{"id":"https://openalex.org/W4390971234","doi":"https://doi.org/10.1109/bibm58861.2023.10385314","title":"Bayesian Approach Integrating Prior Knowledge for Identifying miRNA-mRNA Interactions in Hepatocellular Carcinoma","display_name":"Bayesian Approach Integrating Prior Knowledge for Identifying miRNA-mRNA Interactions in Hepatocellular Carcinoma","publication_year":2023,"publication_date":"2023-12-05","ids":{"openalex":"https://openalex.org/W4390971234","doi":"https://doi.org/10.1109/bibm58861.2023.10385314","pmid":"https://pubmed.ncbi.nlm.nih.gov/40395739"},"language":"en","primary_location":{"id":"doi:10.1109/bibm58861.2023.10385314","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385314","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12090934/pdf/nihms-2081417.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100693807","display_name":"Yichen Guo","orcid":"https://orcid.org/0009-0000-0721-4763"},"institutions":[{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]},{"id":"https://openalex.org/I2799903593","display_name":"Georgetown University Medical Center","ror":"https://ror.org/00hjz7x27","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799903593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yichen Guo","raw_affiliation_strings":["Georgetown University Medical Center,Lombardi Comprehensive Cancer Center,Washington,D.C,United States","Lombardi Comprehensive Cancer Center, Georgetown University Medical Center, Washington, D.C, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Georgetown University Medical Center,Lombardi Comprehensive Cancer Center,Washington,D.C,United States","institution_ids":["https://openalex.org/I2799903593","https://openalex.org/I184565670"]},{"raw_affiliation_string":"Lombardi Comprehensive Cancer Center, Georgetown University Medical Center, Washington, D.C, United States","institution_ids":["https://openalex.org/I2799903593","https://openalex.org/I184565670"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026116157","display_name":"Marie Denis","orcid":"https://orcid.org/0000-0002-1693-9894"},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I4210120904","display_name":"Am\u00e9lioration G\u00e9n\u00e9tique et Adaptation des Plantes m\u00e9diterran\u00e9ennes et tropicales","ror":"https://ror.org/02w4exq36","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210120904","https://openalex.org/I4399657933"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marie Denis","raw_affiliation_strings":["CIRAD, UMR AGAP Institut,Montpellier,France","CIRAD, UMR AGAP Institut, Montpellier, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIRAD, UMR AGAP Institut,Montpellier,France","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I4210120904"]},{"raw_affiliation_string":"CIRAD, UMR AGAP Institut, Montpellier, France","institution_ids":["https://openalex.org/I4210120904","https://openalex.org/I131077856"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027269811","display_name":"Rency S. Varghese","orcid":"https://orcid.org/0000-0002-4236-7316"},"institutions":[{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]},{"id":"https://openalex.org/I2799903593","display_name":"Georgetown University Medical Center","ror":"https://ror.org/00hjz7x27","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799903593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rency S. Varghese","raw_affiliation_strings":["Georgetown University Medical Center,Lombardi Comprehensive Cancer Center,Washington,D.C,United States","Lombardi Comprehensive Cancer Center, Georgetown University Medical Center, Washington, D.C, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Georgetown University Medical Center,Lombardi Comprehensive Cancer Center,Washington,D.C,United States","institution_ids":["https://openalex.org/I2799903593","https://openalex.org/I184565670"]},{"raw_affiliation_string":"Lombardi Comprehensive Cancer Center, Georgetown University Medical Center, Washington, D.C, United States","institution_ids":["https://openalex.org/I2799903593","https://openalex.org/I184565670"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017490809","display_name":"Sidharth Jain","orcid":"https://orcid.org/0000-0002-6263-651X"},"institutions":[{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]},{"id":"https://openalex.org/I2799903593","display_name":"Georgetown University Medical Center","ror":"https://ror.org/00hjz7x27","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799903593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sidharth S. Jain","raw_affiliation_strings":["Georgetown University Medical Center,Lombardi Comprehensive Cancer Center,Washington,D.C,United States","Lombardi Comprehensive Cancer Center, Georgetown University Medical Center, Washington, D.C, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Georgetown University Medical Center,Lombardi Comprehensive Cancer Center,Washington,D.C,United States","institution_ids":["https://openalex.org/I2799903593","https://openalex.org/I184565670"]},{"raw_affiliation_string":"Lombardi Comprehensive Cancer Center, Georgetown University Medical Center, Washington, D.C, United States","institution_ids":["https://openalex.org/I2799903593","https://openalex.org/I184565670"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086793581","display_name":"Mahlet G. Tadesse","orcid":"https://orcid.org/0000-0003-2671-1663"},"institutions":[{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mahlet