{"id":"https://openalex.org/W4313525419","doi":"https://doi.org/10.1109/bibm55620.2022.9995517","title":"Adaptive Multi-view Graph Convolutional Network for Gene Ontology Annotations of Proteins","display_name":"Adaptive Multi-view Graph Convolutional Network for Gene Ontology Annotations of Proteins","publication_year":2022,"publication_date":"2022-12-06","ids":{"openalex":"https://openalex.org/W4313525419","doi":"https://doi.org/10.1109/bibm55620.2022.9995517"},"language":"en","primary_location":{"id":"doi:10.1109/bibm55620.2022.9995517","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm55620.2022.9995517","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082564890","display_name":"Yingwen Zhao","orcid":"https://orcid.org/0000-0002-3773-5858"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yingwen Zhao","raw_affiliation_strings":["Dalian University of Technology,College of Computer Science and Technology,Dalian,China","College of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,College of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051597671","display_name":"Zhihao Yang","orcid":"https://orcid.org/0000-0001-6186-2024"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhihao Yang","raw_affiliation_strings":["Dalian University of Technology,College of Computer Science and Technology,Dalian,China","College of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,College of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000430721","display_name":"Yongkai Hong","orcid":"https://orcid.org/0000-0003-4473-4017"},"institutions":[{"id":"https://openalex.org/I4210119119","display_name":"Beijing Administration Institute","ror":"https://ror.org/02mf18m55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210110145","https://openalex.org/I4210119119"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongkai Hong","raw_affiliation_strings":["Beijing Institute of Health Administration and Medical Information,Beijing,China","Beijing Institute of Health Administration and Medical Information, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Institute of Health Administration and Medical Information,Beijing,China","institution_ids":["https://openalex.org/I4210119119"]},{"raw_affiliation_string":"Beijing Institute of Health Administration and Medical Information, Beijing, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100736263","display_name":"Lei Wang","orcid":"https://orcid.org/0000-0002-8420-6860"},"institutions":[{"id":"https://openalex.org/I4210119119","display_name":"Beijing Administration Institute","ror":"https://ror.org/02mf18m55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210110145","https://openalex.org/I4210119119"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Wang","raw_affiliation_strings":["Beijing Institute of Health Administration and Medical Information,Beijing,China","Beijing Institute of Health Administration and Medical Information, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Institute of Health Administration and Medical Information,Beijing,China","institution_ids":["https://openalex.org/I4210119119"]},{"raw_affiliation_string":"Beijing Institute of Health Administration and Medical Information, Beijing, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100343737","display_name":"Yin Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119119","display_name":"Beijing Administration Institute","ror":"https://ror.org/02mf18m55","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210110145","https://openalex.org/I4210119119"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yin Zhang","raw_affiliation_strings":["Beijing Institute of Health Administration and Medical Information,Beijing,China","Beijing Institute of Health Administration and Medical Information, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Institute of Health Administration and Medical Information,Beijing,China","institution_ids":["https://openalex.org/I4210119119"]},{"raw_affiliation_string":"Beijing Institute of Health Administration and Medical Information, Beijing, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023931221","display_name":"Hongfei Lin","orcid":"https://orcid.org/0000-0003-0872-7688"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongfei Lin","raw_affiliation_strings":["Dalian University of Technology,College of Computer Science and Technology,Dalian,China","College of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,College of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100370452","display_name":"Jian Wang","orcid":"https://orcid.org/0000-0002-4656-7446"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian Wang","raw_affiliation_strings":["Dalian University of Technology,College of Computer Science and Technology,Dalian,China","College of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dalian University of Technology,College of Computer Science and Technology,Dalian,China","institution_ids":["https://openalex.org/I27357992"]},{"raw_affiliation_string":"College