{"id":"https://openalex.org/W4391011450","doi":"https://doi.org/10.1109/bibm58861.2023.10385452","title":"Effective Drug Repositioning with a Novel Negative Sample Selection Algorithm","display_name":"Effective Drug Repositioning with a Novel Negative Sample Selection Algorithm","publication_year":2023,"publication_date":"2023-12-05","ids":{"openalex":"https://openalex.org/W4391011450","doi":"https://doi.org/10.1109/bibm58861.2023.10385452"},"language":"en","primary_location":{"id":"doi:10.1109/bibm58861.2023.10385452","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385452","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102538929","display_name":"Shengwei Ye","orcid":null},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shengwei Ye","raw_affiliation_strings":["Central China Normal University,Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning,Wuhan,Hubei,PR China,430079","School of Computer, Central China Normal University, Wuhan, Hubei, PR China","National Language Resources Monitoring & Research Center for Network Media, Central China Normal University, Wuhan, Hubei, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central China Normal University,Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning,Wuhan,Hubei,PR China,430079","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, Hubei, PR China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"National Language Resources Monitoring & Research Center for Network Media, Central China Normal University, Wuhan, Hubei, PR China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079405950","display_name":"Weizhong Zhao","orcid":"https://orcid.org/0000-0001-8552-6084"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weizhong Zhao","raw_affiliation_strings":["Central China Normal University,Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning,Wuhan,Hubei,PR China,430079","School of Computer, Central China Normal University, Wuhan, Hubei, PR China","National Language Resources Monitoring & Research Center for Network Media, Central China Normal University, Wuhan, Hubei, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central China Normal University,Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning,Wuhan,Hubei,PR China,430079","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, Hubei, PR China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"National Language Resources Monitoring & Research Center for Network Media, Central China Normal University, Wuhan, Hubei, PR China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100734038","display_name":"Xiaowei Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I102401767","display_name":"University of Arkansas at Little Rock","ror":"https://ror.org/04fttyv97","country_code":"US","type":"education","lineage":["https://openalex.org/I102401767"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaowei Xu","raw_affiliation_strings":["University of Arkansas at Little Rock,Department of Information Science,Little Rock,AR,USA,72204"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Arkansas at Little Rock,Department of Information Science,Little Rock,AR,USA,72204","institution_ids":["https://openalex.org/I102401767"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101496385","display_name":"Xianjun Shen","orcid":"https://orcid.org/0000-0001-5714-8848"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xianjun Shen","raw_affiliation_strings":["Central China Normal University,Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning,Wuhan,Hubei,PR China,430079","National Language Resources Monitoring & Research Center for Network Media, Central China Normal University, Wuhan, Hubei, PR China","School of Computer, Central China Normal University, Wuhan, Hubei, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central China Normal University,Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning,Wuhan,Hubei,PR China,430079","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"National Language Resources Monitoring & Research Center for Network Media, Central China Normal University, Wuhan, Hubei, PR China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, Hubei, PR China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003550654","display_name":"Xingpeng Jiang","orcid":"https://orcid.org/0000-0002-8848-9300"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xingpeng Jiang","raw_affiliation_strings":["Central China Normal University,Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning,Wuhan,Hubei,PR China,430079","National Language Resources Monitoring & Research Center for Network Media, Central China Normal University, Wuhan, Hubei, PR China","School of Computer, Central China Normal University, Wuhan, Hubei, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central China Normal University,Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning,Wuhan,Hubei,PR China,430079","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"National Language Resources Monitoring & Research Center for Network Media, Central China Normal University, Wuhan, Hubei, PR China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, Hubei, PR China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102010131","display_name":"Tingting He","orcid":"https://orcid.org/0000-0001-7523-6550"},"institutions":[{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tingting He","raw_affiliation_strings":["Central China Normal University,Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning,Wuhan,Hubei,PR China,430079","National Language Resources Monitoring & Research Center for Network Media, Central China Normal University, Wuhan, Hubei, PR China","School of Computer, Central China Normal University, Wuhan, Hubei, PR China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Central China Normal University,Hubei Provincial Key Laboratory of Artificial Intelligence and Smart Learning,Wuhan,Hubei,PR China,430079","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"National