{"id":"https://openalex.org/W4390992183","doi":"https://doi.org/10.1109/bibm58861.2023.10385642","title":"Joint Biomedical Entity and Relation Extraction with Unified Interaction Maps","display_name":"Joint Biomedical Entity and Relation Extraction with Unified Interaction Maps","publication_year":2023,"publication_date":"2023-12-05","ids":{"openalex":"https://openalex.org/W4390992183","doi":"https://doi.org/10.1109/bibm58861.2023.10385642"},"language":"en","primary_location":{"id":"doi:10.1109/bibm58861.2023.10385642","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385642","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062963602","display_name":"Haixin Tan","orcid":null},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Haixin Tan","raw_affiliation_strings":["Dalian University of Technology,School of Computer Science and Technology,Dalian,China","School of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,School of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051597671","display_name":"Zhihao Yang","orcid":"https://orcid.org/0000-0001-6186-2024"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhihao Yang","raw_affiliation_strings":["Dalian University of Technology,School of Computer Science and Technology,Dalian,China","School of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,School of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057983414","display_name":"Zeyuan Ding","orcid":"https://orcid.org/0000-0002-4969-6200"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zeyuan Ding","raw_affiliation_strings":["Dalian University of Technology,School of Computer Science and Technology,Dalian,China","School of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,School of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067966140","display_name":"Zhijun Wang","orcid":"https://orcid.org/0000-0001-9401-8882"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhijun Wang","raw_affiliation_strings":["Dalian University of Technology,School of Computer Science and Technology,Dalian,China","School of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,School of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100619435","display_name":"Ling Luo","orcid":"https://orcid.org/0000-0002-5141-0259"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ling Luo","raw_affiliation_strings":["Dalian University of Technology,School of Computer Science and Technology,Dalian,China","School of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,School of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100436099","display_name":"Lei Wang","orcid":"https://orcid.org/0000-0003-1810-3019"},"institutions":[{"id":"https://openalex.org/I2802541053","display_name":"Academy of Military Medical Sciences","ror":"https://ror.org/02bv3c993","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2802541053"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Wang","raw_affiliation_strings":["Academy of Military Medical Sciences,Institute of Health Service and Transfusion Medicine,Beijing,China","Institute of Health Service and Transfusion Medicine, Academy of Military Medical Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academy of Military Medical Sciences,Institute of Health Service and Transfusion Medicine,Beijing,China","institution_ids":["https://openalex.org/I2802541053"]},{"raw_affiliation_string":"Institute of Health Service and Transfusion Medicine, Academy of Military Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I2802541053"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100343699","display_name":"Yin Zhang","orcid":"https://orcid.org/0000-0001-6986-4227"},"institutions":[{"id":"https://openalex.org/I2802541053","display_name":"Academy of Military Medical Sciences","ror":"https://ror.org/02bv3c993","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2802541053"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yin Zhang","raw_affiliation_strings":["Academy of Military Medical Sciences,Institute of Health Service and Transfusion Medicine,Beijing,China","Institute of Health Service and Transfusion Medicine, Academy of Military Medical Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academy of Military Medical Sciences,Institute of Health Service and Transfusion Medicine,Beijing,China","institution_ids":["https://openalex.org/I2802541053"]},{"raw_affiliation_string":"Institute of Health Service and Transfusion Medicine, Academy of Military Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I2802541053"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100431792","display_name":"Wei Liu","orcid":"https://orcid.org/0000-0002-3865-8145"},"institutions":[{"id":"https://openalex.org/I2802541053","display_name":"Academy of Military Medical Sciences","ror":"https://ror.org/02bv3c993","country_code":"CN","type":"facility","lineage":["https://openalex.org/I2802541053"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Liu","raw_affiliation_strings":["Academy of Military Medical Sciences,Institute of Health Service and Transfusion Medicine,Beijing,China","Institute of Health Service and Transfusion Medicine, Academy of Military Medical Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Academy of Military Medical Sciences,Institute of Health Service and Transfusion Medicine,Beijing,China","institution_ids":["https://openalex.org/I2802541053"]},{"raw_affiliation_string":"Institute of Health Service and Transfusion Medicine, Academy of Military Medical Sciences, Beijing, China","institution_ids":["https://openalex.org/I2802541053"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023931221","display_name":"Hongfei Lin","orcid":"https://orcid.org/0000-0003-0872-7688"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongfei Lin","raw_affiliation_strings":["Dalian University of Technology,School of Computer Science and Technology,Dalian,China","School of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,School of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100370452","display_name":"Jian