{"id":"https://openalex.org/W4313526612","doi":"https://doi.org/10.1109/bibm55620.2022.9995532","title":"Explainable Pulmonary Disease Diagnosis with Prompt-Based Knowledge Extraction","display_name":"Explainable Pulmonary Disease Diagnosis with Prompt-Based Knowledge Extraction","publication_year":2022,"publication_date":"2022-12-06","ids":{"openalex":"https://openalex.org/W4313526612","doi":"https://doi.org/10.1109/bibm55620.2022.9995532"},"language":"en","primary_location":{"id":"doi:10.1109/bibm55620.2022.9995532","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm55620.2022.9995532","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059498267","display_name":"Haodi Zhang","orcid":"https://orcid.org/0000-0001-8470-7246"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Haodi Zhang","raw_affiliation_strings":["Shenzhen University,College of Computer Science and Software Engineering,Shenzhen,China","College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"Shenzhen University,College of Computer Science and Software Engineering,Shenzhen,China","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035358869","display_name":"Chenyu Xu","orcid":"https://orcid.org/0000-0002-5385-2173"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenyu Xu","raw_affiliation_strings":["Shenzhen University,College of Computer Science and Software Engineering,Shenzhen,China","Guangdong Second Provincial General Hospital, Institute for Healthcare Artificial Intelligence Application, Guangzhou, China","College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"Shenzhen University,College of Computer Science and Software Engineering,Shenzhen,China","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"Guangdong Second Provincial General Hospital, Institute for Healthcare Artificial Intelligence Application, Guangzhou, China","institution_ids":[]},{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100658797","display_name":"Jiahong Li","orcid":"https://orcid.org/0000-0002-2347-9478"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiahong Li","raw_affiliation_strings":["Shenzhen University,College of Computer Science and Software Engineering,Shenzhen,China","College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"Shenzhen University,College of Computer Science and Software Engineering,Shenzhen,China","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028170209","display_name":"Peirou Liang","orcid":null},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peirou Liang","raw_affiliation_strings":["Shenzhen University,College of Computer Science and Software Engineering,Shenzhen,China","College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"Shenzhen University,College of Computer Science and Software Engineering,Shenzhen,China","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101695668","display_name":"Xiangyu Zeng","orcid":"https://orcid.org/0000-0002-9614-4230"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangyu Zeng","raw_affiliation_strings":["Shenzhen University,College of Computer Science and Software Engineering,Shenzhen,China","College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"Shenzhen University,College of Computer Science and Software Engineering,Shenzhen,China","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028294527","display_name":"Hao Ren","orcid":"https://orcid.org/0000-0001-7909-3753"},"institutions":[{"id":"https://openalex.org/I4210153930","display_name":"Guangdong Provincial People's Hospital","ror":"https://ror.org/045kpgw45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210153930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hao Ren","raw_affiliation_strings":["Institute for Healthcare Artificial Intelligence Application,Guangdong Second Provincial General Hospital,Guangzhou,China","Guangdong Second Provincial General Hospital, Institute for Healthcare Artificial Intelligence Application, Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"Institute for Healthcare Artificial Intelligence Application,Guangdong Second Provincial General Hospital,Guangzhou,China","institution_ids":["https://openalex.org/I4210153930"]},{"raw_affiliation_string":"Guangdong Second Provincial General Hospital, Institute for Healthcare Artificial Intelligence Application, Guangzhou, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073234967","display_name":"Weibin Cheng","orcid":"https://orcid.org/0000-0002-9845-6676"},"institutions":[{"id":"https://openalex.org/I4210153930","display_name":"Guangdong Provincial People's Hospital","ror":"https://ror.org/045kpgw45","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210153930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weibin Cheng","raw_affiliation_strings":["Institute for Healthcare Artificial Intelligence Application,Guangdong Second Provincial General Hospital,Guangzhou,China","Guangdong Second Provincial General Hospital, Institute for Healthcare Artificial Intelligence Application, Guangzhou, China"],"affiliations":[{"raw_affiliation_string":"Institute for Healthcare Artificial Intelligence Application,Guangdong Second Provincial General Hospital,Guangzhou,China","institution_ids":["https://openalex.org/I4210153930"]},{"raw_affiliation_string":"Guangdong Second Provincial General Hospital, Institute for Healthcare Artificial Intelligence Application, Guangzhou, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001188748","display_name":"Kaishun Wu","orcid":"https://orcid.org/0000-0003-2216-0737"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kaishun Wu","raw_affiliation_strings":["Shenzhen University,College of Computer Science and Software Engineering,Shenzhen,China","College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China"],"affiliations":[{"raw_affiliation_string":"Shenzhen University,College of Computer Science and Software