Language Resources Monitoring & Research Center for Network Media, Central China Normal University, Wuhan, Hubei, PR China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"School of Computer, Central China Normal University, Wuhan, Hubei, PR China","institution_ids":["https://openalex.org/I40963666"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"739","last_page":"744"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9625999927520752,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7824927568435669},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6179576516151428},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.5903459191322327},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5296117067337036},{"id":"https://openalex.org/keywords/counterfactual-thinking","display_name":"Counterfactual thinking","score":0.4363386631011963},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4129640460014343}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7824927568435669},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6179576516151428},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.5903459191322327},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5296117067337036},{"id":"https://openalex.org/C108650721","wikidata":"https://www.wikidata.org/wiki/Q1783253","display_name":"Counterfactual thinking","level":2,"score":0.4363386631011963},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4129640460014343},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm58861.2023.10385452","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385452","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.6000000238418579,"display_name":"Good health and well-being"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322186","display_name":"Natural Science Foundation of Hubei Province","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1522301498","https://openalex.org/W2006402375","https://openalex.org/W2062941476","https://openalex.org/W2089062036","https://openalex.org/W2753953057","https://openalex.org/W2790385355","https://openalex.org/W2896002881","https://openalex.org/W2960557205","https://openalex.org/W2963919031","https://openalex.org/W2964015378","https://openalex.org/W2979935139","https://openalex.org/W3007177975","https://openalex.org/W3012365916","https://openalex.org/W3019913914","https://openalex.org/W3021640804","https://openalex.org/W3038922487","https://openalex.org/W3044334750","https://openalex.org/W3093030756","https://openalex.org/W3093811011","https://openalex.org/W3097857367","https://openalex.org/W3126516421","https://openalex.org/W3129160290","https://openalex.org/W3192134500","https://openalex.org/W3193921017","https://openalex.org/W3198168376","https://openalex.org/W4211159010","https://openalex.org/W4385302066","https://openalex.org/W6631190155","https://openalex.org/W6726873649","https://openalex.org/W6779032261"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W4283697347"],"abstract_inverted_index":{"Drug":[0],"repositioning":[1,30],"is":[2],"the":[3,37,52,73,168,174,184,201,208,234],"process":[4],"of":[5,28,43,86,170,179,186,227,236],"identifying":[6],"potential":[7],"associations":[8],"between":[9],"approved":[10],"drugs":[11,228],"and":[12,40,54,162,229],"diseases":[13],"(DDAs)":[14],"to":[15,35,47,66,90,224],"unveil":[16],"novel":[17,127],"therapeutic":[18],"applications.":[19],"Unlike":[20],"traditional":[21],"drug":[22,29,58],"discovery":[23],"approaches,":[24],"a":[25,126,149,177,187,194,215,220],"key":[26],"advantage":[27],"lies":[31],"in":[32,50,118,141,183],"its":[33],"capacity":[34],"leverage":[36],"existing":[38],"knowledge":[39,139],"safety":[41],"profiles":[42],"established":[44],"medications,":[45],"leading":[46],"significant":[48],"reductions":[49],"both":[51],"time":[53],"costs":[55],"associated":[56,159],"with":[57,160,207],"development.":[59],"While":[60],"various":[61,156],"methods":[62],"have":[63],"been":[64],"proposed":[65,238],"address":[67],"this":[68,95,122],"challenge":[69],"using":[70],"diverse":[71],"strategies,":[72],"conventional":[74],"approach":[75],"for":[76,116,132,240],"training":[77],"DDAs":[78,109,133,161,203,241],"prediction":[79,134,216],"models":[80],"typically":[81],"relies":[82],"on":[83,193],"random":[84],"sampling":[85],"unknown":[87],"drug-disease":[88],"pairs":[89],"construct":[91,148],"negative":[92,111,128,188,211],"samples.":[93],"However,":[94],"method":[96],"may":[97],"inadvertently":[98],"introduce":[99,125],"unwanted":[100],"noise":[101],"or":[102],"errors":[103],"by":[104],"erroneously":[105],"categorizing":[106],"some":[107],"genuine":[108],"as":[110,176],"samples,":[112,212],"thereby":[113],"leaving":[114],"room":[115],"improvement":[117],"current":[119],"methodologies.":[120],"In":[121],"paper,":[123],"we":[124,146,166,213],"sample":[129,189],"selection":[130,190],"algorithm":[131,191],"that":[135,154,218],"explicitly":[136],"incorporates":[137,219],"causal":[138],"inherent":[140],"DDAs.":[142],"To":[143],"accomplish":[144],"this,":[145],"first":[147],"heterogeneous":[150],"information":[151],"network":[152],"(HIN)":[153],"encompasses":[155],"biological":[157],"entities":[158],"their":[163],"interconnections.":[164],"Subsequently,":[165],"utilize":[167],"outcomes":[169],"community":[171],"detection":[172],"within":[173],"HIN":[175],"form":[178],"counterfactual":[180,197],"inference,":[181],"resulting":[182],"development":[185],"based":[192],"thoughtfully":[195],"designed":[196],"question.":[198],"By":[199],"combining":[200],"known":[202],"(i.e.,":[204],"positive":[205],"samples)":[206],"newly":[209],"generated":[210],"train":[214],"model":[217,239],"graph":[221],"learning":[222],"module":[223],"acquire":[225],"representations":[226],"diseases.":[230],"Comprehensive":[231],"experiments":[232],"confirm":[233],"effectiveness":[235],"our":[237],"prediction.":[242]},"counts_by_year":[{"year":2024,"cited_by_count":2}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
