{"id":"https://openalex.org/W4390992309","doi":"https://doi.org/10.1109/bibm58861.2023.10385338","title":"The interaction between mutated DYRK1A and APP suggests a potential target for vascular cognitive impairment","display_name":"The interaction between mutated DYRK1A and APP suggests a potential target for vascular cognitive impairment","publication_year":2023,"publication_date":"2023-12-05","ids":{"openalex":"https://openalex.org/W4390992309","doi":"https://doi.org/10.1109/bibm58861.2023.10385338"},"language":"en","primary_location":{"id":"doi:10.1109/bibm58861.2023.10385338","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385338","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016811881","display_name":"Melisa Ece Zeylan","orcid":"https://orcid.org/0000-0001-8133-8940"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Melisa Ece Zeylan","raw_affiliation_strings":["Ko&#x00E7; University,Computational Sciences and Engineering,Istanbul,T&#x00FC;rkiye"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ko&#x00E7; University,Computational Sciences and Engineering,Istanbul,T&#x00FC;rkiye","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027150821","display_name":"Simge Senyuz","orcid":"https://orcid.org/0000-0003-1945-2288"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Simge Senyuz","raw_affiliation_strings":["Ko&#x00E7; University,Computational Sciences and Engineering,Istanbul,T&#x00FC;rkiye"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ko&#x00E7; University,Computational Sciences and Engineering,Istanbul,T&#x00FC;rkiye","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057115991","display_name":"\u00d6zlem Keskin","orcid":"https://orcid.org/0000-0002-4202-4049"},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Ozlem Keskin","raw_affiliation_strings":["Ko&#x00E7; University,Department of Chemical and Biological Engineering,Istanbul,T&#x00FC;rkiye"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ko&#x00E7; University,Department of Chemical and Biological Engineering,Istanbul,T&#x00FC;rkiye","institution_ids":["https://openalex.org/I1351752"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036278069","display_name":"Attila G\u00fcrsoy","orcid":"https://orcid.org/0000-0002-2297-2113"},"institutions":[{"id":"https://openalex.org/I1351752","display_name":"Ko\u00e7 University","ror":"https://ror.org/00jzwgz36","country_code":"TR","type":"education","lineage":["https://openalex.org/I1351752"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Attila Gursoy","raw_affiliation_strings":["Ko&#x00E7; University,Department of Computer Engineering,Istanbul,T&#x00FC;rkiye"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ko&#x00E7; University,Department of Computer Engineering,Istanbul,T&#x00FC;rkiye","institution_ids":["https://openalex.org/I1351752"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.198,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.58601148,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"7"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10009","display_name":"Dementia and Cognitive Impairment Research","score":0.8550000190734863,"subfield":{"id":"https://openalex.org/subfields/2738","display_name":"Psychiatry and Mental health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10009","display_name":"Dementia and Cognitive Impairment Research","score":0.8550000190734863,"subfield":{"id":"https://openalex.org/subfields/2738","display_name":"Psychiatry and Mental health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10085","display_name":"Parkinson's Disease Mechanisms and Treatments","score":0.8082000017166138,"subfield":{"id":"https://openalex.org/subfields/2728","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7694000005722046,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dementia","display_name":"Dementia","score":0.6015275120735168},{"id":"https://openalex.org/keywords/dyrk1a","display_name":"DYRK1A","score":0.5899226069450378},{"id":"https://openalex.org/keywords/cognition","display_name":"Cognition","score":0.5151252150535583},{"id":"https://openalex.org/keywords/cognitive-impairment","display_name":"Cognitive impairment","score":0.511025071144104},{"id":"https://openalex.org/keywords/vascular-dementia","display_name":"Vascular