G. Tadesse","raw_affiliation_strings":["Georgetown University,Dept. of Mathematics and Statistics,Washington,D.C,United States","Dept. of Mathematics and Statistics, Georgetown University, Washington, D.C, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Georgetown University,Dept. of Mathematics and Statistics,Washington,D.C,United States","institution_ids":["https://openalex.org/I184565670"]},{"raw_affiliation_string":"Dept. of Mathematics and Statistics, Georgetown University, Washington, D.C, United States","institution_ids":["https://openalex.org/I184565670"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025125310","display_name":"Habtom W. Ressom","orcid":"https://orcid.org/0000-0001-9296-2132"},"institutions":[{"id":"https://openalex.org/I184565670","display_name":"Georgetown University","ror":"https://ror.org/05vzafd60","country_code":"US","type":"education","lineage":["https://openalex.org/I184565670"]},{"id":"https://openalex.org/I2799903593","display_name":"Georgetown University Medical Center","ror":"https://ror.org/00hjz7x27","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2799903593"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Habtom W. Ressom","raw_affiliation_strings":["Georgetown University Medical Center,Lombardi Comprehensive Cancer Center,Washington,D.C,United States","Lombardi Comprehensive Cancer Center, Georgetown University Medical Center, Washington, D.C, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Georgetown University Medical Center,Lombardi Comprehensive Cancer Center,Washington,D.C,United States","institution_ids":["https://openalex.org/I2799903593","https://openalex.org/I184565670"]},{"raw_affiliation_string":"Lombardi Comprehensive Cancer Center, Georgetown University Medical Center, Washington, D.C, United States","institution_ids":["https://openalex.org/I2799903593","https://openalex.org/I184565670"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.54103607,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"13","issue":null,"first_page":"3768","last_page":"3774"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hepatocellular-carcinoma","display_name":"Hepatocellular carcinoma","score":0.7920882105827332},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.6836179494857788},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5714616179466248},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.5187042355537415},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45694077014923096},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.45189738273620605},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.29450714588165283},{"id":"https://openalex.org/keywords/cancer-research","display_name":"Cancer research","score":0.2860661745071411},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20039579272270203},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11329993605613708},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0736401379108429}],"concepts":[{"id":"https://openalex.org/C2778019345","wikidata":"https://www.wikidata.org/wiki/Q1148337","display_name":"Hepatocellular carcinoma","level":2,"score":0.7920882105827332},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.6836179494857788},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5714616179466248},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.5187042355537415},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45694077014923096},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.45189738273620605},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.29450714588165283},{"id":"https://openalex.org/C502942594","wikidata":"https://www.wikidata.org/wiki/Q3421914","display_name":"Cancer research","level":1,"score":0.2860661745071411},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20039579272270203},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11329993605613708},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0736401379108429}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1109/bibm58861.2023.10385314","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm58861.2023.10385314","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},{"id":"pmid:40395739","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40395739","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. IEEE International Conference on Bioinformatics and Biomedicine","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:12090934","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12090934","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12090934/pdf/nihms-2081417.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings (IEEE Int Conf Bioinformatics Biomed)","raw_type":"Text"},{"id":"pmh:oai:HAL:hal-05182494v1","is_oa":false,"landing_page_url":"https://hal.science/hal-05182494","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"International Conference on Bioinformatics and Biomedicine (BIBM), IEEE, Dec 2024, Istanbul, Turkey. pp.3768-3774, &#x27E8;10.1109/BIBM58861.2023.10385314&#x27E9;","raw_type":"Conference papers"},{"id":"pmh:oai:agritrop.cirad.fr:611035","is_oa":false,"landing_page_url":"http://agritrop.cirad.fr/611035/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402311","display_name":"Agritrop (Cirad)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I131077856","host_organization_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","host_organization_lineage":["https://openalex.org/I131077856"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:12090934","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/12090934","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC12090934/pdf/nihms-2081417.