{"id":"https://openalex.org/W4390970078","doi":"https://doi.org/10.1109/bibm58861.2023.10385399","title":"CLPiDA: A Contrastive Learning Approach for Predicting Potential PiRNA-Disease Associations","display_name":"CLPiDA: A Contrastive Learning Approach for Predicting Potential PiRNA-Disease Associations","publication_year":2023,"publication_date":"2023-12-05","ids":{"openalex":"https://openalex.org/W4390970078","doi":"https://doi.org/10.1109/bibm58861.2023.10385399"},"language":"en","primary_location":{"id":"doi:10.1109/bibm58861.2023.10385399","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm58861.2023.10385399","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101610203","display_name":"Xiaowen Hu","orcid":"https://orcid.org/0000-0002-7339-3007"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaowen Hu","raw_affiliation_strings":["Central South University,School of Computer Science and Engineering,Changsha,China","School of Computer Science and Engineering, Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"Central South University,School of Computer Science and Engineering,Changsha,China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052229178","display_name":"Yuanpeng Zhang","orcid":"https://orcid.org/0000-0003-1736-3425"},"institutions":[{"id":"https://openalex.org/I96908189","display_name":"Xinjiang University","ror":"https://ror.org/059gw8r13","country_code":"CN","type":"education","lineage":["https://openalex.org/I96908189"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuanpeng Zhang","raw_affiliation_strings":["Xinjiang University,School of Software,Urumqi,China","School of Software, Xinjiang University, Urumqi, China"],"affiliations":[{"raw_affiliation_string":"Xinjiang University,School of Software,Urumqi,China","institution_ids":["https://openalex.org/I96908189"]},{"raw_affiliation_string":"School of Software, Xinjiang University, Urumqi, China","institution_ids":["https://openalex.org/I96908189"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100628892","display_name":"Jiaxuan Zhang","orcid":"https://orcid.org/0009-0005-1931-2244"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiaxuan Zhang","raw_affiliation_strings":["University of California,Department of Electrical and Computer Engineering,San Diego,CA,United States","Department of Electrical and Computer Engineering, University of California, San Diego, CA, United States"],"affiliations":[{"raw_affiliation_string":"University of California,Department of Electrical and Computer Engineering,San Diego,CA,United States","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of California, San Diego, CA, United States","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113262237","display_name":"Lei Deng","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Deng","raw_affiliation_strings":["Central South University,School of Computer Science and Engineering,Changsha,China","School of Computer Science and Engineering, Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"Central South University,School of Computer Science and Engineering,Changsha,China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5101610203"],"corresponding_institution_ids":["https://openalex.org/I139660479"],"apc_list":null,"apc_paid":null,"fwci":0.3189,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.65459818,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"159","last_page":"164"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6657633781433105},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.47326257824897766},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.41067641973495483},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1623033583164215},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.07806187868118286}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6657633781433105},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.47326257824897766},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.41067641973495483},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1623033583164215},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.07806187868118286}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm58861.2023.10385399","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm58861.2023.10385399","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1970769181","https://openalex.org/W1977733607","https://openalex.org/W1985863431","https://openalex.org/W2047988520","https://openalex.org/W2095705004","https://openalex.org/W2106029302","https://openalex.org/W2579869402","https://openalex.org/W2766585573","https://openalex.org/W2771972353","https://openalex.org/W2903232440","https://openalex.org/W2910471371","https://openalex.org/W2966349991","https://openalex.org/W2970192475","https://openalex.org/W3000082418","https://openalex.org/W3013787003","https://openalex.org/W3014506286","https://openalex.org/W3025373576","https://openalex.org/W3035060554","https://openalex.org/W3041819458","https://openalex.org/W3045200674","https://openalex.org/W3046022368","https://openalex.org/W3080501980","https://openalex.org/W3082883165","https://openalex.org/W3097503632","https://openalex.org/W3156135334","https://openalex.org/W3156636935","https://openalex.org/W3158889654","https://openalex.org/W3171007011","https://openalex.org/W3188958746","https://openalex.org/W4205940173","https://openalex.org/W4206711189","https://openalex.org/W4212774754","https://openalex.org/W4220796987","https://openalex.org/W4291618428","https://openalex.org/W4307440230","https://openalex.org/W4311860121","https://openalex.org/W4320857183","https://openalex.org/W4323974793","https://openalex.org/W4378952262","https://openalex.org/W4381046896","https://openalex.org/W4381433853","https://openalex.org/W6674330103","https://openalex.org/W6779326418"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052","https://openalex.org/W4402327032","https://openalex.org/W2382290278"],"abstract_inverted_index":{"Piwi-interacting":[0],"RNAs":[1],"(piRNAs)":[2],"function":[3],"as":[4,167],"critical":[5],"regulators,":[6],"safeguarding":[7],"genome":[8],"stability":[9,18],"through":[10],"mechanisms":[11],"like":[12],"transposable":[13],"element":[14],"repression":[15],"and":[16,69,78,86,108,127,146,183],"gene":[17],"maintenance,":[19],"while":[20,43],"also":[21],"being":[22],"associated":[23],"with":[24,90],"various":[25],"disease":[26],"pathways.":[27],"Developing":[28],"computationally":[29],"efficient":[30],"methods":[31],"to":[32,72,94,120],"predict":[33],"piRNA-disease":[34,58,111,173],"associations":[35],"is":[36],"vital":[37],"for":[38,55,67,76,106,124,171,178,186],"enhancing":[39,147],"disease-specific":[40],"drug":[41],"discovery":[42],"managing":[44],"costs.":[45],"In":[46],"this":[47],"study,":[48],"we":[49],"present":[50],"CLPiDA,":[51],"a":[52,83,96,117,132,168],"novel":[53,133],"method":[54],"predicting":[56,172],"potential":[57],"associations.":[59],"CLPiDA":[60,115,130,187],"begins":[61],"by":[62,135],"computing":[63],"gaussian":[64],"kernel":[65],"similarities":[66],"piRNA-piRNA":[68],"disease-disease":[70],"pairs":[71],"establish":[73],"initial":[74],"embeddings":[75,105],"piRNAs":[77,107,126],"diseases.":[79,128],"Subsequently,":[80],"it":[81],"employs":[82,116],"parameter-sharing":[84],"online":[85],"target":[87],"network,":[88],"along":[89],"data":[91,182],"augmentation":[92],"techniques,":[93],"create":[95],"contrastive":[97],"learning":[98],"framework.":[99],"This":[100],"facilitates":[101],"the":[102,141],"generation":[103],"of":[104,143,157],"diseases":[109],"using":[110],"association":[112,122],"pairs.":[113],"Furthermore,":[114],"cross-prediction":[118],"approach":[119,134],"determine":[121],"scores":[123],"specific":[125],"Notably,":[129],"introduces":[131],"excluding":[136],"negative":[137],"samples,":[138],"thereby":[139],"avoiding":[140],"introduction":[142],"false":[144],"negatives":[145],"its":[148],"reliability.":[149],"Comparative":[150],"experiments":[151],"validate":[152],"CLPiDA\u2019s":[153,165],"superiority":[154],"in":[155],"terms":[156],"performance":[158],"over":[159],"existing":[160],"methods.":[161],"Case":[162],"studies":[163],"underscore":[164],"efficacy":[166],"valuable":[169,176],"tool":[170],"associations,":[174],"providing":[175],"insights":[177],"biological":[179],"experiments.":[180],"The":[181],"source":[184],"code":[185],"are":[188],"available":[189],"at":[190],"https://github.com/altriavin/CLPiDA.":[191]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
