{"id":"https://openalex.org/W4390971241","doi":"https://doi.org/10.1109/bibm58861.2023.10385438","title":"OmniReprodubileCellAnalysis: a comprehensive toolbox for the analysis of cellular biology data","display_name":"OmniReprodubileCellAnalysis: a comprehensive toolbox for the analysis of cellular biology data","publication_year":2023,"publication_date":"2023-12-05","ids":{"openalex":"https://openalex.org/W4390971241","doi":"https://doi.org/10.1109/bibm58861.2023.10385438"},"language":"en","primary_location":{"id":"doi:10.1109/bibm58861.2023.10385438","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385438","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080261896","display_name":"Dora Tortarolo","orcid":"https://orcid.org/0000-0002-0897-0269"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Dora Tortarolo","raw_affiliation_strings":["University of Turin,Department of Computer Science,Turin,Italy","Department of Computer Science, University of Turin, Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Turin,Department of Computer Science,Turin,Italy","institution_ids":["https://openalex.org/I55143463"]},{"raw_affiliation_string":"Department of Computer Science, University of Turin, Turin, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082219669","display_name":"Simone Pernice","orcid":"https://orcid.org/0000-0001-7124-4676"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Simone Pernice","raw_affiliation_strings":["University of Turin,Department of Computer Science,Turin,Italy","Department of Computer Science, University of Turin, Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Turin,Department of Computer Science,Turin,Italy","institution_ids":["https://openalex.org/I55143463"]},{"raw_affiliation_string":"Department of Computer Science, University of Turin, Turin, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040214907","display_name":"Fabiana Clapero","orcid":"https://orcid.org/0000-0002-4070-2942"},"institutions":[{"id":"https://openalex.org/I4210151091","display_name":"Candiolo Cancer Institute","ror":"https://ror.org/04wadq306","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210151091","https://openalex.org/I4210153126","https://openalex.org/I4210167100"]},{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Fabiana Clapero","raw_affiliation_strings":["University of Turin,Candiolo Cancer Institute (IRCCS) Fondazione Del Piemonte per l'Oncologia (FPO),Department of Oncology,Turin,Italy","Department of Oncology, Candiolo Cancer Institute (IRCCS) Fondazione Del Piemonte per l'Oncologia (FPO), University of Turin, Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Turin,Candiolo Cancer Institute (IRCCS) Fondazione Del Piemonte per l'Oncologia (FPO),Department of Oncology,Turin,Italy","institution_ids":["https://openalex.org/I4210151091"]},{"raw_affiliation_string":"Department of Oncology, Candiolo Cancer Institute (IRCCS) Fondazione Del Piemonte per l'Oncologia (FPO), University of Turin, Turin, Italy","institution_ids":["https://openalex.org/I4210151091","https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032450940","display_name":"Donatella Valdembri","orcid":"https://orcid.org/0000-0003-4590-417X"},"institutions":[{"id":"https://openalex.org/I4210151091","display_name":"Candiolo Cancer Institute","ror":"https://ror.org/04wadq306","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210151091","https://openalex.org/I4210153126","https://openalex.org/I4210167100"]},{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Donatella Valdembri","raw_affiliation_strings":["University of Turin,Candiolo Cancer Institute (IRCCS) Fondazione Del Piemonte per l'Oncologia (FPO),Department of Oncology,Turin,Italy","Department of Oncology, Candiolo Cancer Institute (IRCCS) Fondazione Del Piemonte per l'Oncologia (FPO), University of Turin, Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Turin,Candiolo Cancer Institute (IRCCS) Fondazione Del Piemonte per l'Oncologia (FPO),Department of Oncology,Turin,Italy","institution_ids":["https://openalex.org/I4210151091"]},{"raw_affiliation_string":"Department of Oncology, Candiolo Cancer Institute (IRCCS) Fondazione Del Piemonte per l'Oncologia (FPO), University of Turin, Turin, Italy","institution_ids":["https://openalex.org/I4210151091","https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046908569","display_name":"Guido Serini","orcid":"https://orcid.org/0000-0002-3502-8367"},"institutions":[{"id":"https://openalex.org/I4210151091","display_name":"Candiolo Cancer Institute","ror":"https://ror.org/04wadq306","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210151091","https://openalex.org/I4210153126","https://openalex.org/I4210167100"]},{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Guido Serini","raw_affiliation_strings":["University of Turin,Candiolo Cancer Institute (IRCCS) Fondazione Del Piemonte per l'Oncologia (FPO),Department of Oncology,Turin,Italy","Department of Oncology, Candiolo Cancer Institute (IRCCS) Fondazione Del Piemonte per l'Oncologia (FPO), University of