{"id":"https://openalex.org/W4390992025","doi":"https://doi.org/10.1109/bibm58861.2023.10385513","title":"Predicting Associations between circRNAs and Drug Sensitivity using Heterogeneous Graphs and Graph Attention Networks","display_name":"Predicting Associations between circRNAs and Drug Sensitivity using Heterogeneous Graphs and Graph Attention Networks","publication_year":2023,"publication_date":"2023-12-05","ids":{"openalex":"https://openalex.org/W4390992025","doi":"https://doi.org/10.1109/bibm58861.2023.10385513"},"language":"en","primary_location":{"id":"doi:10.1109/bibm58861.2023.10385513","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385513","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102884329","display_name":"Xiaojun Xiao","orcid":null},"institutions":[{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaojun Xiao","raw_affiliation_strings":["Xinjiang University,School of Software,Urumqi,China","School of Software, Xinjiang University, Urumqi, China"],"affiliations":[{"raw_affiliation_string":"Xinjiang University,School of Software,Urumqi,China","institution_ids":["https://openalex.org/I96908189"]},{"raw_affiliation_string":"School of Software, Xinjiang University, Urumqi, China","institution_ids":["https://openalex.org/I96908189"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002981402","display_name":"Yurong Qian","orcid":"https://orcid.org/0000-0001-6564-4745"},"institutions":[{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yurong Qian","raw_affiliation_strings":["Xinjiang University,School of Software,Urumqi,China","School of Software, Xinjiang University, Urumqi, China"],"affiliations":[{"raw_affiliation_string":"Xinjiang University,School of Software,Urumqi,China","institution_ids":["https://openalex.org/I96908189"]},{"raw_affiliation_string":"School of Software, Xinjiang University, Urumqi, China","institution_ids":["https://openalex.org/I96908189"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015986813","display_name":"Zhijian Huang","orcid":"https://orcid.org/0000-0003-1601-3802"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhijian Huang","raw_affiliation_strings":["Central South University,School of Computer Science and Engineering,Changsha,China","School of Computer Science and Engineering, Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"Central South University,School of Computer Science and Engineering,Changsha,China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102763406","display_name":"Rongtao Zheng","orcid":"https://orcid.org/0000-0002-1241-7108"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rongtao Zheng","raw_affiliation_strings":["Central South University,School of Computer Science and Engineering,Changsha,China","School of Computer Science and Engineering, Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"Central South University,School of Computer Science and Engineering,Changsha,China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113262237","display_name":"Lei Deng","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Deng","raw_affiliation_strings":["Central South University,School of Computer Science and Engineering,Changsha,China","School of Computer Science and Engineering, Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"Central South University,School of Computer Science and Engineering,Changsha,China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5102884329"],"corresponding_institution_ids":["https://openalex.org/I96908189"],"apc_list":null,"apc_paid":null,"fwci":0.1592,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.61204935,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"116","issue":null,"first_page":"191","last_page":"196"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.948199987411499,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6732888221740723},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5366349220275879},{"id":"https://openalex.org/keywords/sensitivity","display_name":"Sensitivity (control systems)","score":0.5353174209594727},{"id":"https://openalex.org/keywords/graph-embedding","display_name":"Graph embedding","score":0.46279004216194153},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4347411096096039}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6732888221740723},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5366349220275879},{"id":"https://openalex.org/C21200559","wikidata":"https://www.wikidata.org/wiki/Q7451068","display_name":"Sensitivity (control systems)","level":2,"score":0.5353174209594727},{"id":"https://openalex.org/C75564084","wikidata":"https://www.wikidata.org/wiki/Q5597085","display_name":"Graph embedding","level":3,"score":0.46279004216194153},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4347411096096039},{"id":"https://openalex.org/C24326235","wikidata":"https://www.wikidata.org/wiki/Q126095","display_name":"Electronic engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm58861.2023.10385513","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385513","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.49000000953674316,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1975147762","https://openalex.org/W1985550917","https://openalex.org/W2034269086","https://openalex.org/W2302185643","https://openalex.org/W2553897545","https://openalex.org/W2557645954","https://openalex.org/W2794160361","https://openalex.org/W2883062882","https://openalex.org/W2883797857","https://openalex.org/W2916534270","https://openalex.org/W2940071667","https://openalex.org/W2964015378","https://openalex.org/W2969715183","https://openalex.org/W3000082418","https://openalex.org/W4205736070","https://openalex.org/W4229005146","https://openalex.org/W4286795917","https://openalex.org/W4297733535","https://openalex.org/W4313707003"],"related_works":["https://openalex.org/W3149439221","https://openalex.org/W4287763734","https://openalex.org/W3035116611","https://openalex.org/W3211302945","https://openalex.org/W2932872266","https://openalex.org/W4312932141","https://openalex.org/W3094552683","https://openalex.org/W4213102553","https://openalex.org/W2939638899","https://openalex.org/W4313343743"],"abstract_inverted_index":{"Discovering":[0],"associations":[1,25,40],"between":[2,132],"circular":[3],"RNAs":[4],"(circRNAs)":[5],"and":[6,16,28,74,164,171],"cellular":[7],"drug":[8,14,90],"sensitivity":[9,59,80,134],"is":[10,41,93,135],"essential":[11],"for":[12,37],"understanding":[13],"efficacy":[15],"therapeutic":[17],"resistance.":[18],"Traditional":[19],"experimental":[20,145],"methods":[21,36,150],"to":[22,112,116,124],"verify":[23],"such":[24],"are":[26],"costly":[27],"time-consuming.":[29],"Thus,":[30],"the":[31,68,78,89,96,100,118,125,152],"development":[32],"of":[33,72,99,120,154,160],"efficient":[34],"computational":[35,50],"predicting":[38,56],"circRNA-drug":[39,58,79,133],"crucial.":[42],"In":[43],"this":[44,175],"study,":[45],"we":[46],"introduce":[47],"a":[48,63,85,103,138],"novel":[49],"predictor":[51],"called":[52],"HETACDA,":[53],"aimed":[54],"at":[55],"potential":[57],"associations.":[60],"HETACDA":[61,107],"constructs":[62],"heterogeneous":[64],"graph":[65,71,86,104],"network,":[66,88],"incorporating":[67],"characteristic":[69],"structure":[70,98],"drugs":[73],"circRNAs,":[75],"along":[76],"with":[77],"topology":[81],"graph.":[82],"By":[83],"employing":[84],"convolutional":[87],"embedding":[91],"vector":[92],"computed":[94],"from":[95],"molecular":[97],"drug.":[101],"Through":[102],"attention":[105,110],"mechanism,":[106],"assigns":[108],"distinct":[109],"weights":[111],"nodes":[113,123],"in":[114,174],"order":[115],"emphasize":[117],"contribution":[119],"various":[121],"neighborhood":[122],"central":[126],"node.":[127],"Subsequently,":[128],"an":[129],"association":[130],"score":[131],"predicted":[136],"using":[137],"three-layer":[139],"fully":[140],"connected":[141],"neural":[142],"network.":[143],"Extensive":[144],"comparisons":[146],"against":[147],"several":[148],"state-of-the-art":[149],"highlight":[151],"effectiveness":[153],"our":[155,161],"proposed":[156],"framework.":[157],"The":[158],"availability":[159],"source":[162],"code":[163],"datasets":[165],"on":[166],"GitHub":[167],"(https://github.com/xiaoxiaojun131421/HETACDA)":[168],"facilitates":[169],"replication":[170],"further":[172],"research":[173],"area.":[176]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2025-12-25T23:11:45.687758","created_date":"2025-10-10T00:00:00"}