dementia","score":0.45761483907699585},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.4549103379249573},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4515015184879303},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.4110870957374573},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37187767028808594},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.35795843601226807},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.35327982902526855},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.34325724840164185},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.3393945097923279},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3074922263622284},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.28409066796302795},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.27348893880844116}],"concepts":[{"id":"https://openalex.org/C2779483572","wikidata":"https://www.wikidata.org/wiki/Q83030","display_name":"Dementia","level":3,"score":0.6015275120735168},{"id":"https://openalex.org/C2777736865","wikidata":"https://www.wikidata.org/wiki/Q17915111","display_name":"DYRK1A","level":3,"score":0.5899226069450378},{"id":"https://openalex.org/C169900460","wikidata":"https://www.wikidata.org/wiki/Q2200417","display_name":"Cognition","level":2,"score":0.5151252150535583},{"id":"https://openalex.org/C2984915365","wikidata":"https://www.wikidata.org/wiki/Q5141203","display_name":"Cognitive impairment","level":3,"score":0.511025071144104},{"id":"https://openalex.org/C2777952318","wikidata":"https://www.wikidata.org/wiki/Q583908","display_name":"Vascular dementia","level":4,"score":0.45761483907699585},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4549103379249573},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4515015184879303},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.4110870957374573},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37187767028808594},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.35795843601226807},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.35327982902526855},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.34325724840164185},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.3393945097923279},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3074922263622284},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.28409066796302795},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.27348893880844116},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm58861.2023.10385338","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385338","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.6399999856948853,"display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1590499183","https://openalex.org/W2132022337","https://openalex.org/W2147018385","https://openalex.org/W2152762793","https://openalex.org/W2158945625","https://openalex.org/W2499374973","https://openalex.org/W2899621494","https://openalex.org/W2921141022","https://openalex.org/W2936759108","https://openalex.org/W2977466910","https://openalex.org/W2990435446","https://openalex.org/W3107527779","https://openalex.org/W3126406108","https://openalex.org/W4200368767","https://openalex.org/W4206005395","https://openalex.org/W4206037517","https://openalex.org/W4210612558","https://openalex.org/W4284968170","https://openalex.org/W4309506674","https://openalex.org/W4385612013"],"related_works":["https://openalex.org/W2965100217","https://openalex.org/W2394014176","https://openalex.org/W1988395535","https://openalex.org/W1767261720","https://openalex.org/W48976734","https://openalex.org/W2128478833","https://openalex.org/W3178684802","https://openalex.org/W3031256058","https://openalex.org/W2506441839","https://openalex.org/W2423234176"],"abstract_inverted_index":{"Vascular":[0,41],"cognitive":[1,20],"impairment,":[2],"being":[3],"a":[4,17,91],"cerebrovascular":[5],"condition":[6],"that":[7,38,95,103,117],"is":[8,34],"more":[9,106],"common":[10],"in":[11,16,19,40,120],"the":[12,25,51,54,78,121],"aging":[13],"population,":[14],"results":[15],"deterioration":[18],"capacities.":[21],"Regarding":[22],"these":[23,85],"aspects,":[24],"identification":[26],"of":[27,53,93],"associated":[28],"proteins,":[29],"pathways,":[30],"and":[31,101,111,126],"treatment":[32],"targets":[33],"crucial.":[35],"The":[36],"interactions":[37,71,86,94],"result":[39],"Cognitive":[42],"Impairment":[43],"can":[44],"be":[45,97,129],"better":[46],"understood":[47],"by":[48,72],"looking":[49],"into":[50],"interactors":[52],"well-researched":[55],"APP,":[56],"which":[57],"has":[58],"been":[59],"linked":[60],"to":[61,99,108],"dementia.":[62],"Therefore,":[63],"our":[64],"study":[65],"focused":[66],"on":[67],"identifying":[68],"novel":[69],"APP":[70,104],"protein-protein":[73],"interaction":[74,135],"networks.":[75],"After":[76],"constructing":[77],"APP-centered":[79],"dynamic-structural":[80],"PPI":[81],"network":[82],"we":[83,115],"investigated":[84],"with":[87,136],"PRISM.":[88],"We":[89],"suggested":[90],"number":[92],"could":[96],"relevant":[98],"VCI":[100,132],"found":[102],"binds":[105],"selectively":[107],"SORT1,":[109],"MAPK8,":[110],"UBQLN1":[112],"proteins.":[113],"Additionally,":[114],"propose":[116],"three":[118],"mutations":[119],"kinase":[122],"DYRK1A":[123],"(V165I,":[124],"S337P,":[125],"D401G)":[127],"may":[128],"essential":[130],"for":[131],"through":[133],"its":[134],"APP.":[137]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
