{"id":"https://openalex.org/W4390970055","doi":"https://doi.org/10.1109/bibm58861.2023.10385433","title":"SIMPL - An Application for Cell and Microbe Tracking Using Machine Learning","display_name":"SIMPL - An Application for Cell and Microbe Tracking Using Machine Learning","publication_year":2023,"publication_date":"2023-12-05","ids":{"openalex":"https://openalex.org/W4390970055","doi":"https://doi.org/10.1109/bibm58861.2023.10385433"},"language":"en","primary_location":{"id":"doi:10.1109/bibm58861.2023.10385433","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385433","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5109675170","display_name":"Samuel Haas","orcid":null},"institutions":[{"id":"https://openalex.org/I189957204","display_name":"University of South Dakota","ror":"https://ror.org/0043h8f16","country_code":"US","type":"education","lineage":["https://openalex.org/I189957204"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Samuel Haas","raw_affiliation_strings":["University of South Dakota,Dept. of Biomedical Engineering,Vermillion,SD,USA","Dept. of Biomedical Engineering, University of South Dakota, Vermillion, SD, USA"],"affiliations":[{"raw_affiliation_string":"University of South Dakota,Dept. of Biomedical Engineering,Vermillion,SD,USA","institution_ids":["https://openalex.org/I189957204"]},{"raw_affiliation_string":"Dept. of Biomedical Engineering, University of South Dakota, Vermillion, SD, USA","institution_ids":["https://openalex.org/I189957204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091622645","display_name":"Bichar Dip Shrestha Gurung","orcid":"https://orcid.org/0000-0002-9818-5108"},"institutions":[{"id":"https://openalex.org/I189957204","display_name":"University of South Dakota","ror":"https://ror.org/0043h8f16","country_code":"US","type":"education","lineage":["https://openalex.org/I189957204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bichar Dip Shrestha Gurung","raw_affiliation_strings":["University of South Dakota,Dept. of Biomedical Engineering,Vermillion,SD,USA","Dept. of Biomedical Engineering, University of South Dakota, Vermillion, SD, USA"],"affiliations":[{"raw_affiliation_string":"University of South Dakota,Dept. of Biomedical Engineering,Vermillion,SD,USA","institution_ids":["https://openalex.org/I189957204"]},{"raw_affiliation_string":"Dept. of Biomedical Engineering, University of South Dakota, Vermillion, SD, USA","institution_ids":["https://openalex.org/I189957204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005279080","display_name":"Timothy W. Hartman","orcid":"https://orcid.org/0000-0002-4127-9672"},"institutions":[{"id":"https://openalex.org/I189957204","display_name":"University of South Dakota","ror":"https://ror.org/0043h8f16","country_code":"US","type":"education","lineage":["https://openalex.org/I189957204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Timothy W. Hartman","raw_affiliation_strings":["University of South Dakota,Dept. of Biomedical Engineering,Vermillion,SD,USA","Dept. of Biomedical Engineering, University of South Dakota, Vermillion, SD, USA"],"affiliations":[{"raw_affiliation_string":"University of South Dakota,Dept. of Biomedical Engineering,Vermillion,SD,USA","institution_ids":["https://openalex.org/I189957204"]},{"raw_affiliation_string":"Dept. of Biomedical Engineering, University of South Dakota, Vermillion, SD, USA","institution_ids":["https://openalex.org/I189957204"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036103687","display_name":"Tuyen Do","orcid":"https://orcid.org/0000-0002-1817-4565"},"institutions":[{"id":"https://openalex.org/I189957204","display_name":"University of South Dakota","ror":"https://ror.org/0043h8f16","country_code":"US","type":"education","lineage":["https://openalex.org/I189957204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tuyen Do","raw_affiliation_strings":["University of South Dakota,Dept. of Biomedical Engineering,Vermillion,SD,USA","Dept. of Biomedical Engineering, University of South Dakota, Vermillion, SD, USA"],"affiliations":[{"raw_affiliation_string":"University of South Dakota,Dept. of Biomedical Engineering,Vermillion,SD,USA","institution_ids":["https://openalex.org/I189957204"]},{"raw_affiliation_string":"Dept. of Biomedical Engineering, University of South Dakota, Vermillion, SD, USA","institution_ids":["https://openalex.org/I189957204"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003549657","display_name":"Etienne Z. Gnimpi\u00e9ba","orcid":"https://orcid.org/0000-0002-5338-084X"},"institutions":[{"id":"https://openalex.org/I189957204","display_name":"University of South Dakota","ror":"https://ror.org/0043h8f16","country_code":"US","type":"education","lineage":["https://openalex.org/I189957204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Etienne Z. Gnimpieba","raw_affiliation_strings":["University of South Dakota,Dept. of Biomedical Engineering,Vermillion,SD,USA","Dept. of Biomedical Engineering, University