalex.org/I80143920"]},{"raw_affiliation_string":"School of Computer Science and Technology, Shandong University, Qingdao, China","institution_ids":["https://openalex.org/I80143920"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101498861","display_name":"Haodi Feng","orcid":"https://orcid.org/0000-0002-0656-5905"},"institutions":[{"id":"https://openalex.org/I80143920","display_name":"Shandong University of Science and Technology","ror":"https://ror.org/04gtjhw98","country_code":"CN","type":"education","lineage":["https://openalex.org/I80143920"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haodi Feng","raw_affiliation_strings":["Shandong University,School of Computer Science and Technology,Qingdao,China","School of Computer Science and Technology, Shandong University, Qingdao, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shandong University,School of Computer Science and Technology,Qingdao,China","institution_ids":["https://openalex.org/I80143920"]},{"raw_affiliation_string":"School of Computer Science and Technology, Shandong University, Qingdao, China","institution_ids":["https://openalex.org/I80143920"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101836304","display_name":"Haitao Jiang","orcid":"https://orcid.org/0000-0001-6892-5200"},"institutions":[{"id":"https://openalex.org/I80143920","display_name":"Shandong University of Science and Technology","ror":"https://ror.org/04gtjhw98","country_code":"CN","type":"education","lineage":["https://openalex.org/I80143920"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haitao Jiang","raw_affiliation_strings":["Shandong University,School of Computer Science and Technology,Qingdao,China","School of Computer Science and Technology, Shandong University, Qingdao, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shandong University,School of Computer Science and Technology,Qingdao,China","institution_ids":["https://openalex.org/I80143920"]},{"raw_affiliation_string":"School of Computer Science and Technology, Shandong University, Qingdao, China","institution_ids":["https://openalex.org/I80143920"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101769221","display_name":"Daming Zhu","orcid":"https://orcid.org/0000-0001-9395-7247"},"institutions":[{"id":"https://openalex.org/I80143920","display_name":"Shandong University of Science and Technology","ror":"https://ror.org/04gtjhw98","country_code":"CN","type":"education","lineage":["https://openalex.org/I80143920"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Daming Zhu","raw_affiliation_strings":["Shandong University,School of Computer Science and Technology,Qingdao,China","School of Computer Science and Technology, Shandong University, Qingdao, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shandong University,School of Computer Science and Technology,Qingdao,China","institution_ids":["https://openalex.org/I80143920"]},{"raw_affiliation_string":"School of Computer Science and Technology, Shandong University, Qingdao, China","institution_ids":["https://openalex.org/I80143920"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I80143920"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.25773069,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"349","last_page":"354"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fragment","display_name":"Fragment (logic)","score":0.8394858837127686},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7439588308334351},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.7030029296875},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.6226390600204468},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5887184739112854},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4684087634086609},{"id":"https://openalex.org/keywords/time-complexity","display_name":"Time complexity","score":0.4682394564151764},{"id":"https://openalex.org/keywords/base","display_name":"Base (topology)","score":0.42723801732063293},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.42631903290748596},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.42346757650375366},{"id":"https://openalex.org/keywords/computational-complexity-theory","display_name":"Computational complexity theory","score":0.4120527505874634},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.3668743371963501},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.32515883445739746},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.31067579984664917},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27912676334381104},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1622735559940338},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07394438982009888},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.06705251336097717},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.06596711277961731}],"concepts":[{"id":"https://openalex.org/C2776235265","wikidata":"https://www.wikidata.org/wiki/Q18392052","display_name":"Fragment (logic)","level":2,"score":0.8394858837127686},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7439588308334351},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.7030029296875},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.6226390600204468},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5887184739112854},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4684087634086609},{"id":"https://openalex.org/C311688","wikidata":"https://www.wikidata.org/wiki/Q2393193","display_name":"Time complexity","level":2,"score":0.4682394564151764},{"id":"https://openalex.org/C42058472","wikidata":"https://www.wikidata.org/wiki/Q810214","display_name":"Base (topology)","level":2,"score":0.42723801732063293},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.42631903290748596},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.42346757650375366},{"id":"https://openalex.org/C179799912","wikidata":"https://www.wikidata.org/wiki/Q205084","display_name":"Computational complexity theory","level":2,"score":0.4120527505874634},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.3668743371963501},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.32515883445739746},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.31067579984664917},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27912676334381104},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1622735559940338},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07394438982009888},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.06705251336097717},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.06596711277961731},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm58861.2023.10385667","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385667","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1971899779","https://openalex.org/W1973020798","https://openalex.org/W1988245212","https://openalex.org/W2003979824","https://openalex.org/W2122789575","https://openalex.org/W2140729960","https://openalex.org/W2141458291","https://openalex.org/W2177379918","https://openalex.org/W2255292617","https://openalex.org/W2768985026","https://openalex.org/W2964849163","https://openalex.org/W2995527562","https://openalex.org/W3004333847","https://openalex.org/W4205912566"],"related_works":["https://openalex.org/W2089480001","https://openalex.org/W3167837387","https://openalex.org/W2885619582","https://openalex.org/W54719527","https://openalex.org/W4250462852","https://openalex.org/W2944010518","https://openalex.org/W2993223466","https://openalex.org/W2105191441","https://openalex.org/W2589404674","https://openalex.org/W2327661880"],"abstract_inverted_index":{"In":[0],"genome/transcriptome":[1],"assembly":[2],"and":[3,13,43,135,144],"similar":[4],"scenarios,":[5],"we":[6,105],"are":[7],"usually":[8,69],"given":[9],"millions":[10],"of":[11,51,109],"fragments":[12,111],"ready":[14],"to":[15,25,35,39,81,112],"assemble":[16],"them":[17,24,143],"into":[18,86],"longer":[19],"contigs":[20],"by":[21],"first":[22],"aligning":[23],"a":[26,92],"reference":[27],"sequence.":[28],"Since":[29],"one":[30,61],"fragment":[31],"may":[32],"be":[33],"aligned":[34,114],"different":[36],"locations":[37],"due":[38],"sequence":[40],"repetition,":[41],"mutation,":[42],"artificial":[44],"factors":[45],"the":[46,71,88,98,107,122,129],"alignment":[47,52,82],"tools":[48,53],"concern,":[49],"users":[50],"must":[54],"make":[55],"their":[56],"own":[57],"strategies":[58,68],"for":[59,63,74,132,142],"choosing":[60],"location":[62,76],"each":[64,75,101],"fragment.":[65],"Commonly":[66],"used":[67],"assign":[70,78],"same":[72],"value":[73],"or":[77,138],"values":[79],"according":[80],"scores":[83],"without":[84],"taking":[85],"account":[87],"optimization.":[89],"Considering":[90],"that":[91,97,120],"reasonable":[93],"strategy":[94],"should":[95],"ensure":[96],"coverage":[99,124],"at":[100],"base":[102],"is":[103],"similar,":[104],"depict":[106],"problem":[108,119],"assigning":[110],"properly":[113],"positions":[115],"as":[116],"an":[117],"optimization":[118],"minimizes":[121],"maximum":[123],"over":[125],"all":[126],"bases,":[127],"studying":[128],"computational":[130],"complexities":[131],"some":[133,145],"cases":[134],"designing":[136],"polynomial-time":[137,140],"approximate":[139],"algorithms":[141],"others.":[146]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