Turin, Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Turin,Candiolo Cancer Institute (IRCCS) Fondazione Del Piemonte per l'Oncologia (FPO),Department of Oncology,Turin,Italy","institution_ids":["https://openalex.org/I4210151091"]},{"raw_affiliation_string":"Department of Oncology, Candiolo Cancer Institute (IRCCS) Fondazione Del Piemonte per l'Oncologia (FPO), University of Turin, Turin, Italy","institution_ids":["https://openalex.org/I4210151091","https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078282084","display_name":"Federica Riccardo","orcid":"https://orcid.org/0000-0002-9692-0172"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Federica Riccardo","raw_affiliation_strings":["University of Turin,Department of Molecular Biotechnology and Health Sciences,Turin,Italy","Department of Molecular Biotechnology and Health Sciences, University of Turin, Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Turin,Department of Molecular Biotechnology and Health Sciences,Turin,Italy","institution_ids":["https://openalex.org/I55143463"]},{"raw_affiliation_string":"Department of Molecular Biotechnology and Health Sciences, University of Turin, Turin, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085720311","display_name":"Lidia Tarone","orcid":"https://orcid.org/0000-0003-2376-636X"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Lidia Tarone","raw_affiliation_strings":["University of Turin,Department of Molecular Biotechnology and Health Sciences,Turin,Italy","Department of Molecular Biotechnology and Health Sciences, University of Turin, Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Turin,Department of Molecular Biotechnology and Health Sciences,Turin,Italy","institution_ids":["https://openalex.org/I55143463"]},{"raw_affiliation_string":"Department of Molecular Biotechnology and Health Sciences, University of Turin, Turin, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024324489","display_name":"Chiara Enrico Bena","orcid":"https://orcid.org/0000-0002-3526-2858"},"institutions":[{"id":"https://openalex.org/I4210123319","display_name":"Italian institute for Genomic Medicine","ror":"https://ror.org/036054d36","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210123319"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Chiara Enrico Bena","raw_affiliation_strings":["Italian Institute for Genomic Medicine,Turin,Italy","Italian Institute for Genomic Medicine, Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Italian Institute for Genomic Medicine,Turin,Italy","institution_ids":["https://openalex.org/I4210123319"]},{"raw_affiliation_string":"Italian Institute for Genomic Medicine, Turin, Italy","institution_ids":["https://openalex.org/I4210123319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063962222","display_name":"Carla Bosia","orcid":"https://orcid.org/0000-0002-8960-3443"},"institutions":[{"id":"https://openalex.org/I177477856","display_name":"Politecnico di Torino","ror":"https://ror.org/00bgk9508","country_code":"IT","type":"education","lineage":["https://openalex.org/I177477856"]},{"id":"https://openalex.org/I4210123319","display_name":"Italian institute for Genomic Medicine","ror":"https://ror.org/036054d36","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210123319"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Carla Bosia","raw_affiliation_strings":["Italian Institute for Genomic Medicine,Turin,Italy","Department of Applied Science and Technology, Polytechnic University of Turin, Turin, Italy","Italian Institute for Genomic Medicine, Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Italian Institute for Genomic Medicine,Turin,Italy","institution_ids":["https://openalex.org/I4210123319"]},{"raw_affiliation_string":"Department of Applied Science and Technology, Polytechnic University of Turin, Turin, Italy","institution_ids":["https://openalex.org/I177477856"]},{"raw_affiliation_string":"Italian Institute for Genomic Medicine, Turin, Italy","institution_ids":["https://openalex.org/I4210123319"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086053123","display_name":"Sandro Gepiro Contaldo","orcid":"https://orcid.org/0009-0007-3889-8644"},"institutions":[{"id":"https://openalex.org/I123338534","display_name":"Universit\u00e0 degli Studi del Piemonte Orientale \u201cAmedeo Avogadro\u201d","ror":"https://ror.org/04387x656","country_code":"IT","type":"education","lineage":["https://openalex.org/I123338534"]},{"id":"https://openalex.org/I4210156869","display_name":"Piedmont University","ror":"https://ror.org/05x1g5662","country_code":"US","type":"education","lineage":["https://openalex.org/I4210156869"]}],"countries":["IT","US"],"is_corresponding":false,"raw_author_name":"Sandro Gepiro Contaldo","raw_affiliation_strings":["University of Eastern Piedmont,Computer Science Institute DiSIT,Alessandria,Italy","Computer Science Institute DiSIT, University of Eastern Piedmont, Alessandria, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Eastern Piedmont,Computer Science Institute