{"id":"https://openalex.org/W4390971181","doi":"https://doi.org/10.1109/bibm58861.2023.10385443","title":"Ranking Metrics for Genomic Regions","display_name":"Ranking Metrics for Genomic Regions","publication_year":2023,"publication_date":"2023-12-05","ids":{"openalex":"https://openalex.org/W4390971181","doi":"https://doi.org/10.1109/bibm58861.2023.10385443"},"language":"en","primary_location":{"id":"doi:10.1109/bibm58861.2023.10385443","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385443","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076812734","display_name":"Arpita Joshi","orcid":"https://orcid.org/0009-0007-1107-7424"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Arpita Joshi","raw_affiliation_strings":["Scripps Research Institute,San Diego,USA","Scripps Research Institute, San Diego, USA"],"affiliations":[{"raw_affiliation_string":"Scripps Research Institute,San Diego,USA","institution_ids":["https://openalex.org/I123431417"]},{"raw_affiliation_string":"Scripps Research Institute, San Diego, USA","institution_ids":["https://openalex.org/I123431417"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5076812734"],"corresponding_institution_ids":["https://openalex.org/I123431417"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.33821719,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"3788","last_page":"3795"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7406047582626343},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.6862809658050537},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5967602133750916},{"id":"https://openalex.org/keywords/genomic-information","display_name":"Genomic information","score":0.592708945274353},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5629685521125793},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.5426635146141052},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5149815678596497},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.45163825154304504},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.4195685386657715},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.36694520711898804},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3129348158836365},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.22565197944641113},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.12378880381584167},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11169636249542236},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.08735376596450806}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7406047582626343},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.6862809658050537},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5967602133750916},{"id":"https://openalex.org/C3020077223","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomic information","level":4,"score":0.592708945274353},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5629685521125793},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.5426635146141052},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5149815678596497},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.45163825154304504},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4195685386657715},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.36694520711898804},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3129348158836365},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.22565197944641113},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.12378880381584167},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11169636249542236},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.08735376596450806},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm58861.2023.10385443","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385443","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W1616993132","https://openalex.org/W1902027874","https://openalex.org/W2021581601","https://openalex.org/W2023342647","https://openalex.org/W2035364928","https://openalex.org/W2038774969","https://openalex.org/W2044826047","https://openalex.org/W2069870183","https://openalex.org/W2072506631","https://openalex.org/W2076854586","https://openalex.org/W2100847260","https://openalex.org/W2137393500","https://openalex.org/W2143326696","https://openalex.org/W2167898988","https://openalex.org/W2304626475","https://openalex.org/W2323326409","https://openalex.org/W2334390586","https://openalex.org/W2518559449","https://openalex.org/W2616198309","https://openalex.org/W2758965030","https://openalex.org/W2891748899","https://openalex.org/W2953067954","https://openalex.org/W3005646230","https://openalex.org/W3046013264","https://openalex.org/W3048813440","https://openalex.org/W3155499188","https://openalex.org/W3179151896","https://openalex.org/W3213620814","https://openalex.org/W4211159670","https://openalex.org/W4281626773","https://openalex.org/W4309908782","https://openalex.org/W4411543976"],"related_works":["https://openalex.org/W3160516639","https://openalex.org/W4311254203","https://openalex.org/W168477301","https://openalex.org/W4319734075","https://openalex.org/W2350202691","https://openalex.org/W2165878324","https://openalex.org/W2382315767","https://openalex.org/W2965868893","https://openalex.org/W4361268636","https://openalex.org/W2960670937"],"abstract_inverted_index":{"Mining":[0],"the":[1,56,72,101,109],"genomic":[2,57,78,91],"datasets":[3,35],"to":[4,30,38,49,54],"extract":[5],"regions":[6,58,79,92],"of":[7,24,80,88],"interest":[8,81],"is":[9],"a":[10,21,85,105],"difficult":[11],"task":[12],"and":[13,17,63],"besides":[14],"being":[15],"memory":[16],"compute":[18],"intensive,":[19],"involves":[20],"large":[22],"amount":[23],"domain":[25],"expertise.":[26],"Efficient":[27],"computational":[28],"approaches":[29],"derive":[31],"insights":[32,70],"from":[33,59],"these":[34,67],"are":[36],"imperative":[37],"their":[39],"better":[40],"understanding.":[41],"In":[42],"this":[43],"work,":[44],"we":[45],"present":[46],"an":[47],"approach":[48],"combine":[50],"information":[51,110],"theoretic":[52],"metrics":[53],"rank":[55],"two":[60],"distinct":[61],"datasets,":[62],"ultimately":[64],"show":[65],"that":[66],"metrics,":[68],"without":[69],"into":[71],"underlying":[73],"data,":[74],"not":[75],"only":[76],"capture":[77],"but":[82],"also":[83],"produce":[84],"novel":[86],"way":[87],"comparison":[89],"among":[90],"across":[93],"scales.":[94],"This":[95],"in":[96,99,112],"turn":[97],"helps":[98],"identifying":[100],"scale":[102],"at":[103],"which":[104],"given":[106],"region":[107],"maximizes":[108],"contained":[111],"it.":[113]},"counts_by_year":[],"updated_date":"2025-12-25T23:11:45.687758","created_date":"2025-10-10T00:00:00"}