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings (IEEE Int Conf Bioinformatics Biomed)","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3915867167","display_name":null,"funder_award_id":"R35GM141944","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5253305630","display_name":"Innovative Statistical modelling for a better Understanding of Longitudinal multivariate responses in relation to Omic datasets","funder_award_id":"840383","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G6020673968","display_name":null,"funder_award_id":"R35GM141944","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4390971234.pdf","grobid_xml":"https://content.openalex.org/works/W4390971234.grobid-xml"},"referenced_works_count":19,"referenced_works":["https://openalex.org/W229097380","https://openalex.org/W1567728150","https://openalex.org/W1915506416","https://openalex.org/W1966327575","https://openalex.org/W1999974018","https://openalex.org/W2044849026","https://openalex.org/W2060110090","https://openalex.org/W2161503024","https://openalex.org/W2162143298","https://openalex.org/W2169101662","https://openalex.org/W2471394863","https://openalex.org/W2895926103","https://openalex.org/W3011726037","https://openalex.org/W4238253035","https://openalex.org/W4294329053","https://openalex.org/W4294975516","https://openalex.org/W4308834893","https://openalex.org/W4399551143","https://openalex.org/W6678604968"],"related_works":["https://openalex.org/W2417822880","https://openalex.org/W628600844","https://openalex.org/W1570838273","https://openalex.org/W2410885201","https://openalex.org/W2385390897","https://openalex.org/W3172842848","https://openalex.org/W2418745692","https://openalex.org/W2404951810","https://openalex.org/W2800415451","https://openalex.org/W2337719538"],"abstract_inverted_index":{"Oncogenesis,":[0],"a":[1,19,101,125,159,170,201],"complex":[2],"and":[3,26,37,124,150,179,183,208,221],"multifaceted":[4],"process,":[5],"is":[6],"profoundly":[7],"modulated":[8],"by":[9,147],"miRNA's":[10],"regulatory":[11,75],"role":[12],"in":[13,84,108,275],"gene":[14,143,163,174,181],"expression.":[15],"Over":[16],"the":[17,42,47,57,79,85,109,151,206,216,222,230,240,262,270],"years,":[18],"substantial":[20],"body":[21],"of":[22,44,49,64,73,82,88,100,133,173,210,232,264,272],"knowledge":[23,72,149],"concerning":[24],"miRNA":[25,185],"mRNA":[27],"has":[28],"been":[29],"accumulated,":[30],"drawing":[31],"from":[32,238],"both":[33],"rigorous":[34],"biological":[35,202,265],"experiments":[36],"intricate":[38],"statistical":[39,45],"analyses.":[40],"In":[41,235],"realm":[43],"modeling,":[46],"integration":[48],"such":[50],"information":[51],"as":[52,257],"\"prior":[53],"knowledge\"":[54],"often":[55],"amplifies":[56],"model's":[58],"ability":[59],"to":[60,69,77,196,229],"pinpoint":[61],"molecular":[62],"targets":[63],"significance.":[65],"This":[66,111,155],"study":[67],"seeks":[68],"leverage":[70],"prior":[71,134,148,246,253],"miRNA-mRNA":[74],"interactions":[76,83],"map":[78],"dynamic":[80],"landscape":[81],"specific":[86],"context":[87],"hepatocellular":[89],"carcinoma":[90],"(HCC).":[91],"To":[92],"address":[93],"this,":[94],"we":[95,139],"introduce":[96,193],"an":[97,194,251,258],"evolved":[98],"iteration":[99],"Bayesian":[102],"two-step":[103],"integrative":[104],"method":[105],"previously":[106],"established":[107],"literature.":[110],"augmented":[112],"approach":[113,195],"includes":[114],"improved":[115],"computing":[116],"efficiency":[117],"when":[118],"dealing":[119],"with":[120,187],"high":[121],"dimensional":[122],"data":[123],"novel":[126],"mechanistic":[127],"submodel,":[128],"which":[129],"operates":[130],"autonomously,":[131],"devoid":[132],"knowledge.":[135],"Employing":[136],"this":[137,248],"method,":[138],"identified":[140,211],"two":[141,188],"discrete":[142],"lists:":[144],"one":[145],"informed":[146],"other":[152],"independently":[153],"inferred.":[154],"bifurcated":[156],"strategy":[157],"provides":[158],"comprehensive":[160],"perspective":[161],"on":[162],"interactions.":[164],"Our":[165],"methodological":[166,273],"advancement":[167],"allows":[168],"for":[169,267],"nuanced":[171],"analysis":[172],"networks,":[175],"distinguishing":[176],"between":[177],"direct":[178],"indirect":[180],"relationships":[182],"considering":[184],"influences":[186],"available":[189],"sub-mechanistic":[190,242,255],"submodels.":[191],"We":[192],"validate":[197],"our":[198,233],"findings":[199],"using":[200],"interaction":[203],"network,":[204],"emphasizing":[205],"quality":[207],"relevance":[209],"gene-gene":[212],"relationships.":[213],"Metrics":[214],"like":[215],"Matthews":[217],"Correlation":[218],"Coefficient":[219],"(MCC)":[220],"true":[223],"discovery":[224],"rate":[225],"(TDR)":[226],"further":[227],"attest":[228],"robustness":[231],"findings.":[234],"summation,":[236],"aside":[237],"improving":[239],"existing":[241],"model":[243,256],"that":[244],"requires":[245],"knowledge,":[247],"paper":[249],"presents":[250],"innovative":[252],"knowledge-free":[254],"alternative.":[259],"It":[260],"champions":[261],"use":[263],"networks":[266],"validation,":[268],"underscoring":[269],"significance":[271],"advancements":[274],"genomics":[276],"research.":[277]},"counts_by_year":[],"updated_date":"2026-06-19T17:40:00.097472","created_date":"2025-10-10T00:00:00"}