Wang","orcid":"https://orcid.org/0000-0002-4656-7446"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Wang","raw_affiliation_strings":["Dalian University of Technology,School of Computer Science and Technology,Dalian,China","School of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,School of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1437","last_page":"1442"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10181","display_name":"Natural Language Processing Techniques","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8207642436027527},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.8010764122009277},{"id":"https://openalex.org/keywords/joint","display_name":"Joint (building)","score":0.620384931564331},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.6012652516365051},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.5320122241973877},{"id":"https://openalex.org/keywords/relation","display_name":"Relation (database)","score":0.524387538433075},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5133918523788452},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.4900108873844147},{"id":"https://openalex.org/keywords/unified-model","display_name":"Unified Model","score":0.46428099274635315},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.4273624122142792},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4012835621833801},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.38162437081336975},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3054579496383667}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8207642436027527},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.8010764122009277},{"id":"https://openalex.org/C18555067","wikidata":"https://www.wikidata.org/wiki/Q8375051","display_name":"Joint (building)","level":2,"score":0.620384931564331},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.6012652516365051},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.5320122241973877},{"id":"https://openalex.org/C25343380","wikidata":"https://www.wikidata.org/wiki/Q277521","display_name":"Relation (database)","level":2,"score":0.524387538433075},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5133918523788452},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.4900108873844147},{"id":"https://openalex.org/C45493050","wikidata":"https://www.wikidata.org/wiki/Q7884934","display_name":"Unified Model","level":2,"score":0.46428099274635315},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.4273624122142792},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4012835621833801},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.38162437081336975},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3054579496383667},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C170154142","wikidata":"https://www.wikidata.org/wiki/Q150737","display_name":"Architectural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C153294291","wikidata":"https://www.wikidata.org/wiki/Q25261","display_name":"Meteorology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm58861.2023.10385642","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385642","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4","score":0.800000011920929}],"awards":[],"funders":[{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W2170189740","https://openalex.org/W2296283641","https://openalex.org/W2800535933","https://openalex.org/W2808142148","https://openalex.org/W2887428522","https://openalex.org/W2952768212","https://openalex.org/W3004541293","https://openalex.org/W3034617555","https://openalex.org/W3046375318","https://openalex.org/W3116427155","https://openalex.org/W3165523615","https://openalex.org/W3217710765","https://openalex.org/W4283802662","https://openalex.org/W4313527270","https://openalex.org/W4385245566","https://openalex.org/W4385573940","https://openalex.org/W6691723933","https://openalex.org/W6739901393"],"related_works":["https://openalex.org/W842810586","https://openalex.org/W4319940250","https://openalex.org/W2352298027","https://openalex.org/W2092919065","https://openalex.org/W3138801416","https://openalex.org/W4236762297","https://openalex.org/W2444550338","https://openalex.org/W2369351710","https://openalex.org/W2594363579","https://openalex.org/W2169232658"],"abstract_inverted_index":{"Automatic":[0],"extraction":[1,72],"of":[2,46,97,133],"entities":[3,53],"and":[4,54,70,127],"their":[5],"relations":[6,82,98],"from":[7,43],"unstructured":[8],"literature":[9],"to":[10,92,111],"form":[11,87],"structured":[12],"triples":[13],"is":[14],"essential":[15],"for":[16,48],"biomedical":[17,33],"knowledge":[18],"construction.":[19],"Although":[20],"most":[21],"existing":[22],"joint":[23,68],"methods":[24],"have":[25],"effectively":[26],"addressed":[27],"some":[28],"challenging":[29],"problems":[30],"in":[31,83],"the":[32,36,49,84,89,94,113,119,125,131,137],"corpora,":[34],"i.e.,":[35],"prevalent":[37],"overlapping":[38,120],"issue,":[39],"they":[40],"still":[41],"suffer":[42],"a":[44,67,100],"lack":[45],"consideration":[47],"intrinsic":[50],"correlations":[51],"between":[52],"relations,":[55],"as":[56,58],"well":[57],"low":[59],"computational":[60],"efficiency.":[61,142],"In":[62,104],"this":[63],"paper,":[64],"we":[65,79,106],"present":[66],"entity":[69],"relation":[71],"model":[73],"with":[74,88,140],"unified":[75,108],"interaction":[76,109],"maps.":[77],"Specifically,":[78],"concatenate":[80],"all":[81],"natural":[85],"language":[86],"input":[90],"text":[91],"integrate":[93],"semantic":[95],"information":[96],"through":[99],"deep":[101],"Transformer-based":[102],"encoder.":[103],"addition,":[105],"apply":[107],"maps":[110],"capture":[112],"correlations,":[114],"which":[115],"can":[116],"naturally":[117],"handle":[118],"issue.":[121],"Extensive":[122],"experiments":[123],"on":[124],"CHEMPROT":[126],"DDIExtraction2013":[128],"datasets":[129],"demonstrate":[130],"effectiveness":[132],"our":[134],"model,":[135],"achieving":[136],"state-of-the-art":[138],"performance":[139],"higher":[141]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