Engineering,Shenzhen,China","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, China","institution_ids":["https://openalex.org/I180726961"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5059498267"],"corresponding_institution_ids":["https://openalex.org/I180726961"],"apc_list":null,"apc_paid":null,"fwci":0.2079,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.45044172,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"4","issue":null,"first_page":"1816","last_page":"1819"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9761000275611877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.952312171459198},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8022757768630981},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6632652282714844},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6338207125663757},{"id":"https://openalex.org/keywords/domain-knowledge","display_name":"Domain knowledge","score":0.6110978126525879},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5385308265686035},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.5363484621047974},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.46122485399246216},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"Knowledge extraction","score":0.4543560743331909},{"id":"https://openalex.org/keywords/black-box","display_name":"Black box","score":0.4401075839996338},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.4191960394382477},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3652041554450989},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3095548748970032}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.952312171459198},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8022757768630981},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6632652282714844},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6338207125663757},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.6110978126525879},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5385308265686035},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.5363484621047974},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.46122485399246216},{"id":"https://openalex.org/C120567893","wikidata":"https://www.wikidata.org/wiki/Q1582085","display_name":"Knowledge extraction","level":2,"score":0.4543560743331909},{"id":"https://openalex.org/C94966114","wikidata":"https://www.wikidata.org/wiki/Q29256","display_name":"Black box","level":2,"score":0.4401075839996338},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.4191960394382477},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3652041554450989},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3095548748970032},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm55620.2022.9995532","is_oa":false,"landing_page_url":"http://dx.doi.org/10.1109/bibm55620.2022.9995532","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Quality Education","score":0.5400000214576721,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W47392883","https://openalex.org/W1977970897","https://openalex.org/W2014851363","https://openalex.org/W2076469305","https://openalex.org/W2896457183","https://openalex.org/W2953356739","https://openalex.org/W3138296822","https://openalex.org/W3169341408","https://openalex.org/W3185341429","https://openalex.org/W3206448387","https://openalex.org/W4250685163","https://openalex.org/W6601926695","https://openalex.org/W6802581584"],"related_works":["https://openalex.org/W2797441709","https://openalex.org/W2346578521","https://openalex.org/W4297660007","https://openalex.org/W2886918272","https://openalex.org/W4387589990","https://openalex.org/W2943982549","https://openalex.org/W3101055019","https://openalex.org/W2910028250","https://openalex.org/W4241566321","https://openalex.org/W3094353829"],"abstract_inverted_index":{"Recent":[0],"studies":[1],"show":[2,157],"that":[3,101,158],"deep":[4,42],"learning":[5,43],"models":[6,25],"perform":[7],"well":[8],"in":[9,81,165],"many":[10,60],"medical":[11,15,52,66,104],"tasks":[12],"such":[13,71],"as":[14,37,72],"imaging":[16],"and":[17,130,139,150,167],"automated":[18,99],"diagnosis.":[19,88],"With":[20],"qualified":[21],"training":[22],"datasets,":[23],"some":[24,34],"can":[26],"achieve":[27],"or":[28],"even":[29],"surpass":[30],"expert-level":[31],"performance":[32],"on":[33,153],"tasks.":[35,53],"However,":[36],"a":[38,94,119,154],"typical":[39],"black-box-style":[40],"approach,":[41],"lacks":[44],"theoretical":[45],"interpretability,":[46],"which":[47],"is":[48,84],"especially":[49],"important":[50],"for":[51,65,86,97,146],"On":[54],"the":[55,82,108,133,144,162],"other":[56],"hand,":[57],"there":[58],"are":[59],"sources":[61],"of":[62,121],"domain":[63],"knowledge":[64,80,109,138],"diagnosis":[67,100,134],"from":[68,111],"human":[69,79],"experts,":[70],"clinical":[73,113],"guidelines.":[74],"How":[75],"to":[76],"sufficiently":[77],"integrate":[78],"model":[83],"crucial":[85],"explainable":[87,98],"In":[89],"this":[90],"paper,":[91],"we":[92],"propose":[93],"novel":[95],"framework":[96,145],"leverages":[102],"explicit":[103],"knowledge.":[105],"We":[106,142],"automate":[107],"extraction":[110],"textual":[112],"guidelines":[114],"with":[115,126,136],"prompt-based":[116],"learning,":[117],"train":[118],"set":[120],"weighted":[122],"first-order":[123],"logical":[124],"rules":[125],"constructed":[127],"evidence":[128],"database,":[129],"finally":[131],"infer":[132],"result":[135],"integrated":[137],"multi-sourced":[140],"data.":[141],"instantiate":[143],"pulmonary":[147],"disease":[148],"diagnosis,":[149],"our":[151,159],"experiments":[152],"real":[155],"dataset":[156],"method":[160],"outperforms":[161],"state-of-the-art":[163],"baselines":[164],"accuracy":[166],"interpretability.":[168]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2025-12-23T23:11:35.936235","created_date":"2025-10-10T00:00:00"}