of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"90","last_page":"93"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7619445323944092},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5989996194839478},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.533240795135498},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4860139489173889},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.47507256269454956},{"id":"https://openalex.org/keywords/encoding","display_name":"Encoding (memory)","score":0.4735404849052429},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4548114836215973},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4256693422794342},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.4189065396785736},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1965676248073578}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7619445323944092},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5989996194839478},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.533240795135498},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4860139489173889},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.47507256269454956},{"id":"https://openalex.org/C125411270","wikidata":"https://www.wikidata.org/wiki/Q18653","display_name":"Encoding (memory)","level":2,"score":0.4735404849052429},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4548114836215973},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4256693422794342},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.4189065396785736},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1965676248073578},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/bibm55620.2022.9995517","is_oa":false,"landing_page_url":"https://doi.org/10.1109/bibm55620.2022.9995517","pdf_url":null,"source":{"id":"https://openalex.org/S4363607730","display_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"conference"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2022 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W2101267652","https://openalex.org/W2114315281","https://openalex.org/W2133564696","https://openalex.org/W2227395312","https://openalex.org/W2604808360","https://openalex.org/W2614461365","https://openalex.org/W2964015378","https://openalex.org/W3005335133","https://openalex.org/W3146944767","https://openalex.org/W4200629487","https://openalex.org/W4236358448","https://openalex.org/W6679434410","https://openalex.org/W6726873649","https://openalex.org/W6780145172","https://openalex.org/W6804933091"],"related_works":["https://openalex.org/W4293226380","https://openalex.org/W2003333417","https://openalex.org/W2378862226","https://openalex.org/W118236634","https://openalex.org/W2355326633","https://openalex.org/W4321487865","https://openalex.org/W4313906399","https://openalex.org/W2804669904","https://openalex.org/W2149777447","https://openalex.org/W4391266461"],"abstract_inverted_index":{"Gene":[0],"Ontology":[1],"(GO)":[2],"containing":[3],"a":[4,33,43,61,128],"set":[5],"of":[6,18,60,102,117,144,161],"standard":[7],"concepts":[8],"(or":[9],"terms)":[10],"is":[11,58,109,165],"launched":[12],"to":[13,26,46,111],"unify":[14],"the":[15,83,114,121,142],"functional":[16,49,90],"descriptions":[17],"proteins.":[19],"Developing":[20],"computational":[21],"models":[22],"based":[23],"on":[24,141],"GO":[25,54,80,103,136],"automatically":[27],"annotate":[28],"protein":[29,67,132],"functions":[30],"has":[31],"been":[32],"longstanding":[34],"active":[35],"research":[36],"area.":[37],"In":[38],"this":[39],"paper,":[40],"we":[41],"propose":[42],"novel":[44],"method":[45,57,154,164],"adaptively":[47,112],"fuse":[48],"and":[50,69,94,97,135,149],"topological":[51,92],"information":[52],"between":[53,131],"Terms.":[55],"Our":[56],"composed":[59],"pre-trained":[62],"language":[63],"model":[64],"for":[65,78],"encoding":[66],"sequences":[68],"an":[70,106],"adaptive":[71],"multi-view":[72],"graph":[73],"convolutional":[74],"network":[75],"(Multi-view":[76],"GCN)":[77],"representing":[79],"terms.":[81,104],"Particularly,":[82],"Multi-view":[84],"GCN":[85],"considers":[86],"multiple":[87,99],"views":[88],"from":[89],"information,":[91],"structures,":[93],"their":[95],"combinations,":[96],"extracts":[98],"corresponding":[100],"representations":[101],"Then,":[105],"attention":[107],"mechanism":[108],"applied":[110],"learn":[113],"importance":[115],"weights":[116],"these":[118],"representations.":[119,138],"Finally,":[120],"predicted":[122],"scores":[123],"are":[124],"calculated":[125],"by":[126],"using":[127],"dot":[129],"product":[130],"sequence":[133],"features":[134],"term":[137],"Experimental":[139],"results":[140],"datasets":[143],"two":[145],"species":[146],"(i.e.,":[147],"Human":[148],"Yeast)":[150],"show":[151],"that":[152],"our":[153,162],"outperforms":[155],"other":[156],"state-of-the-art":[157],"methods.":[158],"The":[159],"code":[160],"proposed":[163],"available":[166],"at:":[167],"https://github.com/Candyperfect/Master.":[168]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