of South Dakota, Vermillion, SD, USA"],"affiliations":[{"raw_affiliation_string":"University of South Dakota,Dept. of Biomedical Engineering,Vermillion,SD,USA","institution_ids":["https://openalex.org/I189957204"]},{"raw_affiliation_string":"Dept. of Biomedical Engineering, University of South Dakota, Vermillion, SD, USA","institution_ids":["https://openalex.org/I189957204"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5109675170"],"corresponding_institution_ids":["https://openalex.org/I189957204"],"apc_list":null,"apc_paid":null,"fwci":0.3661,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.78728405,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"4503","last_page":"4505"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7731484174728394},{"id":"https://openalex.org/keywords/bridge","display_name":"Bridge (graph theory)","score":0.655724048614502},{"id":"https://openalex.org/keywords/tracking","display_name":"Tracking (education)","score":0.6326395273208618},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5667508840560913},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.512215793132782},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.5040468573570251},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.49455568194389343},{"id":"https://openalex.org/keywords/micrograph","display_name":"Micrograph","score":0.41952162981033325},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1107558012008667},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.09589964151382446},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.07057344913482666}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7731484174728394},{"id":"https://openalex.org/C100776233","wikidata":"https://www.wikidata.org/wiki/Q2532492","display_name":"Bridge (graph theory)","level":2,"score":0.655724048614502},{"id":"https://openalex.org/C2775936607","wikidata":"https://www.wikidata.org/wiki/Q466845","display_name":"Tracking (education)","level":2,"score":0.6326395273208618},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5667508840560913},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.512215793132782},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.5040468573570251},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.49455568194389343},{"id":"https://openalex.org/C185891055","wikidata":"https://www.wikidata.org/wiki/Q130416","display_name":"Micrograph","level":3,"score":0.41952162981033325},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1107558012008667},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.09589964151382446},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.07057344913482666},{"id":"https://openalex.org/C26771246","wikidata":"https://www.wikidata.org/wiki/Q321095","display_name":"Scanning electron microscope","level":2,"score":0.0},{"id":"https://openalex.org/C159985019","wikidata":"https://www.wikidata.org/wiki/Q181790","display_name":"Composite material","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm58861.2023.10385433","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385433","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W2032503622","https://openalex.org/W2883693400","https://openalex.org/W3039170035","https://openalex.org/W3207206249","https://openalex.org/W4206912948","https://openalex.org/W4313452880","https://openalex.org/W4313525413","https://openalex.org/W6930038684"],"related_works":["https://openalex.org/W1995167955","https://openalex.org/W2061145700","https://openalex.org/W2035511487","https://openalex.org/W2354306524","https://openalex.org/W1633689880","https://openalex.org/W1501776718","https://openalex.org/W2615136228","https://openalex.org/W657108774","https://openalex.org/W2500605282","https://openalex.org/W2158788032"],"abstract_inverted_index":{"In":[0],"the":[1,9,45,74],"ever-evolving":[2],"landscape":[3],"of":[4,11,48,76],"research":[5],"and":[6,15,37,51,63,67],"clinical":[7],"practices,":[8],"role":[10],"microscope-based":[12],"image":[13,62],"capture":[14],"analysis":[16,25],"cannot":[17],"be":[18],"overstated.":[19],"While":[20],"current":[21],"methodologies":[22],"for":[23,61,80],"micrograph":[24],"offer":[26],"substantial":[27],"power,":[28],"there":[29],"exist":[30],"critical":[31],"gaps,":[32,42],"particularly":[33],"in":[34],"user":[35],"functionality":[36],"reproducibility.":[38],"To":[39],"bridge":[40],"these":[41],"we":[43],"introduce":[44],"Smart":[46],"Imaging":[47],"Micrographs":[49],"Process":[50],"Labeling":[52],"(SIMPL)":[53],"system":[54],"as":[55],"an":[56],"open-source,":[57],"semi-automated":[58],"framework":[59],"designed":[60],"video":[64],"capture,":[65],"analysis,":[66],"particle":[68],"tracking.":[69,83],"SIMPL":[70],"aims":[71],"to":[72],"meet":[73],"demands":[75],"high-throughput":[77],"applications,":[78],"especially":[79],"reproducible":[81],"microbe":[82]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2025-12-25T23:11:45.687758","created_date":"2025-10-10T00:00:00"}