DiSIT,Alessandria,Italy","institution_ids":["https://openalex.org/I123338534","https://openalex.org/I4210156869"]},{"raw_affiliation_string":"Computer Science Institute DiSIT, University of Eastern Piedmont, Alessandria, Italy","institution_ids":["https://openalex.org/I123338534"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002392135","display_name":"Marco Beccuti","orcid":"https://orcid.org/0000-0001-6125-9460"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Beccuti","raw_affiliation_strings":["University of Turin,Department of Computer Science,Turin,Italy","Department of Computer Science, University of Turin, Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Turin,Department of Computer Science,Turin,Italy","institution_ids":["https://openalex.org/I55143463"]},{"raw_affiliation_string":"Department of Computer Science, University of Turin, Turin, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003874484","display_name":"Marzio Pennisi","orcid":"https://orcid.org/0000-0003-0231-7653"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marzio Pennisi","raw_affiliation_strings":["University of Turin,Department of Computer Science,Turin,Italy","Department of Computer Science, University of Turin, Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Turin,Department of Computer Science,Turin,Italy","institution_ids":["https://openalex.org/I55143463"]},{"raw_affiliation_string":"Department of Computer Science, University of Turin, Turin, Italy","institution_ids":["https://openalex.org/I55143463"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064773200","display_name":"Francesca Cordero","orcid":"https://orcid.org/0000-0002-3143-3330"},"institutions":[{"id":"https://openalex.org/I55143463","display_name":"University of Turin","ror":"https://ror.org/048tbm396","country_code":"IT","type":"education","lineage":["https://openalex.org/I55143463"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Francesca Cordero","raw_affiliation_strings":["University of Turin,Department of Computer Science,Turin,Italy","Department of Computer Science, University of Turin, Turin, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Turin,Department of Computer Science,Turin,Italy","institution_ids":["https://openalex.org/I55143463"]},{"raw_affiliation_string":"Department of Computer Science, University of Turin, Turin, Italy","institution_ids":["https://openalex.org/I55143463"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":13,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.3318,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.78236279,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9843000173568726,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6333577632904053},{"id":"https://openalex.org/keywords/open-science","display_name":"Open science","score":0.6134617924690247},{"id":"https://openalex.org/keywords/open-data","display_name":"Open data","score":0.5683395266532898},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5651079416275024},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.5650873184204102},{"id":"https://openalex.org/keywords/transparency","display_name":"Transparency (behavior)","score":0.535452127456665},{"id":"https://openalex.org/keywords/reproducibility","display_name":"Reproducibility","score":0.5092841386795044},{"id":"https://openalex.org/keywords/software-portability","display_name":"Software portability","score":0.44926851987838745},{"id":"https://openalex.org/keywords/data-sharing","display_name":"Data sharing","score":0.42575377225875854},{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.4169132709503174},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.4109008014202118},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3366800546646118},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.13241592049598694},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.12116694450378418},{"id":"https://openalex.org/keywords/computer-security","display_name":"Computer security","score":0.08667248487472534}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6333577632904053},{"id":"https://openalex.org/C2778149293","wikidata":"https://www.wikidata.org/wiki/Q309823","display_name":"Open science","level":2,"score":0.6134617924690247},{"id":"https://openalex.org/C2780535194","wikidata":"https://www.wikidata.org/wiki/Q309901","display_name":"Open data","level":2,"score":0.5683395266532898},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5651079416275024},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.5650873184204102},{"id":"https://openalex.org/C2780233690","wikidata":"https://www.wikidata.org/wiki/Q535347","display_name":"Transparency (behavior)","level":2,"score":0.535452127456665},{"id":"https://openalex.org/C9893847","wikidata":"https://www.wikidata.org/wiki/Q1425625","display_name":"Reproducibility","level":2,"score":0.5092841386795044},{"id":"https://openalex.org/C63000827","wikidata":"https://www.wikidata.org/wiki/Q3080428","display_name":"Software portability","level":2,"score":0.44926851987838745},{"id":"https://openalex.org/C2779965156","wikidata":"https://www.wikidata.org/wiki/Q5227350","display_name":"Data sharing","level":3,"score":0.42575377225875854},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.4169132709503174},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.4109008014202118},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3366800546646118},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.13241592049598694},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.12116694450378418},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.08667248487472534},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C1276947","wikidata":"https://www.wikidata.org/wiki/Q333","display_name":"Astronomy","level":1,"score":0.0},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm58861.2023.10385438","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385438","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321781","display_name":"Ministero della Salute","ror":"https://ror.org/00789fa95"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1592986776","https://openalex.org/W1987777080","https://openalex.org/W2042952122","https://openalex.org/W2067833766","https://openalex.org/W2107277218","https://openalex.org/W2121780454","https://openalex.org/W2191243614","https://openalex.org/W2302501749","https://openalex.org/W2406493898","https://openalex.org/W3012838233","https://openalex.org/W3085033147","https://openalex.org/W3121991495","https://openalex.org/W4380319227","https://openalex.org/W4385813925"],"related_works":["https://openalex.org/W2400751427","https://openalex.org/W2482697570","https://openalex.org/W2345835657","https://openalex.org/W2738396072","https://openalex.org/W4229077818","https://openalex.org/W4285196440","https://openalex.org/W4390554521","https://openalex.org/W3017109063","https://openalex.org/W4308015514","https://openalex.org/W2188588845"],"abstract_inverted_index":{"Open":[0,12,264],"science":[1,13,70,77],"and":[2,18,21,28,41,50,61,71,86,107,123,135,137,144,176,182,202,206,213,222,237,251,266],"reproducibility":[3,72,91,100],"are":[4],"two":[5],"key":[6],"pillars":[7],"of":[8,63,92,101,114,120,126,163],"modern":[9],"scientific":[10,16,26,64,102,241],"research.":[11,93],"is":[14,36,53,73,180],"making":[15],"research":[17,43,103,146,260],"data":[19,128,200,210,221,227,238],"accessible":[20],"transparent":[22],"to":[23,39,138,218],"the":[24,29,33,37,47,59,90,99,112,117,124,130,160,198,226],"broader":[25],"community":[27],"public.":[30],"Reproducibility,":[31],"on":[32,225],"other":[34],"hand,":[35],"ability":[38],"replicate":[40],"confirm":[42],"results":[44,223],"by":[45,184],"following":[46],"same":[48],"methods":[49,118],"procedures.":[51],"Reproducibility":[52],"thus":[54],"crucial":[55],"because":[56],"it":[57],"ensures":[58],"reliability":[60],"validity":[62],"findings.":[65],"The":[66],"relationship":[67],"between":[68],"open":[69,76,143],"intertwined;":[74],"indeed":[75,108],"practices,":[78],"such":[79],"as":[80],"sharing":[81],"raw":[82,127,220],"data,":[83],"detailed":[84],"methodologies,":[85],"code,":[87],"greatly":[88],"facilitate":[89],"In":[94],"recent":[95],"years,":[96],"concerns":[97],"about":[98],"have":[104],"gained":[105],"prominence,":[106],"scientists":[109,185,245],"still":[110],"lament":[111],"lack":[113],"details":[115],"in":[116,157,240],"sections":[119],"published":[121],"papers":[122],"unavailability":[125],"from":[129],"authors.To":[131],"assist":[132],"cellular":[133],"biologists":[134],"immunologists":[136],"promote":[139],"a":[140,152,195,231,256,259],"more":[141],"transparent,":[142],"reproducible":[145],"practice,":[147],"we":[148],"developed":[149],"OmniReproducibleCellAnalysis":[150],"(ORCA),":[151],"new":[153],"Shiny":[154],"Application":[155],"based":[156],"R,":[158],"for":[159,234],"semi-automated":[161],"analysis":[162,201,211,249],"Western":[164],"Blot":[165],"(WB),":[166],"Reverse":[167],"Transcription-quantitative":[168],"PCR":[169],"(RT-qPCR),":[170],"Enzyme-Linked":[171],"ImmunoSorbent":[172],"Assay":[173],"(ELISA),":[174],"Endocytosis":[175],"Cytotoxicity":[177],"experiments.":[178],"ORCA":[179,216],"open-source":[181],"approachable":[183],"without":[186],"advanced":[187],"R":[188],"language":[189],"knowledge.":[190],"Our":[191],"application":[192],"automatically":[193],"compiles":[194],"report":[196],"containing":[197],"finalized":[199],"all":[203],"its":[204],"preliminary":[205],"intermediate":[207],"steps,":[208],"ensuring":[209],"standardization":[212],"reproducibility.":[214],"Furthermore,":[215],"allows":[217],"upload":[219],"directly":[224],"repository":[228],"Harvard":[229],"Dataverse,":[230],"valuable":[232],"tool":[233],"promoting":[235],"transparency":[236],"accessibility":[239],"research.By":[242],"employing":[243],"ORCA,":[244],"will":[246],"cut":[247],"down":[248],"time":[250],"human-dependent":[252],"errors,":[253],"while":[254],"taking":[255],"step":[257],"towards":[258],"practice":[261],"compliant":[262],"with":[263],"Science":[265],"FAIR":[267],"principle.":[268]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
